mRNA_S-dermatodea_contig11655.1060.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11655.1060.1
Unique NamemRNA_S-dermatodea_contig11655.1060.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11655.1060.1 vs. uniprot
Match: D8LCN1_ECTSI (Breast cancer 2 like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.350e-32
Identity = 74/155 (47.74%), Postives = 95/155 (61.29%), Query Frame = 3 
Query:    3 VMAELEDATPEAFRRMKEAENPSSAFEQMSSDQQKEAREWRDRHQQ--VMEGLKQKAMDEHLRNMDGFQRKVRQLITLRIACTCHHAGANGGPNRDRDSSGGPPVMAA-----------------GVGV---------AGQRHALPPMAGMLKVW 383
            VM ELE+A P++FRRM+EAENPSS FE + ++ +KE  +WR+RHQQ  VMEGL+QKAMDE LR++DG  R+VRQLITLR+AC C HA     PN+ R   G P   AA                 G G           G+R  LPP++ ++KVW
Sbjct: 3155 VMRELEEALPDSFRRMREAENPSSFFEALPAEGRKEVTDWRERHQQARVMEGLRQKAMDERLRSVDGIDRRVRQLITLRVACVCPHADTTRTPNKSRKGDGAPSSTAAAAAGRKAVSSAPRGRRGGAGTRGPGGGEEFVGRRSGLPPISAVVKVW 3309
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BLAST of mRNA_S-dermatodea_contig11655.1060.1 vs. uniprot
Match: A0A6H5JH10_9PHAE (BRCA-2_helical domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH10_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.850e-26
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:    3 VMAELEDATPEAFRRMKEAENPSSAFEQMSSDQQKEAREWRDRHQQVMEGLKQKAMDEHLRNMDGFQRKVRQLITLRIACTCHH 254
            VM ELE+A P++FRRM+EAENPSS FE + +++QKE  +WR+RHQQ  +GL+QKAMDE LR MDG  R+VRQLITLR+AC C H
Sbjct: 3266 VMRELEEALPDSFRRMREAENPSSFFEALPAEEQKEVTDWRERHQQA-QGLRQKAMDERLRGMDGIDRRVRQLITLRVACVCPH 3348
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11655.1060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN1_ECTSI3.350e-3247.74Breast cancer 2 like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JH10_9PHAE2.850e-2665.48BRCA-2_helical domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11655contigS-dermatodea_contig11655:4191..6825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue6.9e-28
Seed eggNOG ortholog2880.D8LCN1
Preferred nameBRCA2
KEGG koko:K06236,ko:K08775
KEGG Pathwayko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.homologous chromosome orientation involved in meiotic metaphase I plate congression
EggNOG OGsKOG4751@1,KOG4751@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516
Hectar predicted targeting categoryother localisation
Exons4
Model size384
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11655.1060.1prot_S-dermatodea_contig11655.1060.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11655 4191..6820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.9902413-CDS-S-dermatodea_contig11655:4190..43591622924212.9902413-CDS-S-dermatodea_contig11655:4190..4359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 4191..4359 -
1694079097.181136-CDS-S-dermatodea_contig11655:4190..43591694079097.181136-CDS-S-dermatodea_contig11655:4190..4359Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 4191..4359 -
1622924213.0002058-CDS-S-dermatodea_contig11655:5128..52021622924213.0002058-CDS-S-dermatodea_contig11655:5128..5202Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 5129..5202 -
1694079097.193157-CDS-S-dermatodea_contig11655:5128..52021694079097.193157-CDS-S-dermatodea_contig11655:5128..5202Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 5129..5202 -
1622924213.007566-CDS-S-dermatodea_contig11655:5703..57871622924213.007566-CDS-S-dermatodea_contig11655:5703..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 5704..5787 -
1694079097.202736-CDS-S-dermatodea_contig11655:5703..57871694079097.202736-CDS-S-dermatodea_contig11655:5703..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 5704..5787 -
1622924213.0151212-CDS-S-dermatodea_contig11655:6769..68201622924213.0151212-CDS-S-dermatodea_contig11655:6769..6820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 6770..6820 -
1694079097.2177894-CDS-S-dermatodea_contig11655:6769..68201694079097.2177894-CDS-S-dermatodea_contig11655:6769..6820Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11655 6770..6820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.0252128-UTR-S-dermatodea_contig11655:6820..68251622924213.0252128-UTR-S-dermatodea_contig11655:6820..6825Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11655 6821..6825 -
1694079097.227807-UTR-S-dermatodea_contig11655:6820..68251694079097.227807-UTR-S-dermatodea_contig11655:6820..6825Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11655 6821..6825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11655.1060.1

>prot_S-dermatodea_contig11655.1060.1 ID=prot_S-dermatodea_contig11655.1060.1|Name=mRNA_S-dermatodea_contig11655.1060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
MAELEDATPEAFRRMKEAENPSSAFEQMSSDQQKEAREWRDRHQQVMEGL
KQKAMDEHLRNMDGFQRKVRQLITLRIACTCHHAGANGGPNRDRDSSGGP
PVMAAGVGVAGQRHALPPMAGMLKVW
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mRNA from alignment at S-dermatodea_contig11655:4191..6825-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11655.1060.1 ID=mRNA_S-dermatodea_contig11655.1060.1|Name=mRNA_S-dermatodea_contig11655.1060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2635bp|location=Sequence derived from alignment at S-dermatodea_contig11655:4191..6825- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGATGGCGGAGTTGGAGGACGCCACTCCGGAGGCGTTTCGCCGGATG
AAAGAGGTGGGCTTCACTATTTTCGTTCTTCTTTGCGCTATAATACAATT
TCTTCCTTTCTGTGTTATGTTTTACACATGCATGCATGTCTAGCAATTCC
TCATCATCCCCCTTGATGTTTTTGTTTTGTCTTCCGCTGGCTCTGCGTGT
AGCTTTTAGTTTGAGGTGATGTGATGCGCTGCGATATATGCTTTGCTTCC
GTAACGTTTTTTTCTTCTTCTACGGACCCGATTGGTGAAGAAGAGTATCA
ACATCACACGCACTGATAGCACAACGATGCGATCAGGTTGTTTTTTGGCA
GTGACGCGTGGCCGCTCTCGGCTATTCCACAACCGACTTTTACGGAGGAC
CATAGTTAACACAGGTCCAAATTTGCCACAAACTCTCAACTTAGAAAACC
AAAATAGGCTGGAATTATCGAGATTTCGTTGTCGATCTCGTTGTATAACT
CAATACCTCGTGCTTGTCTTCTTCACTGTAATTTCTGTTGTTGTTTGGGT
ATTCATGGTTGGAACGCTTGGGTAGTCATGGCCGTGACATTTGACCCTGA
TTACTCTGTACCTCCCTAATACAGTAGTACCCACTATCGTACCAAGTACA
AGTAGGTATGCGCCCTCCTCTGTCGAGGTTGCTGCTGCGAAGAGTGCTTC
AGTCAGTCACCCAAGCGCCGATACGCACCACGTGGTGTCACCATCTGTGG
ACACTGTTCAAACAACATGCCTTGCAGCATGCGTATAAGTGTTTCCAGAG
ATTTCCTGCCGTGTCTTTATCGTCTGCGTTCTCTTCCTTCGCGGCTGCGC
GGCTGCTGTCTTAGCTTCGCGACGCGTGCGCTGGCGACAGGGAGATACGT
ATCTGTGAAGACCCTGTGCGGCGGCCAGGTCGGAGCACTTTAGTATTTTG
CGGCCTGTGTGCGAGCAATTGTTTTGCCCGTAACGCTTACCCGATTGCCA
CGGTTCACGTGTTGCTTTACACCCTCCCCCTCCTCTAGGCTGAGAACCCC
TCGTCAGCCTTCGAGCAGATGTCGTCGGACCAGCAGAAGGAAGCCAGAGA
GTGGCGAGATCGTCACCAGCAGGTGACTTCGTGGTTTTTGGAGTGGAGGT
TTGGGAGCGTGCCGAATACACTTGAGAGTGTTCCCGGCTTGTGACGTAGT
CCCGGCTGGAGATATACCTTTTATCGCGCGCAAACGCAACGGTTTTGGTT
TCGCTGGTTTTATGACATTCTGCAAGTAAAGCCAAACGGAGAAATGCCGT
TTTCTTGAGCTCGAGCATTAGAGCTAGCTTTGCATATCGTGGTTGAAAAA
GTGCAAGTTACTGTAGTCTTCCTTTTTTTTTGCGCCACCTCTCGGGACGG
GTAGCTTCAGAAGCAAGCGTTTCGTGTTTTTACGTGCTCCGCTGAACGGT
TGGCGATCGAATCTGCTTGCGATGGCAGCTCTCTGCCACCGTTGTTGGCT
TGGAAAATACGTATGACAGCGATGAAGCCCGGAAGATGAACGGTGAAAAT
CGCAGCATGTTTTATCTTGTTGCTGTCTGACCTGACACGATGCCGGTGTC
CGCCCTTGATACACCTCGCGCAGGTAATGGAAGGTCTAAAGCAGAAAGCT
ATGGACGAGCACCTCCGAAACATGGATGGATTCCAGCGCAAAGTCAGGTA
ATATACAGTAATAGGGTGCACTTAACTATAAATGATTTTGTAGACTATAT
ATACTTGTAGGTAGTTGTTTTTTTGTTTTTTCGATTTCTCGCATTATTTC
TCATCTGACGACGAGCGGGATCGGCAACCTTTGGCGGGCCGGTCGGCTGT
TATAGTGTGATTCAACAAATGTTGTACATCGTTGTGTGCTAATCACACGT
TCATGTGGTAGGATCGCGTTTTTGCCCTGGTTGATCTCCGCCCCTGGCCA
GCTTGACGCGTTCATTGAAGCAAAACATGCGTCGGTTTTCGGTTCGGCAC
CACGCGCCCCATGGTTGAACTGGTTGACCAACAGGCCAGTAGGCGGAGGA
CCCGGATTCACATGCCGGCAGAGTTAATATTTACCTACTTTCTCTACCTC
AGCCGCGGAAAGCGCGAGACCGTGAGTAAGCAAAAAAATAATCCGAGATA
TCGGCGAGCTGTGGGAGTGCCGAACCCAATGCGCGATAAAAATCAAAGGT
GAGAACCGGGGAGGGATGGGATGATCCCTTGTGGCCACAGACGGACCTCG
GAAAAGCGACTCTATCATAAGTGTGCCAACAACAACAACAACTGTGAGCT
TTTTATTTATACAATCCGGCACCGGTTCGGCATTGCGTGATCTTCAGCCG
GTACTGGTTCGATACTTTCAGATTTTCGCGGGCATGTGAAGGCCCCTGGA
TGTTTTTAATCACCCGATTTCTCCCCCCATCTGACTTCCTACGTCCTACA
TTACGTGCCCCTGCAGGCAACTGATAACTCTACGCATAGCGTGCACGTGT
CATCACGCGGGGGCTAATGGCGGTCCTAATCGCGATCGTGACTCAAGCGG
TGGCCCGCCGGTGATGGCGGCAGGGGTTGGGGTCGCGGGTCAAAGGCACG
CGCTGCCGCCGATGGCGGGGATGCTGAAAGTCTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11655:4191..6825-

>mRNA_S-dermatodea_contig11655.1060.1 ID=mRNA_S-dermatodea_contig11655.1060.1|Name=mRNA_S-dermatodea_contig11655.1060.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11655:4191..6825- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGTTGGAGGACGCCACTCCGGAGGCGTTTCGCCGGATGAAAGA
GATGGCGGAGTTGGAGGACGCCACTCCGGAGGCGTTTCGCCGGATGAAAG
AGGCTGAGAACCCCTCGTCAGCCTTCGAGCAGATGTCGTCGGACCAGCAG
AAGGAAGCCAGAGAGTGGCGAGATCGTCACCAGCAGGCTGAGAACCCCTC
GTCAGCCTTCGAGCAGATGTCGTCGGACCAGCAGAAGGAAGCCAGAGAGT
GGCGAGATCGTCACCAGCAGGTAATGGAAGGTCTAAAGCAGAAAGCTATG
GACGAGCACCTCCGAAACATGGATGGATTCCAGCGCAAAGTCAGGTAATG
GAAGGTCTAAAGCAGAAAGCTATGGACGAGCACCTCCGAAACATGGATGG
ATTCCAGCGCAAAGTCAGGCAACTGATAACTCTACGCATAGCGTGCACGT
GTCATCACGCGGGGGCTAATGGCGGTCCTAATCGCGATCGTGACTCAAGC
GGTGGCCCGCCGGTGATGGCGGCAGGGGTTGGGGTCGCGGGTCAAAGGCA
CGCGCTGCCGCCGATGGCGGGGATGCTGAAAGTCTGGGCAACTGATAACT
CTACGCATAGCGTGCACGTGTCATCACGCGGGGGCTAATGGCGGTCCTAA
TCGCGATCGTGACTCAAGCGGTGGCCCGCCGGTGATGGCGGCAGGGGTTG
GGGTCGCGGGTCAAAGGCACGCGCTGCCGCCGATGGCGGGGATGCTGAAA
GTCTGG
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