mRNA_S-dermatodea_contig11673.1067.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11673.1067.1
Unique NamemRNA_S-dermatodea_contig11673.1067.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: D8LGK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.540e-52
Identity = 77/89 (86.52%), Postives = 83/89 (93.26%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVPWPC 267
            WFNIG  CFS+N VIL YLTVWLPH+RGI+VSWNVYSPRAIPTATVVGLICAL LNM+LW+VWGFLTPLILF+VFIG LFSLHFVPWPC
Sbjct:  151 WFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A836CLB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.840e-41
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVPWPC 267
            WFN+  ACF++N VI+GYLT+WLP ++ +   WN+Y PRAIP AT VG+IC ++LN+ALWSVWGFLTPLIL  VF+G LF LHFVPWPC
Sbjct:   71 WFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A6G0XCK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.000e-29
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +FNIG  CF IN  I  YL VWLP+++ I + W+VY PR IPTATVVGL+CAL L + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   85 YFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A024UNE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.310e-29
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +FN+G  CF IN  I  YL +WLP+++ I + WNVY PR +PTAT+VG++CAL   M LW VWGF TP ILF +F+G L + HF+P
Sbjct:   90 YFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: W4FWN3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 9.790e-29
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +FNIG  CF IN  I  YL++WLP+++ I + W+VY PR +PTATVVG++CAL   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   92 YFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A485KKF8_9STRA (Aste57867_8441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.730e-28
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +FNIG  CF IN  I  YL VWLP+I+ I + W+VY PR +PTAT VGL+CALT  + LW VWG  TP ILF +F+G L + HF+P
Sbjct:   90 YFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A1W0A176_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.190e-27
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +FNIG  CF +N  I  YL VWLP+++ I + W+VY PR IPTAT++G++CAL   + LW VWGF TP ILF +F+G L + HF+P
Sbjct:   78 YFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: B5Y508_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y508_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 3.300e-23
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    7 NIGAACFSINVVILGYLTVWLPHIRGIKVS--WNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVPW 261
             + A  F IN V+L YLTV+LP I+G+  S  W VY PR +PT T VG++  L L  A W VWGFL PL+L   F+G+LF LHFVPW
Sbjct:   86 QVAALSFGINTVLLLYLTVYLPKIKGLTDSSAWEVYCPRVVPTMTFVGVVTGLLLIRATWPVWGFLAPLVLGVEFLGLLFGLHFVPW 172          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: A0A2D4BMR8_PYTIN (Transmembrane protein putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMR8_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 9.380e-21
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +F++G  C  IN  I  YL ++LP+I+ I + WNVY PR IPTATVVG+I A     A W +WG  TP +L   FIG L + HF+P
Sbjct:  122 FFHVGLMCVGINTCITCYLAIYLPYIKRIHLEWNVYCPRMIPTATVVGVIAAFCFICAFWPIWGLFTPGLLLLFFIGSLMTAHFLP 207          
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Match: J9J388_9SPIT (Transmembrane protein putative n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J388_9SPIT)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-14
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLICALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVP 258
            +F++      IN+  + Y+TV+LP+I+ I   +  Y P+ IP  TV+G++   +L +ALW +WG+LTP+++F +F+G    L F+P
Sbjct:  100 FFDLAMIGIGINIAFMLYMTVYLPYIKRINEDFETYCPQLIPVVTVIGIVSFFSLLIALWPIWGWLTPIMMFILFMGYTMLLMFLP 185          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11673.1067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK7_ECTSI4.540e-5286.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLB2_9STRA5.840e-4166.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0XCK9_9STRA1.000e-2959.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UNE8_9STRA2.310e-2954.65Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4FWN3_9STRA9.790e-2954.65Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A485KKF8_9STRA3.730e-2856.98Aste57867_8441 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1W0A176_9STRA2.190e-2753.49Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
B5Y508_PHATC3.300e-2354.02Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A2D4BMR8_PYTIN9.380e-2148.84Transmembrane protein putative n=1 Tax=Pythium ins... [more]
J9J388_9SPIT1.890e-1437.21Transmembrane protein putative n=2 Tax=Oxytricha t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11673contigS-dermatodea_contig11673:63..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog2880.D8LGK7
EggNOG OGs2BN0F@1,2S1N7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001670.1
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.5331578-CDS-S-dermatodea_contig11673:62..2231622924213.5331578-CDS-S-dermatodea_contig11673:62..223Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11673 63..223 +
1694079097.599371-CDS-S-dermatodea_contig11673:62..2231694079097.599371-CDS-S-dermatodea_contig11673:62..223Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11673 63..223 +
1622924213.5465674-CDS-S-dermatodea_contig11673:1242..13511622924213.5465674-CDS-S-dermatodea_contig11673:1242..1351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11673 1243..1351 +
1694079097.6146998-CDS-S-dermatodea_contig11673:1242..13511694079097.6146998-CDS-S-dermatodea_contig11673:1242..1351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11673 1243..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11673.1067.1prot_S-dermatodea_contig11673.1067.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11673 63..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11673.1067.1

>prot_S-dermatodea_contig11673.1067.1 ID=prot_S-dermatodea_contig11673.1067.1|Name=mRNA_S-dermatodea_contig11673.1067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
WFNIGAACFSINVVILGYLTVWLPHIRGIKVSWNVYSPRAIPTATVVGLI
CALTLNMALWSVWGFLTPLILFSVFIGILFSLHFVPWPC*
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mRNA from alignment at S-dermatodea_contig11673:63..1351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11673.1067.1 ID=mRNA_S-dermatodea_contig11673.1067.1|Name=mRNA_S-dermatodea_contig11673.1067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1289bp|location=Sequence derived from alignment at S-dermatodea_contig11673:63..1351+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTTCAACATCGGGGCTGCGTGTTTTAGCATCAACGTGGTCATCCTCGG CTACCTTACGGTGTGGCTGCCGCACATTCGAGGCATCAAGGTCTCTTGGA ACGTGTACAGCCCACGAGCCATCCCTACGGCGACGGTTGTCGGGTTGATC TGCGCCTTGACGTGAGTGAGCGAGCGGGCGAGGGGGCGAACGAACTAGGT TTCTCTCGATTGTTTTCACTGTGTGTAAAGCAGTAACTAAATTCCGTCGA GTGTGGACACGGGGGTCCGTACACGAGGGTCCATGGGACGAAGAAAGTCC CGAGGCGTGGTTTTTTCTTCGGTCGTGGTAGCCAGGAAACTAGTATATGC CTGGTGGTAGTTATTATAGTAGACTAGTATTACCAGTATTTGATATACTA TTTATACACCTGGTACAGTACCATGGGTAGTAATTGATAAACTCTCTGGG TTTTGTTTGGTCTCATAGTCCGTGGGAAGACCAAGCCTTGATGCTCCGTT CTTGATCCTGGTTCCGTCGGTCGTTTGGTGCTCTTTCCGTCGGTAGTGGA AACCCCCAGGATGGATGTGTAGAATGGGGACAGAGATGGGCCTTAAGAAA CGTGCTCTCCACACAAGTGTGTTTTCGAATAACATAATTTATCTCGAATT TATCATGTGGGATCGGAACGGATCGGCAAACCATTGCCATTGATGGTTTG TTCGCGTCTGAGGCACAAGTCGGTTTGTGATAACAATACGTGTTAAGTTA AGTGTGAGCAGCAATCAGTCAGTCAAAAAAAGGAGTCAACCAAATAACAA ATCCAACCAATCAATCAACCAAATCAATCAAATCAATCAAATCAATCAAA TCAATCAAATCAATCAAATCAATCAAATCAAACAATCAACCAAACAATCA ATCAACCAATCAACCAACCAACCAACCAACGAACGTACCAAAAACCAATC AATCAACCAAGTGAAGTTACTCCTCGCCCTTACCGCAAGCAATTGACACT CTCGCTCACCCTGCTACTGTAGCTACCGTTTCTCTCGCGGCATTACCTAT CATCGATCATATCCCTATTATCCATCTACCGCCGCTCCGCGCTCGAGCAA AATCTCCCTCCCCCTTTCGCCCTATATATGACACGTTTTTTTGTGTTTTT GTTTCTCCATTACTTTTCAAATTACCCCAGGCTCAACATGGCGCTGTGGA GCGTGTGGGGCTTCTTGACGCCGCTGATCCTTTTCTCTGTTTTCATCGGA ATCTTGTTTAGCCTGCATTTTGTCCCGTGGCCATGCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11673:63..1351+

>mRNA_S-dermatodea_contig11673.1067.1 ID=mRNA_S-dermatodea_contig11673.1067.1|Name=mRNA_S-dermatodea_contig11673.1067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig11673:63..1351+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTTCAACATCGGGGCTGCGTGTTTTAGCATCAACGTGGTCATCCTCGG
CTACCTTACGGTGTGGCTGCCGCACATTCGAGGCATCAAGGTCTCTTGGA
ACGTGTACAGCCCACGAGCCATCCCTACGGCGACGGTTGTCGGGTTGATC
TGCGCCTTGACTGGTTCAACATCGGGGCTGCGTGTTTTAGCATCAACGTG
GTCATCCTCGGCTACCTTACGGTGTGGCTGCCGCACATTCGAGGCATCAA
GGTCTCTTGGAACGTGTACAGCCCACGAGCCATCCCTACGGCGACGGTTG
TCGGGTTGATCTGCGCCTTGACGCTCAACATGGCGCTGTGGAGCGTGTGG
GGCTTCTTGACGCCGCTGATCCTTTTCTCTGTTTTCATCGGAATCTTGTT
TAGCCTGCATTTTGTCCCGTGGCCATGCTGAGCTCAACATGGCGCTGTGG
AGCGTGTGGGGCTTCTTGACGCCGCTGATCCTTTTCTCTGTTTTCATCGG
AATCTTGTTTAGCCTGCATTTTGTCCCGTGGCCATGCTGA
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