mRNA_S-dermatodea_contig11670.1066.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11670.1066.1
Unique NamemRNA_S-dermatodea_contig11670.1066.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: D8LB65_ECTSI (Glucokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB65_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.110e-13
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 3 
Query:   69 MPTVLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            MPTV+  DIGGTSSRF+LY+  ++ +    G +APG LVFQ+TYPN+NV TF +QVS FL+
Sbjct:    1 MPTVMVADIGGTSSRFILYEALAKVE-LVVGQKAPGALVFQKTYPNENVATFYSQVSAFLE 60
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A6H5KCG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.820e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:   69 MPTVLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            MPTV+  DIGGTSSRF+LY+     Q    G +APG LVFQ+TYPN+NV TF  QVS+FL+
Sbjct:    1 MPTVMVADIGGTSSRFILYEALPEVQ-LVVGQKAPGALVFQKTYPNENVATFSFQVSSFLE 60
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A7S0WLH0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WLH0_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.050e-7
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTF 245
            VLAGDIGGT+SRF L++VP+      +G   PG LVF++ YPN+   +F + V TF
Sbjct:   71 VLAGDIGGTNSRFRLFEVPN--DAVVEGQNVPGTLVFEKIYPNEEFDSFESIVRTF 124
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A7S2Y0X7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0X7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.530e-7
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFL 248
            +L GDIGGT+SRF L++V +  +   +G +APG LVF++TYPN+    F   V  FL
Sbjct:   32 ILVGDIGGTNSRFQLFEVDNSMKA-CRGQKAPGALVFEKTYPNEKFDAFVDIVKLFL 87
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A6A4Z9B0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9B0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.850e-6
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            +++GD GGT++R  L+ VP     H +G  APGELVF Q Y N+N  +F   V  FLK
Sbjct:   11 IVSGDCGGTNTRLTLWRVPHN-SVHLKGKIAPGELVFNQKYLNENHGSFVEVVHLFLK 67
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A6V2YTH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YTH0_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 5.850e-6
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 3 
Query:   72 PTVLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            P +L GD+GGT+ R  LY V  +      GSRAPG+L+  QTYPN+   +F   +  FLK
Sbjct:    6 PMILVGDVGGTNCRLELYAV-EQGMVQTTGSRAPGDLIHAQTYPNEQHGSFLDILMVFLK 64
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: W4H812_9STRA (Glucokinase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H812_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.850e-6
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            +++GD GGT++R  L+ VP     H +G  APGELVF Q Y N+N  +F   V  FLK
Sbjct:   11 IVSGDCGGTNTRLTLWRVPHN-SVHLKGKIAPGELVFNQKYLNENHGSFVEVVHLFLK 67
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A024UW53_9STRA (Glucokinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UW53_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.800e-5
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            +++GD GGT++R  L+ VP     H +G  APGELVF Q Y N+N  +F   +  FLK
Sbjct:   11 IVSGDCGGTNTRLTLWRVPHD-SVHLKGKIAPGELVFNQKYLNENHGSFVEVMHLFLK 67
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BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Match: A0A485KX05_9STRA (Aste57867_12978 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KX05_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.150e-5
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 3 
Query:   78 VLAGDIGGTSSRFMLYDVPSRYQDHFQGSRAPGELVFQQTYPNQNVPTFCAQVSTFLK 251
            +++GD GGT++R  L+ VP R   H +G  APG+++F Q Y N+N  +F      FLK
Sbjct:   10 IVSGDCGGTNTRLTLWRVP-RNSVHLKGKIAPGQMLFNQKYLNENHSSFVEVCHLFLK 66
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11670.1066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LB65_ECTSI1.110e-1359.02Glucokinase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KCG9_9PHAE1.820e-1360.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0WLH0_9CHLO1.050e-750.00Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S2Y0X7_9STRA3.530e-747.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A4Z9B0_9STRA5.850e-646.55Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6V2YTH0_HETAK5.850e-645.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W4H812_9STRA5.850e-646.55Glucokinase n=1 Tax=Aphanomyces astaci TaxID=11209... [more]
A0A024UW53_9STRA2.800e-544.83Glucokinase n=2 Tax=Aphanomyces invadans TaxID=157... [more]
A0A485KX05_9STRA7.150e-541.38Aste57867_12978 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11670contigS-dermatodea_contig11670:5611..6323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size249
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11670.1066.1prot_S-dermatodea_contig11670.1066.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11670 5611..6320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.481774-CDS-S-dermatodea_contig11670:5610..57761622924213.481774-CDS-S-dermatodea_contig11670:5610..5776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11670 5611..5776 +
1694079097.5615647-CDS-S-dermatodea_contig11670:5610..57761694079097.5615647-CDS-S-dermatodea_contig11670:5610..5776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11670 5611..5776 +
1622924213.4921672-CDS-S-dermatodea_contig11670:6237..63201622924213.4921672-CDS-S-dermatodea_contig11670:6237..6320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11670 6238..6320 +
1694079097.5738432-CDS-S-dermatodea_contig11670:6237..63201694079097.5738432-CDS-S-dermatodea_contig11670:6237..6320Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11670 6238..6320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.5029218-UTR-S-dermatodea_contig11670:6320..63231622924213.5029218-UTR-S-dermatodea_contig11670:6320..6323Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11670 6321..6323 +
1694079097.5846026-UTR-S-dermatodea_contig11670:6320..63231694079097.5846026-UTR-S-dermatodea_contig11670:6320..6323Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11670 6321..6323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11670.1066.1

>prot_S-dermatodea_contig11670.1066.1 ID=prot_S-dermatodea_contig11670.1066.1|Name=mRNA_S-dermatodea_contig11670.1066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
HGPSFPSSLWNPYTPALISNWSSCRPCWRETSGGRRPGSCCTTCPRAIRT
TFKDHGRPASWSSSRPTLTRTCRRSALRFQHS*
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mRNA from alignment at S-dermatodea_contig11670:5611..6323+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11670.1066.1 ID=mRNA_S-dermatodea_contig11670.1066.1|Name=mRNA_S-dermatodea_contig11670.1066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=713bp|location=Sequence derived from alignment at S-dermatodea_contig11670:5611..6323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGACCATCCTTTCCCTCGTCTCTGTGGAACCCTTATACCCCCGCTCT
CATAAGTAACTGGTCATCATGCCGACCGTGCTGGCGGGAGACATCGGGGG
GACGTCGTCCAGGTTCATGCTGTACGACGTGCCCTCGCGCTATCAGGACC
ACTTTCAAGGATCACGGTACGATGTGACTATTTATAGCGCAGCAGTATGA
TGAGATTTGACATGATGACTACAGAGTATGATAATACTTTCTTCGTGACA
CAATGTGGTGACAAGCTTAATCTTGCACCACGCCCACCGCGAGCTGGCGA
CGAGCGCCCGGGAGTTAGTGCGTGCGTGCTGTTCAGTGTCCGACTCGGCC
GGTTTGTGAGTAAAACCTCCGTCGAAAAATGACTGAGAGACGCTCCTCGC
ACGCTTTCGTCTCTTGCTGTAACTACAACATAGACAACAGTAAAACACAT
AGCCTGTATCGTACAGTAGAGCAATTTCATTTGTAATACAGGCTGCTGTT
GTACCTGCTTGTAGGTTCAAACTACAGCAGTGTATACGGCAGCCAGTATC
AGCGCTTACAACATTTGACGCGATTTCTTGCCCCTGATGCTCGTCTCTCC
ACCCACGCGCCGTCGACAAACCCCAAGGGCGCCCGGCGAGCTGGTCTTCC
AGCAGACCTACCCTAACCAGAACGTGCCGACGTTCTGCGCTCAGGTTTCA
ACATTCTTGAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11670:5611..6323+

>mRNA_S-dermatodea_contig11670.1066.1 ID=mRNA_S-dermatodea_contig11670.1066.1|Name=mRNA_S-dermatodea_contig11670.1066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig11670:5611..6323+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGACCATCCTTTCCCTCGTCTCTGTGGAACCCTTATACCCCCGCTCT
CATAAGTAACTGGTCATCATGCCGACCGTGCTGGCGGGAGACATCGGGGG
GACGTCGTCCAGGTTCATGCTGTACGACGTGCCCTCGCGCTATCAGGACC
ACTTTCAAGGATCACGCACGGACCATCCTTTCCCTCGTCTCTGTGGAACC
CTTATACCCCCGCTCTCATAAGTAACTGGTCATCATGCCGACCGTGCTGG
CGGGAGACATCGGGGGGACGTCGTCCAGGTTCATGCTGTACGACGTGCCC
TCGCGCTATCAGGACCACTTTCAAGGATCACGGGCGCCCGGCGAGCTGGT
CTTCCAGCAGACCTACCCTAACCAGAACGTGCCGACGTTCTGCGCTCAGG
TTTCAACATTCTTGAGGCGCCCGGCGAGCTGGTCTTCCAGCAGACCTACC
CTAACCAGAACGTGCCGACGTTCTGCGCTCAGGTTTCAACATTCTTGA
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