mRNA_S-dermatodea_contig1166.1062.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1166.1062.1
Unique NamemRNA_S-dermatodea_contig1166.1062.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 6.530e-146
Identity = 213/238 (89.50%), Postives = 229/238 (96.22%), Query Frame = 1 
Query:    4 DMALPTESTVTKTRDRLKGSGSNKSEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNE 717
            DMA+PT STVTKTRDRLKGSGS+KSEWVTSF +QLKVL++RQ RQSRGEVFN+VNL QIFV+A +ASAIWWQSENV+DIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKS SDIG+YTAAPILYATA+YWCVGLRP+AGAFF FLLLFMGQVIVGQSIGL IST+IADIFTAQSFSFVLIL+LMLFGGFYVNN+NVPEG+ WLKYLSFLFYGFGGLLHNE
Sbjct:  326 DMAVPTASTVTKTRDRLKGSGSDKSEWVTSFGYQLKVLLQRQSRQSRGEVFNSVNLTQIFVVAMMASAIWWQSENVSDIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSTSDIGLYTAAPILYATAVYWCVGLRPEAGAFFTFLLLFMGQVIVGQSIGLLISTSIADIFTAQSFSFVLILSLMLFGGFYVNNNNVPEGLGWLKYLSFLFYGFGGLLHNE 563
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA)

HSP 1 Score: 308 bits (788), Expect = 2.820e-97
Identity = 138/214 (64.49%), Postives = 178/214 (83.18%), Query Frame = 1 
Query:   76 SEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNE 717
            + WVT+FW+QL+VL+ERQG+QSRGEVF+ VN+ QI  +A IASA+W+QS N++DI G  FFISIQQ+FN L++ MRVFP ERGLM+RERSTGSYRVGPYFLAKS SD+ +Y   P +YAT +YWCVGLRP A AF ++L++F+ +++  QS+G+ IS AI D   AQSFSFVL+L +MLFGGFYVNND +P+GI+W+KYLSFL++G+G LL NE
Sbjct:  421 TSWVTTFWYQLRVLLERQGKQSRGEVFSGVNIFQILAVAVIASAVWFQSNNISDITGVFFFISIQQSFNALSSIMRVFPAERGLMMRERSTGSYRVGPYFLAKSFSDMALYVLFPAIYATLVYWCVGLRPSASAFVVYLVIFLSEIMAAQSVGMLISAAIKDFAAAQSFSFVLVLVIMLFGGFYVNNDRIPQGIRWIKYLSFLYWGYGALLVNE 634
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: R1DY78_EMIHU (ABC transporter domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DY78_EMIHU)

HSP 1 Score: 224 bits (570), Expect = 7.960e-66
Identity = 108/216 (50.00%), Postives = 147/216 (68.06%), Query Frame = 1 
Query:   76 SEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNEVG 723
            S + TS W+Q  VL+ER  +Q RG+V+N  N+ QI  +A IA+ +W  +  V+DI G +FF++IQQAFN  NT +R+FP ER LM+RER  G+YR+ PYFLA+S +D       P+LYA  IY+ VGLRP AG FF +L L +  V  GQSIGLFIS  I D+  +   SF+ +L +MLFGGFYV  D +P  I W++Y SF+F+G+ G++ NE G
Sbjct:  337 SHFATSSWWQFCVLLERSAKQQRGDVYNLTNIFQILAVAVIAAILWSGATTVSDIKGVLFFVNIQQAFNAQNTVLRLFPLERQLMLRERRCGTYRMLPYFLARSAADSFAILVLPVLYAIIIYFSVGLRPGAGPFFTYLALSLSTVFTGQSIGLFISLLIPDLALSSCVSFIFVLMVMLFGGFYVGVDRIPGWISWMRYASFMFWGYSGMVINEFG 552
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A7S3XRQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRQ7_HETAK)

HSP 1 Score: 184 bits (466), Expect = 2.410e-51
Identity = 89/213 (41.78%), Postives = 132/213 (61.97%), Query Frame = 1 
Query:   76 SEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHN 714
            + W TS   Q +VL+ERQ ++ RG   N V+  Q   ++AI  A+WWQ+ NV DI G +FF++I QAFN +   ++VFP +R L++RER  G YRVG YFLA+++SD       P+LYA   Y   G+   A  FF ++ LF   ++  Q+ GL +S+   ++  A   +F  +L L+L GGFYV ND +P GI+WL  +SF+++GF G+  N
Sbjct:  237 TRWATSGAHQFRVLLERQLKEGRGSALNKVSFIQCLAVSAIVCALWWQTNNVNDILGFLFFVTINQAFNVVQAMVKVFPAQRALLVRERGAGYYRVGAYFLARTLSDSLTSYIFPMLYALLCYTGTGVVSSAEDFFTYMALFFSVIMAAQAYGLLLSSMFREVQIATIVAFTSVLALLLIGGFYVENDRLPVGIRWLTNISFIYWGFTGMSVN 449
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.510e-50
Identity = 90/211 (42.65%), Postives = 135/211 (63.98%), Query Frame = 1 
Query:   79 EWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGA-FFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLL 708
            +W TSFW+Q  VL +R  +QS GE F+ VN+  I + AA   A+W+Q+ N+ D+ G +FF+ + Q F+   T  R+FP ER LM+RERSTGSY+VGPYFLAK+ SD+      P +YA  +Y   GL   + + FF+++ +F   V+ GQS G F S A+ D+  A    F  IL +++ GGFY+    +P G++WL YLSF+++G+  ++
Sbjct:  387 KWSTSFWYQFLVLYQRSAKQSSGENFDRVNVLGILLTAACMCAMWFQATNLKDLVGLLFFLVLNQPFSMAATVCRIFPKERSLMMRERSTGSYQVGPYFLAKTCSDLTAGYVVPTIYAIMVYCFCGLYTGSVSHFFLYMAIFWAMVMTGQSYGYFWSAAVTDLPMANMLVFTTILFMVIAGGFYIPMARLPTGLQWLPYLSFIYWGYSAIM 597
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A7S4F7N7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F7N7_CHRCT)

HSP 1 Score: 174 bits (441), Expect = 1.170e-48
Identity = 93/194 (47.94%), Postives = 124/194 (63.92%), Query Frame = 1 
Query:   19 TESTVTKTRDR-LKGSGSNKSEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLI 597
            T++T T+T     +G  S  +   TS WFQ +VL+ R  +Q RG+V+N  N  QI  +A IA+ +W    N++D  G +FF++IQQAFN  NT +R+FP ER LM+RER  GSYR+ PYFLAKS SD       P++YA  IY+ VGLR +AGAFF++L L +  V  GQSIGL IS A+ D   A   SFV +
Sbjct:  219 TKATGTRTAGAGARGPASANTGPTTSSWFQFRVLLARSAKQQRGDVYNKTNCFQILAVAVIAALLWSGDSNISDRKGVLFFVNIQQAFNAQNTVLRLFPRERSLMLRERRCGSYRMLPYFLAKSASDSVSIFVLPVIYAIIIYFSVGLRREAGAFFVYLALSLSTVFAGQSIGLIISLAVPDFALANCISFVAV 412
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A6P4A587_ZIZJJ (ABC transporter G family member 14 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A587_ZIZJJ)

HSP 1 Score: 162 bits (409), Expect = 2.520e-42
Identity = 83/226 (36.73%), Postives = 130/226 (57.52%), Query Frame = 1 
Query:   55 KGSGSNKSEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQS--ENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNEVGK 726
            KG G    +W TS+W Q KVL++R  R+ R E FN + + Q+  +A +   +WW +   ++ D    +FF S+   F  L  ++  FP ER ++I+ERS+G YR+  YFLA+++ D+ +  A P  +   IYW  GL+PD   F + LL+ +  V+V QS+GL I   + DI  A + + V  L  ++ GG+YV    +P  I WLKYLS+ +Y +  LL  + G+
Sbjct:  391 KGYGLKSEQWCTSWWHQFKVLLQRGLRERRHEAFNRLRIFQVISVAVLGGLLWWHTPTSHIEDRVALLFFFSVFWGFYPLYNAVFTFPLERTMLIKERSSGMYRLSSYFLARTVGDLPLELALPTAFVIIIYWMGGLKPDPFTFILSLLVVLYNVLVSQSLGLAIGAILMDIKQATTLASVTTLVFLIAGGYYV--QQIPSFIVWLKYLSYSYYCYKLLLGVQYGE 614
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A7J9GI62_9ROSI (ABC2_membrane domain-containing protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9GI62_9ROSI)

HSP 1 Score: 154 bits (389), Expect = 9.200e-42
Identity = 80/218 (36.70%), Postives = 126/218 (57.80%), Query Frame = 1 
Query:   79 EWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQS--ENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFG---GLLHNE 717
            +W TS W Q KVL++R  R+ R E FN + + Q+  +A +   +WW +   +++D    +FF S+   F  L  ++  FP ER ++I+ERS+G YR+  YFLA++  D+ +  A P  +   IYW  GL+PD   F + LL+ +  V+V QS+GL I   + DI  A + + V  L  ++ GG+YV    +P  I WLKYLS+ +Y +    G+ +NE
Sbjct:   60 QWCTSRWHQFKVLLQRGVRERRYEAFNRLRIFQVISVAVLGGLLWWHTPASHISDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTFGDLPLELALPTAFVFIIYWMGGLKPDPLTFILSLLIVLYSVLVSQSLGLAIGAILMDIKQATTLASVTTLVFLIAGGYYV--QQIPSFIVWLKYLSYSYYCYKLLLGVQYNE 275
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A7I8LMM0_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LMM0_SPIIN)

HSP 1 Score: 159 bits (402), Expect = 2.180e-41
Identity = 77/220 (35.00%), Postives = 132/220 (60.00%), Query Frame = 1 
Query:   73 KSEWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQS--ENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNEVGK 726
            K +W  S+W Q  V++ R  ++ R EVFN + + Q+  +A +A  +WWQ+   ++ D +  MFF S+   F  L  S+  FP ER ++++ERS+G YR+  YFLA+++ D+ +  A P  +   +YW  GL+PD  AFF+ LL+ +  V+V QS+GL I   + D+    + + V+ +  ++ GG+YV   ++P  I+W KYLS+ +Y +  LL  ++ +
Sbjct:  385 KEQWSISWWGQFNVILSRSLKERRYEVFNYLRIFQVVSVATLAGLLWWQTPPSHIQDRSALMFFFSVFWGFFPLYNSVFTFPQERSMLMKERSSGMYRLSSYFLARTVGDLPMELALPTTFVVILYWMGGLKPDPAAFFLSLLVVLYSVLVAQSLGLAIGAILMDVKQGTTLASVITIVFLIAGGYYV--QHIPVFIEWFKYLSYSYYCYKLLLGVQISE 602
[Close]
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Match: A0A2J6KCN8_LACSA (ABC transporter domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KCN8_LACSA)

HSP 1 Score: 158 bits (400), Expect = 3.210e-41
Identity = 80/212 (37.74%), Postives = 126/212 (59.43%), Query Frame = 1 
Query:   79 EWVTSFWFQLKVLMERQGRQSRGEVFNAVNLGQIFVIAAIASAIWWQ--SENVADIAGTMFFISIQQAFNGLNTSMRVFPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVGLRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTLMLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLL 708
            +W TS+W Q KVL+ R  R+ R E FN + + Q+  +A +A  +WW   S ++ D    +FF S+   F  L  ++  FP ER ++I+ERS+G YR+  YFLA+++SD+ +  A P  +   +YW  GL+PD   F + LL+ +  V+V QS+GL I   + D+  A + + V  L  ++ GG+Y+    +P  I WLKYLS+ +YG+  LL
Sbjct:  360 QWCTSWWHQFKVLVLRGLRERRFEAFNKLRIFQVISVAILAGLLWWHTPSSHIEDRIAMLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTISDLPLELALPTAFTFILYWMGGLKPDPSTFILSLLVVLYNVLVAQSLGLAIGAILMDVKQATTLASVTTLVFLIAGGYYI--QQIPTFIVWLKYLSYSYYGYKLLL 569
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1166.1062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB5_9PHAE6.530e-14689.50ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835YP26_9STRA2.820e-9764.49ATP-binding cassette superfamily n=1 Tax=Tribonema... [more]
R1DY78_EMIHU7.960e-6650.00ABC transporter domain-containing protein n=3 Tax=... [more]
A0A7S3XRQ7_HETAK2.410e-5141.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MQ19_9STRA1.510e-5042.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4F7N7_CHRCT1.170e-4847.94Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A6P4A587_ZIZJJ2.520e-4236.73ABC transporter G family member 14 n=2 Tax=Ziziphu... [more]
A0A7J9GI62_9ROSI9.200e-4236.70ABC2_membrane domain-containing protein n=3 Tax=Go... [more]
A0A7I8LMM0_SPIIN2.180e-4135.00Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A2J6KCN8_LACSA3.210e-4137.74ABC transporter domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1166contigS-dermatodea_contig1166:2493..7478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Seed ortholog evalue8.1e-118
Seed eggNOG ortholog2880.D8LI56
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_005290.1
Exons6
Model size735
Cds size729
Taxonomic scopeEukaryota
Seed ortholog score429.9
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.1188977-CDS-S-dermatodea_contig1166:2492..25711622924213.1188977-CDS-S-dermatodea_contig1166:2492..2571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 2493..2571 -
1694079097.2777705-CDS-S-dermatodea_contig1166:2492..25711694079097.2777705-CDS-S-dermatodea_contig1166:2492..2571Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 2493..2571 -
1622924213.1273453-CDS-S-dermatodea_contig1166:3238..32781622924213.1273453-CDS-S-dermatodea_contig1166:3238..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 3239..3278 -
1694079097.2905152-CDS-S-dermatodea_contig1166:3238..32781694079097.2905152-CDS-S-dermatodea_contig1166:3238..3278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 3239..3278 -
1622924213.1348197-CDS-S-dermatodea_contig1166:4035..41411622924213.1348197-CDS-S-dermatodea_contig1166:4035..4141Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 4036..4141 -
1694079097.2985957-CDS-S-dermatodea_contig1166:4035..41411694079097.2985957-CDS-S-dermatodea_contig1166:4035..4141Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 4036..4141 -
1622924213.144701-CDS-S-dermatodea_contig1166:5222..54411622924213.144701-CDS-S-dermatodea_contig1166:5222..5441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 5223..5441 -
1694079097.3070507-CDS-S-dermatodea_contig1166:5222..54411694079097.3070507-CDS-S-dermatodea_contig1166:5222..5441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 5223..5441 -
1622924213.152541-CDS-S-dermatodea_contig1166:6286..64271622924213.152541-CDS-S-dermatodea_contig1166:6286..6427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 6287..6427 -
1694079097.3163786-CDS-S-dermatodea_contig1166:6286..64271694079097.3163786-CDS-S-dermatodea_contig1166:6286..6427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 6287..6427 -
1622924213.1610148-CDS-S-dermatodea_contig1166:7328..74721622924213.1610148-CDS-S-dermatodea_contig1166:7328..7472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 7329..7472 -
1694079097.3272932-CDS-S-dermatodea_contig1166:7328..74721694079097.3272932-CDS-S-dermatodea_contig1166:7328..7472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1166 7329..7472 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.1731765-UTR-S-dermatodea_contig1166:7472..74781622924213.1731765-UTR-S-dermatodea_contig1166:7472..7478Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1166 7473..7478 -
1694079097.337701-UTR-S-dermatodea_contig1166:7472..74781694079097.337701-UTR-S-dermatodea_contig1166:7472..7478Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1166 7473..7478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1166.1062.1prot_S-dermatodea_contig1166.1062.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1166 2493..7472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1166.1062.1

>prot_S-dermatodea_contig1166.1062.1 ID=prot_S-dermatodea_contig1166.1062.1|Name=mRNA_S-dermatodea_contig1166.1062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=243bp
MALPTESTVTKTRDRLKGSGSNKSEWVTSFWFQLKVLMERQGRQSRGEVF
NAVNLGQIFVIAAIASAIWWQSENVADIAGTMFFISIQQAFNGLNTSMRV
FPPERGLMIRERSTGSYRVGPYFLAKSMSDIGIYTAAPILYATAIYWCVG
LRPDAGAFFIFLLLFMGQVIVGQSIGLFISTAIADIFTAQSFSFVLILTL
MLFGGFYVNNDNVPEGIKWLKYLSFLFYGFGGLLHNEVGKPP*
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mRNA from alignment at S-dermatodea_contig1166:2493..7478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1166.1062.1 ID=mRNA_S-dermatodea_contig1166.1062.1|Name=mRNA_S-dermatodea_contig1166.1062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4986bp|location=Sequence derived from alignment at S-dermatodea_contig1166:2493..7478- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGACATGGCGTTGCCGACAGAGTCCACAGTAACGAAGACGCGAGACCG
CCTCAAGGGCAGCGGATCCAACAAGTCTGAGTGGGTAACGTCGTTCTGGT
TCCAGCTGAAGGTGCTGATGGAGAGGCAAGGGCGACAGTCCAGGGGGGAG
GTGCGAGAAGGAGGGCAGACGTGAAAATGTTTTGTTCACGGCGGGGGTTG
GGGGGGGAGGGGGGGGGGTGCTTGATGTTAAATTGCATGTCGAATCCAAA
CGGACATAGACCACGCGCCCCAACGATGCCGGGACGTAGCGATATGCCGG
GTTCGCCGGCTAGGCTACGTTTCACAAGGATTGTACCAGCTGCTAGCCAT
CACCCTCGCGTTTGCGACGCCACTCCGATATGCCATGGGTTTTGATTGGG
CATATAGGGCAACCACATGTTGCACAATCAGTAGGCGTGACTATTCTCCA
AGTACCTCAAACGGGCTTTGATCTCCGTGCGAACGCAAAAGAGCCACGGG
CACACAGCATACACGCCGGCATGTGTGTGATGCACTCGGACACTAATCTG
TTTATGAGTATTTCTAGCAGAGTATCAGACATGGTCAATGGTGGCTCTAG
GGCTGTCCAAACCCGATGTTCAGCAGGTGTCCTATAGGATGTGATGCGTG
TCACCCCTTTGAAGAGAGGCAAGACTGTCCGACCGAGTCTCTGAGGGGAG
GGAAGGGGAGGGTTATTTTTTAGGGGGGGTATTCGCGAACCGGCACAAGG
TCTCCTTTAAGGTGTAAAGCCGGTTTGCGCAGTTTACTGCAAGTTTTGTC
CCGCTTCCAGACCTGTTCACTCCCTCGGCCTGCTGCCGCTGTACGGTCAC
CGCCGCATCGATCGAACAGCGCGAGTGCGACCTCGGCACGATGGCATATG
CCCCCACCCATGTGCCCGTCTGCTTCCCAAGCATACGTGTCCTATTTGCT
CTGTCCGCGTCATGTGTCCCAAGCATAAGTGTCCTATTTGCTCTGTCCGC
GTCACGTGTCACTCATTTGCGTGATCTGCCGGTTATCTAACATGTCTGCA
GGTGTTCAATGCCGTCAACCTGGGGCAGATATTTGTCATTGCTGCGATAG
CGTCGGCTATCTGGTGGCAAAGCGAAAACGTCGCGGACATAGCAGGAACC
ATGTTTTTCATCTCCATCCAGCAGGCTTTCAACGGACTAAACGTGAGATG
CGTGTGTATGTGTGTGCATGTATGTGTTTGTTTTTTGTTTTTCACTCATA
TTTGGAGTTAGTTGATTTCGATACGAATACAGTAGTATGTTTTTTTTTGC
GGGTGCGAACGATAAAAATGCTAAATATCATCGTACTAGGCATAATTCAA
CCTTTGTATATATTTTTTCCAGCCACGCTTTCACCCAGCGGTCCCTGCAC
GAGTACATGGACAGCACTGTACCGTCAATAGCTGTCGTTGTGCTTGGTGG
GCCCCATATTGTTCCCCATTTTTTGTCCGTGGCCCTTGCTTTGCTTGCTG
GAAAACGTGTACTTCTGACTTTTCGGGGATATGGGCAAGCGCCGTGTGGC
CATGTAAATCGTGATACATGTCCAAGCTCGTGCATGCCTTCCTACCCCAT
ACAAGCCCTCCGGTTCTGGACGTCGATGGACGTATGTGCCAATCGGCGTT
AAATTCTACCGTCACGGTTCTCCCGAAAAAAAAACTGTTTTTCCCGAGTG
AAGCCACTGGTTTTCACATGCTGTTTTTGTTGTTGTGAAGGGATTCCAGC
GCGCGGCCTTTTCCATGGTGAGGGTTATGATGCGCGGAGCTATTATAGCT
GTGTAGACGTGTATCACTTGTGTACTACGGTAGTTTCGTTCGTGCTTGAA
ATGGCTCGACCGCGACGCGGCACCTCCATCCACGGCGGCGGCTAAAGTGC
AAAAAGAACAAACGCGATGGCGGAAGCATTATCTGCTGCCGCTGCCGCTG
CCACTTCCGCTGCAGTTGCTGTTCCTGCTGCACTGCTTGAACTCGCTGTA
ACACGTCCTTCCATTGTCTTTGCTGGTTGTGGCGCAGACGAGCATGCGAG
TTTTTCCCCCTGAGCGAGGCCTGATGATCCGAGAGAGATCCACGGGCTCC
TACCGCGTCGGGCCCTACTTCTTGGCGAAGTCGATGAGCGACATCGGGAT
CTACACGGCCGCGCCGATCCTGTACGCGACCGCGATTTACTGGTGCGTGG
GGCTCAGGCCCGATGCTGGTGCTTTCTTCATTTTCCTACTTCTCTTCATG
GGACAGGTGAGCAAGTCAACAGGCCCTGCGAGAGTTTCAAAACAGCAGTT
GGAAAGCTATTGTATTCCGAGTTTTTTTTGCGTCGCCCCAGTAGAGCGCA
AGCCAAGGCCAACGAGAACGGATTGGGTTTGTCTACGTCCGCCCGTCTCC
TTTGTCCCTCGGGGGTGGGTCATGGGACGCGGGGAGCGTGCTCGGAATCT
GTGGGGTGGGCCAACTGTGATGCGGTATATATGCTGCGCTCTCAGGTGTT
AGTGTTACGCTCTCGAGCGTTCATCACCTCGGGGGGAATTATTGTAGCGA
AAATGTCGTTGTTGAAAACACGATTTACTGTTGTAGGTGATGGCTATGTT
TCCAACAGAAGCATTGTTCGATTCCGAGTGGCTCCTGTTTTTCTGGTGTG
GTAATATGTTATTTGTTGCTGGATATGTAGAAGGAGATATCTGGTTTAGC
ATTTTACCTCAACGCTTTGCGTAACTGCCGCCCAAGTCGAATCGGAATCA
GCCGATCGGCCATACGTCTTAAACTCAATATATCAATCAATCGATCAAGG
TTCCTTGACAGGACGTGGTGCTGGTGTGCAGGAAGAGTCACGGCCGATGA
AGGTTTCGTGCGTTATCTACGTTTTTGTTTTGCGCTGTCCTCCGGACAGC
AGCAGCGTCGATATAGCCTACCAGCGTGACAGTGATCTTGACGACCCTTC
AAGCAACGCGTGGGGTGTGCCATCGGATCGAGCGCGGGTGTCGCTCGTGG
AATCGTTCAAAACAGTTGAGTATCGCCGTTACTTGGACACCGCCGGAACA
TATGTTGTCGATTTTGTGTTTATCGAGAGGGCTACGCAACAGTTGCACAC
AAAACAACGTAAGTTGCGCGCCTTGTCGTCAAGAGTCGGGGTCAGGGTAA
CCCCCCCCCCCCCCCTCACGTCCGATGCCCCCCCCCCGATGTCCCTGTTT
GGAGCCGGCGGCAGGGCATAATAGCCGTAACACGCGATTGCCTCCATCGT
GGGACACGTAACGTTTCACGTATCGTAACAGTGCAAGTGTTTTACCCTTT
TCGTTTTCGGCGGATGCTTTGATGATGTGGGCGGCAGGTGATCGTGGGGC
AGAGCATCGGGCTGTTCATCAGCACGGCCATCGCGGACATTTTCACGGCG
CAATCGTTCTCCTTCGTGCTCATCCTGACTCTCATGCTCTTCGGTGAGTG
TGAAGGCTCCGGTGGTCAATTAATTACGTTGTCGCAGCAGTCCCATCTCT
CTCGAGAGAGCCGGTGCGGCCGATTTTACCACGGGTACTGCACAACTGTA
TATGTCACGGCGAGGGGTGTGCTTAAGTGCGATCACCGTGGATGCAAGCT
AAGTAAGCGTGGCTAGGTTTATCAACACGTTTCCACCGCGGCTCTGGCGA
GGAAAAGGGTAGCCACCGTTCGGGTACCGTCCGATGTGAACTACTTCGCA
GGCAGATGGCCTGGGCAATCCAAAGATAGGGGGGGGTGTACTCATTCATT
GATCGTGCATGCCGTAGTCGTTAGACCATAGACCTCGCACCCCTACAAAG
CCGGGACGGAGCACGCCGGGTTTTTCGCCGGACTAGACTAGGCTCGCATT
CACCAAGCGCGAATCGCCGTGATGCGTTCGGCGAGTCGCGTGAAGGGTGA
GCTGCATCCCGCTAAGAGTGTTCGGCCTAGACCGAACTAATTACAGCAGG
CCAGCCACAACAACATTGTTGCAATCCGGAATGCTTTGGTTGAACCTGGT
AAAGTCAGAACGGGATAATCTGAGATGGACTGGCTAATCAGGCGCTCGCG
AGCACATCAAGATACGAAAACGCCTTCTAAGTCTTACGCGACGGACAAAA
ACCGATTTTCTGCCCCCCCGTCCCTCACGTCCCCCCCTCACGCCGGCTCA
CACGCCCACCGTATGGCCCCCTTTCATTGACGCCTCTTTCGGTGCAAAAG
GTGGTTTCTACGTGAACAACGACAACGTGCCGGAAGGAATGTGAGTACCG
CAACCGCGGACACGTCGCATTCCGCGTTTGTCTGCGTGCTGGCGAGTAGT
ACCGTACGGGCTGTAGATACGTTTTGCGCGGCCGGGCCGGGGTTTTTGAG
GCTCGAGTCGGTTGCGTGCAGGCGGGCGACACGGCGATATAATGTCTGCT
GCGTACGATGCGCCGCGTGTGCCGGCCGGACGATTCTCGGCGAGCAGTGA
GTCCCGAGCATCGTTCACGCGGAGGTGGGACCGTCTGTTGCCCTACAGCG
CACAAAATACATTTTGGACAGAAAGGCTTGGGTACCGAACGGCCACGCTC
CTCGCGCACATCCTTACTCTATTAATAGTTTTGCGTGTATATATCAAAAC
ATGGCGTTGACAAGTTTTTTTTTTCCCCCTTTTTTGTTTCGCAGCAGTTG
ATATTGTGGCACGCGCGCGCCAAGTGCGCGTATTGATTCGCCTACCGTAG
TAAACCCACCTAAAACACCTAATTTTCCTTTCACGCCGAACGAAAGAGCT
CACGGTCTGGCCTTAATTGCACCCACCAACCCACTCACCCAACCCACCCA
CCCCTCCCGCGTCCCAACGCCCCCTCGCTGCAATGAATTATTTGCCGCCT
TACGCCCGGAAAACTCGCGGTGTCGTCGAATCCCTCTGTCAACCTGGCGG
CTCGCAGCAAGTGGCTTAAATACCTTTCGTTCCTGTTTTACGGCTTCGGA
GGTCTCTTGCACAATGAGGTAGGCAAACCCCCCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1166:2493..7478-

>mRNA_S-dermatodea_contig1166.1062.1 ID=mRNA_S-dermatodea_contig1166.1062.1|Name=mRNA_S-dermatodea_contig1166.1062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at S-dermatodea_contig1166:2493..7478- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTTGCCGACAGAGTCCACAGTAACGAAGACGCGAGACCGCCTCAA
GGGCAGCGGATCCAACAAGTCTGAGTGGGTAACGTCGTTCTGGTTCCAGC
TGAAGGTGCTGATGGAGAGGCAAGGGCGACAGTCCAGGGGGGAGATGGCG
TTGCCGACAGAGTCCACAGTAACGAAGACGCGAGACCGCCTCAAGGGCAG
CGGATCCAACAAGTCTGAGTGGGTAACGTCGTTCTGGTTCCAGCTGAAGG
TGCTGATGGAGAGGCAAGGGCGACAGTCCAGGGGGGAGGTGTTCAATGCC
GTCAACCTGGGGCAGATATTTGTCATTGCTGCGATAGCGTCGGCTATCTG
GTGGCAAAGCGAAAACGTCGCGGACATAGCAGGAACCATGTTTTTCATCT
CCATCCAGCAGGCTTTCAACGGACTAAACGTGTTCAATGCCGTCAACCTG
GGGCAGATATTTGTCATTGCTGCGATAGCGTCGGCTATCTGGTGGCAAAG
CGAAAACGTCGCGGACATAGCAGGAACCATGTTTTTCATCTCCATCCAGC
AGGCTTTCAACGGACTAAACACGAGCATGCGAGTTTTTCCCCCTGAGCGA
GGCCTGATGATCCGAGAGAGATCCACGGGCTCCTACCGCGTCGGGCCCTA
CTTCTTGGCGAAGTCGATGAGCGACATCGGGATCTACACGGCCGCGCCGA
TCCTGTACGCGACCGCGATTTACTGGTGCGTGGGGCTCAGGCCCGATGCT
GGTGCTTTCTTCATTTTCCTACTTCTCTTCATGGGACAGACGAGCATGCG
AGTTTTTCCCCCTGAGCGAGGCCTGATGATCCGAGAGAGATCCACGGGCT
CCTACCGCGTCGGGCCCTACTTCTTGGCGAAGTCGATGAGCGACATCGGG
ATCTACACGGCCGCGCCGATCCTGTACGCGACCGCGATTTACTGGTGCGT
GGGGCTCAGGCCCGATGCTGGTGCTTTCTTCATTTTCCTACTTCTCTTCA
TGGGACAGGTGATCGTGGGGCAGAGCATCGGGCTGTTCATCAGCACGGCC
ATCGCGGACATTTTCACGGCGCAATCGTTCTCCTTCGTGCTCATCCTGAC
TCTCATGCTCTTCGGTGATCGTGGGGCAGAGCATCGGGCTGTTCATCAGC
ACGGCCATCGCGGACATTTTCACGGCGCAATCGTTCTCCTTCGTGCTCAT
CCTGACTCTCATGCTCTTCGGTGGTTTCTACGTGAACAACGACAACGTGC
CGGAAGGAATGTGGTTTCTACGTGAACAACGACAACGTGCCGGAAGGAAT
CAAGTGGCTTAAATACCTTTCGTTCCTGTTTTACGGCTTCGGAGGTCTCT
TGCACAATGAGGTAGGCAAACCCCCCTGACAAGTGGCTTAAATACCTTTC
GTTCCTGTTTTACGGCTTCGGAGGTCTCTTGCACAATGAGGTAGGCAAAC
CCCCCTGA
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