mRNA_S-dermatodea_contig11594.1014.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 122 bits (305), Expect = 1.020e-32 Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query: 1 NPHRRVFNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
+P RR +D+ DSME+D++ P GM SRF T+ FP S ++ +P GG GM+LD HET+KG+E+SADLPGM+ EDI VD+D E+GVLTVTGER+Q+REEKS+GD +RK
Sbjct: 10 DPFRRAMHDVFDSMERDLMAPSGMSSRFHTMDFPGS-SVALVSAVPSMGVEGG--LGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRK 122
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.800e-29 Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 16 VFNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGA-GAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
ND+ S+E+++L PWG+ SRFPT +R MFP P G G GM LD HET GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ ++EEK DG +G+RK
Sbjct: 19 TINDVFGSIEREMLAPWGLASRFPT-------TRDMFPTFPTSLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRK 123
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.570e-21 Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 52 ILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
+L PWG+ RFPT +R M P + GS M+LD HET GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ KREEK D +G+RK
Sbjct: 1 MLAPWGLAFRFPT-------ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRK 93
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5JPQ3_9PHAE (HSP20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ3_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.220e-20 Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 52 ILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGER 345
+L PWG SRFPT +R M P + GS M+LD HET GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ KRE K DG G+R
Sbjct: 1 MLAPWGFASRFPT-------ARDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKRE-KLDGKNGDR 91
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 4.410e-15 Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 115 RSMFPLLPGGAGAGGS-DFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDGDEGERK 348
R M P + GS M+LD HET GFE+ ADLPGM+ ED+++DVD E+GVLTV+GER+ +REEK D +G+RK
Sbjct: 70 RDMVPSVSSSLFRDGSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRK 148
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: UPI0016891749 (Hsp20/alpha crystallin family protein n=1 Tax=Microcystis elabens TaxID=44824 RepID=UPI0016891749) HSP 1 Score: 58.9 bits (141), Expect = 1.570e-8 Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 103 DRGSRSMFPLLPGG-AGAGG--SDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKS 324
DR +RS+ PG AGAGG +D+ +D+ ET+ G+E+ AD+PG+R +D+ V VDD GVLTV GER+Q+++E++
Sbjct: 17 DRYTRSLPWPWPGSRAGAGGLLADWHPRVDIVETEGGYEIQADIPGVRKQDLKVTVDD--GVLTVEGERQQEKKEEN 91
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A3N2R0I9_9GAMM (Hsp20/alpha crystallin family protein n=3 Tax=Marinobacter TaxID=2742 RepID=A0A3N2R0I9_9GAMM) HSP 1 Score: 55.1 bits (131), Expect = 4.820e-7 Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 19 FNDMLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDG 330
F D+LD + G+PS T G DR +R +F SD+ +D+HET + FE+ A+LPG++ ED+ V V D GVLT+ GER QK+EE +G
Sbjct: 13 FEDLLDRYNRHF----GLPS---TQG--DRENRDLFRR---------SDWAPAVDIHETPEAFEIHAELPGIKKEDVKVTVHD--GVLTLQGER-QKKEESGEG 95
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: A0A4R7JXD3_9GAMM (HSP20 family molecular chaperone IbpA n=1 Tax=Halospina denitrificans TaxID=332522 RepID=A0A4R7JXD3_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 2.960e-6 Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 181 DLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSDG 330
DL ETD+G+E+ DLPGM+ +DI VD+ D G+LTV+GER +RE++ G
Sbjct: 81 DLSETDEGYELQLDLPGMKKDDIQVDLTD--GLLTVSGERSDEREDERKG 128
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein n=40 Tax=Poaceae TaxID=4479 RepID=HS17A_ORYSJ) HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 49 DILVPWGMPSRFPTIGFP----DRGSRSMFPLLPGGAGAGGSDF-GMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSD 327
++ P+ + P GFP S S+FP P GA + + F G +D ET + AD+PG++ E++ V+VDD +L ++GER +++EEK+D
Sbjct: 8 NVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDD-GNILQISGERNKEQEEKTD 104
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein n=18 Tax=Poaceae TaxID=4479 RepID=HS181_ORYSJ) HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 49 DILVPWGMPSRFPTIGFP----DRGSRSMFPLLPGGAGAGGSDF-GMHLDLHETDKGFEMSADLPGMRMEDIAVDVDDETGVLTVTGEREQKREEKSD 327
++ P+ + P GFP R S S+FP P G + + F G +D ET + AD+PG++ E++ V+V+D VL ++GER +++EEK+D
Sbjct: 8 NVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVED-GNVLQISGERSKEQEEKTD 104 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11594.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11594.1014.1 >prot_S-dermatodea_contig11594.1014.1 ID=prot_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp MLDSMEQDILVPWGMPSRFPTIGFPDRGSRSMFPLLPGGAGAGGSDFGMHback to top mRNA from alignment at S-dermatodea_contig11594:3823..4173- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11594.1014.1 ID=mRNA_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig11594:3823..4173- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11594:3823..4173- >mRNA_S-dermatodea_contig11594.1014.1 ID=mRNA_S-dermatodea_contig11594.1014.1|Name=mRNA_S-dermatodea_contig11594.1014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig11594:3823..4173- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |