mRNA_S-dermatodea_contig1158.1004.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1158.1004.1
Unique NamemRNA_S-dermatodea_contig1158.1004.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1158.1004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1158contigS-dermatodea_contig1158:1674..4208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size309
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1158.1004.1prot_S-dermatodea_contig1158.1004.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1158 1688..4208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.7215858-UTR-S-dermatodea_contig1158:1673..16871622924208.7215858-UTR-S-dermatodea_contig1158:1673..1687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1158 1674..1687 +
1694079093.9397995-UTR-S-dermatodea_contig1158:1673..16871694079093.9397995-UTR-S-dermatodea_contig1158:1673..1687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1158 1674..1687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.7340527-CDS-S-dermatodea_contig1158:1687..17711622924208.7340527-CDS-S-dermatodea_contig1158:1687..1771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 1688..1771 +
1694079093.9472797-CDS-S-dermatodea_contig1158:1687..17711694079093.9472797-CDS-S-dermatodea_contig1158:1687..1771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 1688..1771 +
1622924208.7449372-CDS-S-dermatodea_contig1158:2858..29541622924208.7449372-CDS-S-dermatodea_contig1158:2858..2954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 2859..2954 +
1694079093.955015-CDS-S-dermatodea_contig1158:2858..29541694079093.955015-CDS-S-dermatodea_contig1158:2858..2954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 2859..2954 +
1622924208.7561917-CDS-S-dermatodea_contig1158:3146..32311622924208.7561917-CDS-S-dermatodea_contig1158:3146..3231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 3147..3231 +
1694079093.9655435-CDS-S-dermatodea_contig1158:3146..32311694079093.9655435-CDS-S-dermatodea_contig1158:3146..3231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 3147..3231 +
1622924208.7693517-CDS-S-dermatodea_contig1158:4179..42081622924208.7693517-CDS-S-dermatodea_contig1158:4179..4208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 4180..4208 +
1694079093.9756885-CDS-S-dermatodea_contig1158:4179..42081694079093.9756885-CDS-S-dermatodea_contig1158:4179..4208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1158 4180..4208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1158.1004.1

>prot_S-dermatodea_contig1158.1004.1 ID=prot_S-dermatodea_contig1158.1004.1|Name=mRNA_S-dermatodea_contig1158.1004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MHAVLIASKEDNERRAQEAEQQAAKIAELEKQLEEQVAFTNRYRAVKTSA
TGGLRKRAETLQDVFFKVDHVAKQMSDVYVSRLSVTAKGVQDHEAVAT
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mRNA from alignment at S-dermatodea_contig1158:1674..4208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1158.1004.1 ID=mRNA_S-dermatodea_contig1158.1004.1|Name=mRNA_S-dermatodea_contig1158.1004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2535bp|location=Sequence derived from alignment at S-dermatodea_contig1158:1674..4208+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAGCTCTCGGAGATGCACGCCGTTCTAATTGCTTCAAAGGAGGACAAC
GAACGGAGAGCACAAGAGGCTGAACAGCAAGCGGCCAAGATCGCGGAGGT
GACCCAGAAGTGCATCGCTCTCTTTATTCATGATCTTATACGTAAGTATA
AATATATACTTCGAAGTATGATGAACGACTACCTAAAGTGTAATATTATA
AAAGTCTGGGAATATTGTGGTGGGCGCGGAGAAATCGAGAGGACGCAAGA
AATACCTGAGAAATAGATGCCGCGGTCAGATTATAATGCAAACTGATGCC
TGAGAAGGATTAAGGCCACGGAGTGGTGAATGCTTGGGGGTGCGGAGGGT
TCGACATCGCGCCACCCCAGCCCCAGGTGATCTTCGGGGGTAGTTGGAGG
CGGGCTTCAAGCCTCGCAATAAACTGCTAGCAGGCATGAGTATACGCTTC
TTGTGTAAATTAACTGTCGTATTCGGCAGCAAGCCTCACTCTGCCCACTG
CACAACAACGCCGACAAGAAGGCGATTGCCCAACGATTCGATTATCCAAC
CTACATAATTTTAAGCCAGGAGAAGTGAGTGAGTGCCCTGTGTTGTACAG
CTGCTGGAGTCGAGGACCCAAATTTTCGCCAAAGCCCTCTGCCATGCCAT
TTCCCCTGGCGTGCTCGTGCGCGCGCTCGTGTTCCGAGGTGATGACCCCC
GCGTGTCCTATAGCAAGAGCGAGCATATAATAGTAGATGGAGCAGTTTAG
CTTACACGCGGCGGCGGACACGGGGAAGAGAGGGCTGGGAGATGAACGAG
CGGGGGGGGCGCGCGCGAGGTCGGAAAAAAACGGCGCTGTTGAGATGGCG
TGTCCAGGACGGGGTCGAGGGACGAGCGCGTAGAATTCGCTGGTGGTAGC
GGAGGGCTCCCTCTGGCTACAGCACAGCTTTCCATACGAAACACTCCGAG
AATATTCCGCATCCTTTATTGTATTGTATTATTTATTGTTAAGAAACGAT
ACCGATACGGATTGCTTGATATCGATAGATATTGTTGGAAGAACCCTAAC
CCTAACCCTAACTAATCCTTGATGAAAAGCCGTATACAACAGCCGTAGTA
TCATACCGCTGACAAGTGCTTTTGCCTGCTGTCTGGGTGACCCCTGCCCT
TGCTAACCACGACGACGGTTCTCCTCCTGGCAAAGCTGGAGAAGCAACTT
GAAGAACAGGTGGCGTTCACGAACCGATACCGTGCTGTCAAGACTTCGGC
TACTGGCGGTCTGCGCAAGAGAGCAGAAACGGTGAGCGAAACGCATTGAT
TATTCGTGATGTCTAGCTTTTGAAGCATCCACGATTCAGGAGACAAGTTG
TGCTGTACTATGAATACATGGCGACCACTCTTGAAACGTCCCATCTCAGT
CTAGCCGTCGTCGCCAATCGGTATAATTGCTGCTCTCTCTACTTCTTTCG
AATGTACCTTATCTTCCCTGTAGTTACAAGACGTGTTTTTCAAGGTGGAC
CACGTGGCGAAGCAGATGTCGGACGTGTACGTTTCACGCCTCTCGGTCAC
AGCCAAAGGTGGGACGCTCAAAGCACTTGTGCTTATAAACACGATACATC
CCTTGAGGCATGAGGTCGGGCATAGATACTTGAGTAGCGCTTGATGTCAC
GCCGTGTCTTAGTAGCATGGCCGGCTCGCCGCATGGAAAGGAAAGGTCGA
CGTTGGAGATGCGCCCTTTCCGTCATCGGGCTCTGTGTACTCTGCATATG
ACAATGCCCTAAAAAATGGACGAACGTGCTTCGTCCATAAGTTGGGGCGT
GTGATTCGGCGCGGCCTCACCGCCAAATAGTCGAAGTTGGTTTTCGTTCA
GTTAGTATGCCACTGGTATCGCAGATTCGGAAGATTCTCGGGTTTTGTTT
GTGGATAGCTGTGCTGCGAAAGGCTGCAAGTCAAGCACACGGAGACGGGC
GGGCCCTGCTCGTTGCTGGACGGCACCCCGTAACTACCGACTGGGGTGGC
CCCGCGCCGATGTACGCGTTCAGAGTGTATGTATATGGTATGCGTGTGTA
TGACGAAAACGAGCTCTTGGAGGAAAATCTCTCACGTTTTTTGCATTCAA
AAGGAAGACAAAGCCAAATTTATCATAACTCTTGGGTGGGTTTTTACCTG
AGTGGGCCAGAAGTAAGCCGTCGCCCTCTTGACCCTAGGACCCTGGTTCG
ATTCCGGTGCAGTTCATTAAAAAAGTGCAAATTCTCTAATCTAAAAACAA
TTGTCGATGCTCACGATATTCTCAATATTCGTCCTCATTCGATAAAAATA
CATATGTATTATTAGTAAATATTCATAATATTAGTCCATTGGTCTTGTAG
GGAATCGCAATTATTTGCCTTATCCTTGTCGCTAACTACGAAAAACATCG
CTCATATTCATACCTTGCCAAGCTCAATAGCTTGCCAACTATCGACGGTA
CAAGAGTAGGTCTGCACTAGGTTCCTCACCTATTGCAGCTGCACTGCCCG
TTTCAGGTGTGCAAGACCACGAAGCTGTTGCCACT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1158:1674..4208+

>mRNA_S-dermatodea_contig1158.1004.1 ID=mRNA_S-dermatodea_contig1158.1004.1|Name=mRNA_S-dermatodea_contig1158.1004.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig1158:1674..4208+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACGCCGTTCTAATTGCTTCAAAGGAGGACAACGAACGGAGAGCACA
AGAGGCTGAACAGCAAGCGGCCAAGATCGCGGAGATGCACGCCGTTCTAA
TTGCTTCAAAGGAGGACAACGAACGGAGAGCACAAGAGGCTGAACAGCAA
GCGGCCAAGATCGCGGAGCTGGAGAAGCAACTTGAAGAACAGGTGGCGTT
CACGAACCGATACCGTGCTGTCAAGACTTCGGCTACTGGCGGTCTGCGCA
AGAGAGCAGAAACGCTGGAGAAGCAACTTGAAGAACAGGTGGCGTTCACG
AACCGATACCGTGCTGTCAAGACTTCGGCTACTGGCGGTCTGCGCAAGAG
AGCAGAAACGTTACAAGACGTGTTTTTCAAGGTGGACCACGTGGCGAAGC
AGATGTCGGACGTGTACGTTTCACGCCTCTCGGTCACAGCCAAAGTTACA
AGACGTGTTTTTCAAGGTGGACCACGTGGCGAAGCAGATGTCGGACGTGT
ACGTTTCACGCCTCTCGGTCACAGCCAAAGGTGTGCAAGACCACGAAGCT
GTTGCCACTGTGTGCAAGACCACGAAGCTGTTGCCACT
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