mRNA_S-dermatodea_contig11650.1055.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11650.1055.1
Unique NamemRNA_S-dermatodea_contig11650.1055.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11650.1055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11650contigS-dermatodea_contig11650:2339..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11650.1055.1prot_S-dermatodea_contig11650.1055.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11650 2413..2724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.6557808-UTR-S-dermatodea_contig11650:2338..24121622924212.6557808-UTR-S-dermatodea_contig11650:2338..2412Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11650 2339..2412 +
1694079096.974791-UTR-S-dermatodea_contig11650:2338..24121694079096.974791-UTR-S-dermatodea_contig11650:2338..2412Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11650 2339..2412 +
1622924212.687421-UTR-S-dermatodea_contig11650:2724..27561622924212.687421-UTR-S-dermatodea_contig11650:2724..2756Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11650 2725..2756 +
1694079096.993516-UTR-S-dermatodea_contig11650:2724..27561694079096.993516-UTR-S-dermatodea_contig11650:2724..2756Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11650 2725..2756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.6695907-CDS-S-dermatodea_contig11650:2412..27241622924212.6695907-CDS-S-dermatodea_contig11650:2412..2724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11650 2413..2724 +
1694079096.9845057-CDS-S-dermatodea_contig11650:2412..27241694079096.9845057-CDS-S-dermatodea_contig11650:2412..2724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11650 2413..2724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11650.1055.1

>prot_S-dermatodea_contig11650.1055.1 ID=prot_S-dermatodea_contig11650.1055.1|Name=mRNA_S-dermatodea_contig11650.1055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MGSIFVCTTRLLYSDTHRTAVSAKVCLRRQPRPMPPTTPSNIQPNRAGTL
VTYHNWRRLPRGRGARGNHRASPPRASRSATRRAATIDTIYNYTRGVIER
TER*
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mRNA from alignment at S-dermatodea_contig11650:2339..2756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11650.1055.1 ID=mRNA_S-dermatodea_contig11650.1055.1|Name=mRNA_S-dermatodea_contig11650.1055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=418bp|location=Sequence derived from alignment at S-dermatodea_contig11650:2339..2756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAAGCACATTCCCGACCCAACCTACGCCACCTCACCTCACCCCGATCT
CCTCAAAACACGCGCGCCCAAAGCATGGGCAGTATCTTCGTCTGCACCAC
ACGCCTGCTCTATTCGGATACACACCGTACAGCAGTATCAGCCAAAGTCT
GTCTGCGCAGACAACCTCGCCCGATGCCTCCAACGACGCCATCCAACATC
CAACCCAATCGTGCAGGAACTCTGGTGACGTATCATAATTGGCGGCGGCT
GCCGCGGGGGAGGGGGGCACGGGGAAATCATCGAGCGTCTCCCCCGCGAG
CTTCACGGTCCGCCACACGCCGCGCAGCGACAATCGACACAATATATAAT
TACACACGTGGCGTGATCGAACGAACTGAAAGGTAGATGGGGAGAACCAT
CACAGCAGCCCGACCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11650:2339..2756+

>mRNA_S-dermatodea_contig11650.1055.1 ID=mRNA_S-dermatodea_contig11650.1055.1|Name=mRNA_S-dermatodea_contig11650.1055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig11650:2339..2756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAGTATCTTCGTCTGCACCACACGCCTGCTCTATTCGGATACACA
CCGTACAGCAGTATCAGCCAAAGTCTGTCTGCGCAGACAACCTCGCCCGA
TGCCTCCAACGACGCCATCCAACATCCAACCCAATCGTGCAGGAACTCTG
GTGACGTATCATAATTGGCGGCGGCTGCCGCGGGGGAGGGGGGCACGGGG
AAATCATCGAGCGTCTCCCCCGCGAGCTTCACGGTCCGCCACACGCCGCG
CAGCGACAATCGACACAATATATAATTACACACGTGGCGTGATCGAACGA
ACTGAAAGGTAGATGGGCAGTATCTTCGTCTGCACCACACGCCTGCTCTA
TTCGGATACACACCGTACAGCAGTATCAGCCAAAGTCTGTCTGCGCAGAC
AACCTCGCCCGATGCCTCCAACGACGCCATCCAACATCCAACCCAATCGT
GCAGGAACTCTGGTGACGTATCATAATTGGCGGCGGCTGCCGCGGGGGAG
GGGGGCACGGGGAAATCATCGAGCGTCTCCCCCGCGAGCTTCACGGTCCG
CCACACGCCGCGCAGCGACAATCGACACAATATATAATTACACACGTGGC
GTGATCGAACGAACTGAAAGGTAG
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