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Homology
BLAST of mRNA_S-dermatodea_contig11653.1057.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 7.240e-21 Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 3
Query: 255 MGYQLDLDRSCMITASELDIPIDAATGVPLVCQWFCDSCASTETGAVAAT-GRRPRTSNIEEPKRRGCAASGQQPKGKSRK 494
MGYQLDLDRSC+ITAS++DIPID+ TG+P+VCQWFCDSC+ST TG VAAT GRR + +R AA PK K K
Sbjct: 1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRR-------QQRRLAVAAGLSTPKSKKGK 74
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | PHD-type zinc finger protein |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-01_009900.1 |
| Exons | 3 |
| Model size | 1283 |
| Cds size | 429 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11653.1057.1 >prot_S-dermatodea_contig11653.1057.1 ID=prot_S-dermatodea_contig11653.1057.1|Name=mRNA_S-dermatodea_contig11653.1057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
MQQQQEGRREKERQGPNRPSSLAACEICGEGEDHTEKQPQEERETLFALR
CNCCRRWYHPWCMGYQLDLDRSCMITASELDIPIDAATGVPLVCQWFCDS
CASTETGAVAATGRRPRTSNIEEPKRRGCAASGQQPKGKSRK* back to topmRNA from alignment at S-dermatodea_contig11653:771..4636- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11653.1057.1 ID=mRNA_S-dermatodea_contig11653.1057.1|Name=mRNA_S-dermatodea_contig11653.1057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3866bp|location=Sequence derived from alignment at S-dermatodea_contig11653:771..4636- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCTTAGTTTTGGGGTGTGGCCGTGCAGGTAGCCTACGATATATTTAG
CTGGAGACTGGTATTGCCATGCAGCAGCAGCAGGAAGGAAGGAGGGAGAA
GGAACGGCAAGGGCCGAACCGTCCGTCCTCCCTGGCCGCTTGCGAGATCT
GCGGTGAGGGAGAAGATCACACCGAGAAACAGCCGCAAGAAGAGAGGGAG
ACGCTGTTCGCGCTCAGGTGCAACTGCTGCCGCCGCTGGTACCACCCCTG
GTGCATGGGCTACCAGCTAGACCTCGACCGCTCCTGCATGATCACCGCGT
CCGAGTTGGACATCCCCATCGACGCTGCCACCGGAGTGCCTCTGGTTTGC
CAGTGGTTCTGCGACTCATGCGCGTCTACGGAGACGGGGGCGGTCGCCGC
GACCGGGAGACGGCCGCGAACCAGCAATATCGAGGAGCCGAAGAGGCGAG
GTTGCGCCGCCAGTGGACAGGTAGACAGCGGTGGTTCATTCTACAAGTAC
TCATCATGCATACGAGTTTTGGTCGTGCTTGAGTTGCGAACGGGTGGCAA
CTGTTGTGCAAGTGCGATTCTCACTGCAGGCGACTTGGCTCGAAGAGACA
CCCTGTTCAACACATCCATGTACCAGTACATATTTGTATCATATGTATAT
ATCAATAGTACAGCAGTATATGTACCAGTACAGTATAGCGTGGTGTGAAA
AATGCGGCACAACTACTGCTGTAATATGTAATACACAGCAGAGAGCAGAG
AGTACGAGTGTGATAAAATGCTCGACAGGAGAGTCGTCTTCTTGTACGTG
CTCTGTAGATAAAGCTCTATTAATAGGCTCTAGAGATGTAGAAGAGTGGG
CTGTCCACCACTCGTATGATACTACTACGGGGGACCATAGTTAACAGGTC
CAAATTTGCCACAAGTCTCAACCTAGAAAAATCAAAATAGGCTGGAATTA
TCGAGATTTCAAGGTCGATTTTCTTGTGTATGGCCATATCTCGTGTATTT
TTAAGTTTTTCGTGAGATTTATTATGTTGTTTTGGGTGTCATGGCAGATG
GTCGGAATACTTGGGCGTTCATGGTCATGATATTTGGTCCTGATTTTACT
GTGTACCTCCGTAATACTTTTGTATGATATGCACTACAGTGTTGAATCAT
ACATATGTGCTGTCCTATACTGTAGCAGTACATGATATGCTGCTGCTTTG
CTACCCCGGCGTTCGGCGCGTTCAAAGCTGTGCCTGCCCCTTGCGTTGCC
CGGTTATACGCACTACTCTCACGAGCGGCCCGACGCTTCCTTCATTCCGC
GCTGCTTTGCGTGGCTCTCCGCCTCTTCATTTTACGTTTCGCGTTTTTGT
GCAGCAACCGAAAGGGAAGTCAAGAAAGTGAATCTCCGTCCTTCGTCTCG
AGGCAACATCGACACACAGGGCGTTCGGCAACAGCCAACGGGGCCTTCCT
GTCCTAGGGTATCGATACGCTGATGTATCGATACTGCAGCGCAGTTGTAT
GGATAAGGTACGTGTTGTAGTTGTCGTTGGCACACATATGATAGACTTGC
TTTTCCGATGTCCGTCTGTGGGCACCACAAGGGATCGATCATCCCATCTC
TCTTATCTCCAGTTCTCACCTTTGATTTTTATCGCGAAAGCATTGGGTTC
GGCACTACAGCTCGCCGATTTCTTGTATTTTTTGCTTACTCACGCTCTCG
CGCTTTCCGCGGCGAAGGTACAGTAGAGAAGATAAGTAAATATCGACTCT
GCCGGGATTTGAACCCGGGTCCTCCGCCTACCGGACTGTTGGTCAACCAG
TTCAACCACGGGGCGCGCAGTGTACAACATTTAAAACTAGTACAGTAGTA
GTAGTAGTAGTACAGTAGTACAACAGTAGTAGTGCCAAAAAGGTCACAGA
GCTCCACGGGCGTTTACGTATGTAATGATATGTGTGTCTCTCCTTCTGCA
TAAAAAGGCGGAGATACAGAGTAATTAATAGTAGGTCCTATAATACATCA
CAAGTACGGAGGTACAGGGTACATGGCACTTGTACTGTAGTCATCAGGAG
CAAATATGCCAAACACTAAATAACACCCAACATATTCGTATGCCAGAAAT
CAATATATATGGTATGGTTTTAAAATATCTGCAATCTTCCTCTTCGGCCT
GAAATGTCGATCAAAAACTGCAGTAAACAAAAATCTTATACAAAACAATA
CAATACAAAACAATACAACACAAGACATTACAATACAAGACAATACCAGA
CAAAGATGTTCGGGCCAACTTTGAAAAACAAGGATTTGAATACGTGTACG
TTCTTGAGCAGAAATTTGGTCCTGATTGTACTATAATATTAAAATAATAT
CAGTATAATACTGTCTGTGTGTGTACTGTTTACCCCCGTAGTAGACTACC
AGTACACGTGGGGCGAGAGAAGGGCATGTGTTTTTTAGTTATTGTATGAG
TTATGTAGAGCTCTACTGTAACTGTACTCCGAAGTATGTATGTACGCAAC
TGCAGTGCGAGTTAGGGATGTACAAGCGTGAGCTAGGCGTTTTTTTCATA
GAACCACGAGCGTGAAGTGTGGTGTGTACTCTGTTGTGCGTACGCGTGAG
GAGAATGTGCTCCTGTTCCCGTCCAAGGCGGATATATCCTATGCGGGCCG
TAAGCTCTCATATTGTTATAATGTACAAGTAGAGGTAATCCGATGATGCA
ACAGCAGTTGCATCCCGTTTTTTTTACGTCTGACATAACCGCACCTTTCG
TCAACCAACCTAGATGCATATTCTATGACTACTGCTGTACATGCATACTC
GAGGACCTCCAGCGTATGCTTACGGTTTGGCTGAGAGTGCACGTCGTTTT
CTTGGTAATTGTTGTAAAAACGTACCAGGTACCAGTACAAGATATGCATG
AGCGAACTGATCTATACATCCAACAACACCAGTAGGCCCATGCCACTGAA
ATCGAAGGATTGCCACTTTTTGTTACTGGTATACTCTCTTCAGGCCGTGG
CACGCCTATGCTCCGTCCACTACAGGTCTGTTGCAAAGATAGTTATTATA
GTTAAACTGTATGTGCGCACTCATGGCAAGGGTTGGAAAGCGCCTTGGTC
ACAGCAGTATGTAGTATAAAATAGTAGTAAACCTCTCAGCACTGAATAAA
AACGCCAACGCAAGCATGCTCCCTTGAACTAACCTCTGGTTTTCCTTCTG
CCGCAGGCTGGCGATACCTTAGGCGCGCCAGGTGGAGACGCCCCCGCCAC
GCACGGACACTCGAGGCATTGAAAGCCGGCGCGGCCGTAGAACTCCCCTA
GCGCTCGGTCGTATATGGCAACCCGGATAGTTCAGGCGCCATGGCGCTGC
CGCTTTTGCCTGCTCCCGAGGATTCAATCCCGCGGCGATCGGGGACGACG
CGTGCGTTCGGCGCCTTCGGGGTTGGATCTGGTGCGCTCGCCCAAACACG
GCGTTTTGTCGCTGGCAAGCGTGTGCTTTGTGGAGTGAGAGGTTTGGTTC
CTGGGTGTGTTGTTTGTTGAGTGATGTTGGTGGACCCGTGTTGCGCTTCC
CTCGGGGGGGGGTCAAGATCGATCGGTAGATAGGTTCTATTTTATTACCG
TATGCGCGTGTTGTTCTGAAGTCATGTAATGTTATATGTATGCAAGACAG
GGTGTTTTGTTCGGGACGGGACTGGCCAGCGAGATTATCGTATGCATAGG
CCAGGCCTTAGCCCTCGTGGGACCGGTTCCGTTTCTGTGCCGGATATCTT
CACCACGGGTATATTAAGTATATATACATACTTCGAAGTATGTGTATATA
AGTATACATACATATGTGTATATATCGCGGTGACCGGGTGCATGCACAAG
TCCGCCAACAGCGTGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11653:771..4636- >mRNA_S-dermatodea_contig11653.1057.1 ID=mRNA_S-dermatodea_contig11653.1057.1|Name=mRNA_S-dermatodea_contig11653.1057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig11653:771..4636- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCAGCAGCAGGAAGGAAGGAGGGAGAAGGAACGGCAAGGGCCGAA
CCGTCCGTCCTCCCTGGCCGCTTGCGAGATCTGCGGTGAGGGAGAAGATC
ACACCGAGAAACAGCCGCAAGAAGAGAGGGAGACGCTGTTCGCGCTCAGG
TGCAACTGCTGCCGCCGCTGGTACCACCCCTGGTGCATGGGCTACCAGCT
AGACCTCGACCGCTCCTGCATGATCACCGCGTCCGAGTTGGACATCCCCA
TCGACGCTGCCACCGGAGTGCCTCTGGTTTGCCAGTGGTTCTGCGACTCA
TGCGCGTCTACGGAGACGGGGGCGGTCGCCGCGACCGGGAGACGGCCGCG
AACCAGCAATATCGAGGAGCCGAAGAGGCGAGGTTGCGCCGCCAGTGGAC
AGATGCAGCAGCAGCAGGAAGGAAGGAGGGAGAAGGAACGGCAAGGGCCG
AACCGTCCGTCCTCCCTGGCCGCTTGCGAGATCTGCGGTGAGGGAGAAGA
TCACACCGAGAAACAGCCGCAAGAAGAGAGGGAGACGCTGTTCGCGCTCA
GGTGCAACTGCTGCCGCCGCTGGTACCACCCCTGGTGCATGGGCTACCAG
CTAGACCTCGACCGCTCCTGCATGATCACCGCGTCCGAGTTGGACATCCC
CATCGACGCTGCCACCGGAGTGCCTCTGGTTTGCCAGTGGTTCTGCGACT
CATGCGCGTCTACGGAGACGGGGGCGGTCGCCGCGACCGGGAGACGGCCG
CGAACCAGCAATATCGAGGAGCCGAAGAGGCGAGGTTGCGCCGCCAGTGG
ACAGCAACCGAAAGGGAAGTCAAGAAAGTGACAACCGAAAGGGAAGTCAA
GAAAGTGA back to top
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