mRNA_S-dermatodea_contig11674.1068.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11674.1068.1
Unique NamemRNA_S-dermatodea_contig11674.1068.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11674.1068.1 vs. uniprot
Match: A0A6H5JDH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.350e-9
Identity = 49/133 (36.84%), Postives = 57/133 (42.86%), Query Frame = 1 
Query:   43 AAGETVEGVTPTLALPKPNPFLPSKFAIKEAPPWTTDDDAVHCESVNGTTXXXXXXXXXXXXXXXXXXXXXAGSGDVSGPPTATKPKPSPRRVAGGKAS-------GAGPRLTLWHLQDRAFHQPRAEINLKV 420
            +  ++ E   PTLALPKPN F+PS+  IKE P  + D       S                           G G       A +   SPR+VA   AS       G   R TLWHLQDR F QPRAEI LKV
Sbjct:  397 SGSDSSEPPLPTLALPKPNRFIPSELGIKEIPAGSEDGSGNIASSTEAEA---------------------GGKGAAHHRQQAERH--SPRKVARESASARDAGGGGGVVRCTLWHLQDRTFGQPRAEIYLKV 506
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11674.1068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDH7_9PHAE5.350e-936.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11674contigS-dermatodea_contig11674:4457..6337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.5790708-CDS-S-dermatodea_contig11674:4456..45191622924213.5790708-CDS-S-dermatodea_contig11674:4456..4519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11674 4457..4519 +
1694079097.622813-CDS-S-dermatodea_contig11674:4456..45191694079097.622813-CDS-S-dermatodea_contig11674:4456..4519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11674 4457..4519 +
1622924213.5904343-CDS-S-dermatodea_contig11674:5980..63371622924213.5904343-CDS-S-dermatodea_contig11674:5980..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11674 5981..6337 +
1694079097.630477-CDS-S-dermatodea_contig11674:5980..63371694079097.630477-CDS-S-dermatodea_contig11674:5980..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11674 5981..6337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11674.1068.1prot_S-dermatodea_contig11674.1068.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11674 4457..6337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11674.1068.1

>prot_S-dermatodea_contig11674.1068.1 ID=prot_S-dermatodea_contig11674.1068.1|Name=mRNA_S-dermatodea_contig11674.1068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
TKKGQEKEIAANRKAAGETVEGVTPTLALPKPNPFLPSKFAIKEAPPWTT
DDDAVHCESVNGTTTTTTNTAITTRTNDKEAVVAVAGSGDVSGPPTATKP
KPSPRRVAGGKASGAGPRLTLWHLQDRAFHQPRAEINLKV
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mRNA from alignment at S-dermatodea_contig11674:4457..6337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11674.1068.1 ID=mRNA_S-dermatodea_contig11674.1068.1|Name=mRNA_S-dermatodea_contig11674.1068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1881bp|location=Sequence derived from alignment at S-dermatodea_contig11674:4457..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAAAAAGGGCAGGAGAAGGAGATAGCAGCGAACCGAAAGGCGGCAGG
GGAGACCGTGGAGGTGAGGGGGGGGGGGGGGCGGGGGGTGTGTGTGTGTC
CTTACGTTAACCAGGGCTTTCGGGCCTTGAATACGTTTTGTTCCGAATTT
CGTCGTCACTACTACGGGCATTATACTTGTACTAGTGGGTAGTACTAGTG
GGTAGCCACGGCGACGTGAGGTGTGCGTTGGCAGGACGATTTGTGGTTTT
GGAAAAATCAGGCCACTACTGTACTCTGTGAAGGACTACTTGTACATACA
ACGGCCAGGGGGGTGGGGGGGAGGGTGGGGGCGTACTCATGTTTTGCATG
CCTTACCTGTTAGCCTGTTAGACCATTGACCACGCGTCCTGTCCTCGAGA
AGACGGAGGAGCGTTGTTCCCACAAGATCGACCGCCGACTGCCAATCGTT
CCTTCCTACTCCGCCAAAGGTGGCGCAAAAATGTTTTTCCCATCCTGTCT
ACATCTGGATCCCTTCTTGCCTTCTCAGGCCACTTGTTATCCCCCAGTAT
AGCTCCCGGGGGGGGGAGGGGGGGGGTTACTCGGGTGGTGCATGCTTGAG
CTGTTAGGCCGTTTATTGACCACTATAATAGTGGGTAGTCACGGCTACGC
CCGTGAGGTGTGCGTTGGCACGAACTACTATTAATACTTGTACTCTGTAA
GGTACCACTCTCAAGCCCCTATGGCTTTTGGCGCCAACAACAGTGTATGG
TATAGGAATTGTTTGGCATCAACGTTCCACTCTAAATTCTAAATAAATAA
AAACGTACAGTACCAAGCGATATTTATTTAATAAATATGAGGTCGTCGTC
GGGAGGCCGGAGGACGGAGCGTTGTTATGTTGTTTTCACAGTACTAGTTC
GCCAATGTACGATCAATCGCCCTTTCCTGCTTTGCTGAGAGGTGGCGCGA
TTTCGTCTTTCGCTATCCCTTCTCTACATCATATTGGGGGGCGGTGGTCG
TGGCGGTGGTCGTGGTCGTGGTGGTCGTAGTCGTGCGGCATGGGGGGTAT
TCCTATGATAACGTCGTAAATAGTAAGTTACCCTAGACCATACTCCCCTC
CCAAATAAAACAACAACAAAAACACGACGAAAAAAAAAGAAAGTTGAGAC
CCCTTCCCCCCTCCCCCCCGACACTTGCTCTCTTCCCACCTCCTCTTCAG
CACGTCTTGAGTGTTATTATTTTATTTTATTTTATTTCATCTTCCCTCTT
GTTTTATTCTTGCTTCAGGGCGTAACCCTGCCCAGAAGCCCAGCAACCCT
TTCCTGCCCTTAGTACTATTATTAGTTTTCCTTAATATTTTTATCGTTAC
CTCTTTCGCGCATCTCTGACCACACAAGTCGGATCGGTTCGGATTAAGCC
AATCGACTACAGTACAGCACAGTATACAGTATACGTGTGCAAATCGAAGT
CGAAATCAAATCAATCAGAACCAATCCCTCTTTATGTTTGCTTCTCTTCT
CTCCTCTTCTCTTCTCTCCTTCAGGGCGTTACTCCGACGCTGGCCCTGCC
CAAGCCCAACCCTTTTCTTCCTTCCAAGTTCGCCATCAAGGAAGCCCCGC
CGTGGACGACCGACGACGACGCCGTCCATTGCGAGAGCGTAAACGGTACC
ACCACTACCACCACCAATACCGCCATCACCACCAGAACCAACGATAAGGA
GGCGGTGGTGGCTGTGGCGGGGAGCGGGGATGTATCCGGCCCTCCCACCG
CCACGAAGCCCAAGCCCAGCCCTCGGCGCGTGGCCGGGGGGAAAGCTTCG
GGAGCGGGGCCTCGGCTGACTCTGTGGCACCTACAAGACCGAGCCTTCCA
CCAGCCACGGGCGGAGATTAACTTGAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11674:4457..6337+

>mRNA_S-dermatodea_contig11674.1068.1 ID=mRNA_S-dermatodea_contig11674.1068.1|Name=mRNA_S-dermatodea_contig11674.1068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig11674:4457..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAAAAAGGGCAGGAGAAGGAGATAGCAGCGAACCGAAAGGCGGCAGG
GGAGACCGTGGAGACCAAAAAAGGGCAGGAGAAGGAGATAGCAGCGAACC
GAAAGGCGGCAGGGGAGACCGTGGAGGGCGTTACTCCGACGCTGGCCCTG
CCCAAGCCCAACCCTTTTCTTCCTTCCAAGTTCGCCATCAAGGAAGCCCC
GCCGTGGACGACCGACGACGACGCCGTCCATTGCGAGAGCGTAAACGGTA
CCACCACTACCACCACCAATACCGCCATCACCACCAGAACCAACGATAAG
GAGGCGGTGGTGGCTGTGGCGGGGAGCGGGGATGTATCCGGCCCTCCCAC
CGCCACGAAGCCCAAGCCCAGCCCTCGGCGCGTGGCCGGGGGGAAAGCTT
CGGGAGCGGGGCCTCGGCTGACTCTGTGGCACCTACAAGACCGAGCCTTC
CACCAGCCACGGGCGGAGATTAACTTGAAGGTGGGCGTTACTCCGACGCT
GGCCCTGCCCAAGCCCAACCCTTTTCTTCCTTCCAAGTTCGCCATCAAGG
AAGCCCCGCCGTGGACGACCGACGACGACGCCGTCCATTGCGAGAGCGTA
AACGGTACCACCACTACCACCACCAATACCGCCATCACCACCAGAACCAA
CGATAAGGAGGCGGTGGTGGCTGTGGCGGGGAGCGGGGATGTATCCGGCC
CTCCCACCGCCACGAAGCCCAAGCCCAGCCCTCGGCGCGTGGCCGGGGGG
AAAGCTTCGGGAGCGGGGCCTCGGCTGACTCTGTGGCACCTACAAGACCG
AGCCTTCCACCAGCCACGGGCGGAGATTAACTTGAAGGTG
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