mRNA_S-dermatodea_contig1165.1052.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1165.1052.1
Unique NamemRNA_S-dermatodea_contig1165.1052.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1165.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1165contigS-dermatodea_contig1165:3472..4259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size789
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.3330429-CDS-S-dermatodea_contig1165:3471..38671622924212.3330429-CDS-S-dermatodea_contig1165:3471..3867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 3472..3867 +
1694079096.731002-CDS-S-dermatodea_contig1165:3471..38671694079096.731002-CDS-S-dermatodea_contig1165:3471..3867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 3472..3867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.3471117-UTR-S-dermatodea_contig1165:3867..42591622924212.3471117-UTR-S-dermatodea_contig1165:3867..4259Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 3868..4259 +
1694079096.7390766-UTR-S-dermatodea_contig1165:3867..42591694079096.7390766-UTR-S-dermatodea_contig1165:3867..4259Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 3868..4259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1165.1052.1prot_S-dermatodea_contig1165.1052.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1165 3472..3867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1165.1052.1

>prot_S-dermatodea_contig1165.1052.1 ID=prot_S-dermatodea_contig1165.1052.1|Name=mRNA_S-dermatodea_contig1165.1052.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
DILLVVSWGPGCVSVAHGICRDVLCNVELLLQIDAKDTQSVQHDPPFPFG
KARPGCTLIGGRRSFSILYIYFLYIGMCMQWRAGEVPACSTTACFVQHLR
EISRAPNVAFGTVTEARFANVSWMAGWMKRR*
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mRNA from alignment at S-dermatodea_contig1165:3472..4259+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1165.1052.1 ID=mRNA_S-dermatodea_contig1165.1052.1|Name=mRNA_S-dermatodea_contig1165.1052.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=788bp|location=Sequence derived from alignment at S-dermatodea_contig1165:3472..4259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATATTTTGCTCGTTGTTAGTTGGGGGCCAGGCTGTGTGTCCGTGGCACA
TGGTATTTGTCGCGATGTTCTTTGCAATGTAGAACTCCTGTTACAAATAG
ATGCCAAAGACACCCAGAGTGTACAGCATGATCCTCCGTTCCCCTTTGGA
AAGGCGAGACCTGGATGTACCTTGATTGGTGGACGGCGAAGTTTTAGTAT
CTTATACATATATTTTTTATATATAGGTATGTGTATGCAGTGGCGGGCAG
GGGAGGTTCCCGCCTGTTCCACCACGGCGTGTTTCGTTCAGCACCTTAGA
GAAATCTCGAGGGCGCCAAACGTTGCCTTCGGCACTGTAACCGAAGCAAG
GTTCGCCAATGTTTCGTGGATGGCGGGGTGGATGAAAAGGAGGTAGACCT
CTCACGCAGGACGTGCTGGTGAGGTGCAATACACCCCGTCGTGGGGGGAA
ACCAATCAGCGGGACGAATGGATTGCCATAGAAGAAGCGTATTGTACACG
GTGGGGTGTCGAAGGGCGGTGTCGGTAGGATTCGCAGAGGGGAGCACTCT
TCTTATGTTCTCCTCTGTTTTAGGCGGGCCGCCGTTTCCATCCTATAGTG
TAGTTATTAATAGTTTGTATTTTGTTCCACGCGCTGGTATGAGAACTTGG
AGGCATAGGCAACGGCGAGGAGAGGTTAAGGGGGCCAACTTGGTTGCAGA
AGGAGTGCCCTGGGCAGCGTATGCCAGTGTGGTTCCGAGTCGTGATGGTG
GTGGTGGGGAAGACTTCGAATTGATAAACGATATTATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1165:3472..4259+

>mRNA_S-dermatodea_contig1165.1052.1 ID=mRNA_S-dermatodea_contig1165.1052.1|Name=mRNA_S-dermatodea_contig1165.1052.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig1165:3472..4259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATATTTTGCTCGTTGTTAGTTGGGGGCCAGGCTGTGTGTCCGTGGCACA
TGGTATTTGTCGCGATGTTCTTTGCAATGTAGAACTCCTGTTACAAATAG
ATGCCAAAGACACCCAGAGTGTACAGCATGATCCTCCGTTCCCCTTTGGA
AAGGCGAGACCTGGATGTACCTTGATTGGTGGACGGCGAAGTTTTAGTAT
CTTATACATATATTTTTTATATATAGGTATGTGTATGCAGTGGCGGGCAG
GGGAGGTTCCCGCCTGTTCCACCACGGCGTGTTTCGTTCAGCACCTTAGA
GAAATCTCGAGGGCGCCAAACGTTGCCTTCGGCACTGTAACCGAAGCAAG
GTTCGCCAATGTTTCGTGGATGGCGGGGTGGATGAAAAGGAGGTAGGATA
TTTTGCTCGTTGTTAGTTGGGGGCCAGGCTGTGTGTCCGTGGCACATGGT
ATTTGTCGCGATGTTCTTTGCAATGTAGAACTCCTGTTACAAATAGATGC
CAAAGACACCCAGAGTGTACAGCATGATCCTCCGTTCCCCTTTGGAAAGG
CGAGACCTGGATGTACCTTGATTGGTGGACGGCGAAGTTTTAGTATCTTA
TACATATATTTTTTATATATAGGTATGTGTATGCAGTGGCGGGCAGGGGA
GGTTCCCGCCTGTTCCACCACGGCGTGTTTCGTTCAGCACCTTAGAGAAA
TCTCGAGGGCGCCAAACGTTGCCTTCGGCACTGTAACCGAAGCAAGGTTC
GCCAATGTTTCGTGGATGGCGGGGTGGATGAAAAGGAGGTAG
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