mRNA_S-dermatodea_contig11600.1019.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11600.1019.1
Unique NamemRNA_S-dermatodea_contig11600.1019.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11600.1019.1 vs. uniprot
Match: A0A6H5JUU7_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.540e-10
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 QRDINHFREVMTLAILRGERSPTEAEAFIEDGGGYP-DGFAWWE 129
            Q DI H R+V+TLAILRGERSPTE EAF+EDGG  P D   WWE
Sbjct:  523 QSDIRHCRKVLTLAILRGERSPTEKEAFLEDGGSVPGDAGEWWE 566
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BLAST of mRNA_S-dermatodea_contig11600.1019.1 vs. uniprot
Match: D7FMM6_ECTSI (Protease, Ulp1 family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM6_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.490e-8
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 QRDINHFREVMTLAILRGERSPTEAEAFIEDGGGY-PDGFAWWE 129
            Q DI H R+V+TLAILRGERSPTE EAF+EDGG    +   WWE
Sbjct:  774 QSDIRHCRKVLTLAILRGERSPTEKEAFLEDGGSVLGEAGEWWE 817
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11600.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUU7_9PHAE2.540e-1070.45ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FMM6_ECTSI1.490e-865.91Protease, Ulp1 family n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11600contigS-dermatodea_contig11600:463..2341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Ec32 orthologEc-05_003090.1
Exons2
Model size219
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11600.1019.1prot_S-dermatodea_contig11600.1019.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11600 493..2341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.1920166-UTR-S-dermatodea_contig11600:462..4921622924210.1920166-UTR-S-dermatodea_contig11600:462..492Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11600 463..492 +
1694079095.1864433-UTR-S-dermatodea_contig11600:462..4921694079095.1864433-UTR-S-dermatodea_contig11600:462..492Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11600 463..492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.202754-CDS-S-dermatodea_contig11600:492..6401622924210.202754-CDS-S-dermatodea_contig11600:492..640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11600 493..640 +
1694079095.1992157-CDS-S-dermatodea_contig11600:492..6401694079095.1992157-CDS-S-dermatodea_contig11600:492..640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11600 493..640 +
1622924210.2168415-CDS-S-dermatodea_contig11600:2300..23411622924210.2168415-CDS-S-dermatodea_contig11600:2300..2341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11600 2301..2341 +
1694079095.207718-CDS-S-dermatodea_contig11600:2300..23411694079095.207718-CDS-S-dermatodea_contig11600:2300..2341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11600 2301..2341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11600.1019.1

>prot_S-dermatodea_contig11600.1019.1 ID=prot_S-dermatodea_contig11600.1019.1|Name=mRNA_S-dermatodea_contig11600.1019.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
MTLAILRGERSPTEAEAFIEDGGGYPDGFAWWEGDLDDDGMDDDGISSDG
EDDGDQEDKDYDE
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mRNA from alignment at S-dermatodea_contig11600:463..2341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11600.1019.1 ID=mRNA_S-dermatodea_contig11600.1019.1|Name=mRNA_S-dermatodea_contig11600.1019.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1879bp|location=Sequence derived from alignment at S-dermatodea_contig11600:463..2341+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAGAGACATCAACCACTTCCGCGAAGTGATGACGCTCGCCATCCTGCG
GGGCGAGAGGTCTCCGACAGAGGCGGAGGCGTTCATCGAAGATGGTGGCG
GTTACCCCGACGGTTTCGCGTGGTGGGAAGGCGACTTGGACGACGATGGG
ATGGACGACGACGGCATCAGCAGCGATGGTGAGAATAAATCAAGTCGGGT
AACCGCCCATCATATTTTGCAATCACCAGTGGGTAGCCCCGGCTGCGCGC
GTGAGGTGTGCGTTGGCACAAATACGAGGGATAATGTTCATTACCGGGTA
ACGGTAATGGTGTGTACATTAGTGTTTGCACCGGTAATATATAAACTGGC
GGTAATTTGACCCGTGTGGGAAACGTCCCCGTATGTATGTGGACTTCGTG
GCAGAAAATATAACATTGACACAATACACCCAGAAACACAAGAACAAATT
ACGCAAAAAGGAGCTCAACAGGCGCAGGAGCGAGGAGGAGGCGATGCGGG
GATTTATCGCTGACAACCCCCCGCACACACGTGCCGGCCAGGTTCGCCAC
GCCAGGGTAACATTGGGTGGTAAATGAGAAACCTATTACCGGTACCGGAG
CATTACCGGGTAAAAAATGAGCGGCCAAGAGGGTAATGTACATCCCTGCA
AATACTATACTCTGTGACGTACCACTCTCAAATCTCTATGACATTTGGCA
TCAAAAGTGTATCGGAACTTTTTGGCGTCACGGTCTTATAGGAATTGTAT
CGGTGTAAAGGCTCAAAATGCTACATAAAAAAATATGCAAAGCGGGGCCA
ATTGCTTTGATTTGACTCATCACGCATACAGCCGATCGGACTCCGATCCC
GCTCGTGGTTGCAAAAAAGGTACATAATGGTCGCAAACAAGGTACACAAG
GTACACACGGAAGAGGTCTCCCACCGAAAATGGGCGTCCACGCACACGAC
GATATCTTTTTATAAAGAAACAGAACACAGAGTGTACGATCCACAACTCA
TCGGGACTGGACCCGGGTGGACTTGCAGACCAGCCCTGCGAACGTAGATG
CCAACCGTATCGCCTATTTCTTTCCTCGACAGCGTCGCGCGCAACAACAT
CGTCCAACCCTTAAAAAAATGGATTATCAGGATTTAAATCTGTATTTTAT
GAGCGAGAGCATCGACCAGCTGCCTCTCCAGAGAATTTCTCGGGGAGCAG
TTCCAAGAACCGTCTTAGAATCGTTCAGATATATTTTTACGATAGCGTAA
GCCCGAGAGGGTGTAGCCACTTCGGTAAGTCTGCGTCGGGGCCGCATTAG
AGCTCAGGCTAGCGCACAACGCCAGAAGGTTAATCCGAGGGACAGATGGT
GGAGCAACCGCTGTTCAAGTAGCAGGCCTACTGCTATTCGCCCCCCCCCT
CCCCCCATTCAGACGAAGGGGGATAGCTACACTGGGGGATAAGAAGTAGA
CTGAGAAGACAAGACAGGGTAGGAAAAACGTATTTGCGCCATCTTTAGCA
GAGTAGGAAGGAACGATTGGCCATCGGCGATAGATCCTGTGTGAACAATG
CTCCGCCCTCCCGAGGACGCATGGACAATGACCTAACACCTAGGGCATGA
AAGCTTGAGCCCCCCCACCCCCCACCCCCCCCCCCCCACCACCCCCCCCG
CCCCCCCGCCCCCCCCCCGACCCCACAGCACCNNNNNNNNNNGCCCAACA
CAACCCCCCCCCCCACGCGGGACCGGGGACCACAACCCCCCACACGAACC
GAAAATTGGCCCCCCCCCCCCCCCCCCCCCCCGCCTCCCCAACAACTCCA
CGCAATTCAAACATACACGCGCGCCCGCCTTGTAGCAGGCGAAGACGACG
GCGACCAAGAGGATAAAGACTATGACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11600:463..2341+

>mRNA_S-dermatodea_contig11600.1019.1 ID=mRNA_S-dermatodea_contig11600.1019.1|Name=mRNA_S-dermatodea_contig11600.1019.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig11600:463..2341+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGCTCGCCATCCTGCGGGGCGAGAGGTCTCCGACAGAGGCGGAGGC
GTTCATCGAAGATGGTGGCGGTTACCCCGACGGTTTCGCGTGGTGGGAAG
GCGACTTGGACGACGATGGGATGGACGACGACGGCATCAGCAGCGATGAT
GACGCTCGCCATCCTGCGGGGCGAGAGGTCTCCGACAGAGGCGGAGGCGT
TCATCGAAGATGGTGGCGGTTACCCCGACGGTTTCGCGTGGTGGGAAGGC
GACTTGGACGACGATGGGATGGACGACGACGGCATCAGCAGCGATGGCGA
AGACGACGGCGACCAAGAGGATAAAGACTATGACGAGGCGAAGACGACGG
CGACCAAGAGGATAAAGACTATGACGAG
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