mRNA_S-dermatodea_contig1157.1003.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1157.1003.1
Unique NamemRNA_S-dermatodea_contig1157.1003.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1157.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1157contigS-dermatodea_contig1157:16464..19708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size897
Cds size894
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1157.1003.1prot_S-dermatodea_contig1157.1003.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1157 16465..19708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.640432-CDS-S-dermatodea_contig1157:16464..166861622924208.640432-CDS-S-dermatodea_contig1157:16464..16686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 16465..16686 -
1694079093.8986974-CDS-S-dermatodea_contig1157:16464..166861694079093.8986974-CDS-S-dermatodea_contig1157:16464..16686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 16465..16686 -
1622924208.650296-CDS-S-dermatodea_contig1157:17699..178191622924208.650296-CDS-S-dermatodea_contig1157:17699..17819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 17700..17819 -
1694079093.9062529-CDS-S-dermatodea_contig1157:17699..178191694079093.9062529-CDS-S-dermatodea_contig1157:17699..17819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 17700..17819 -
1622924208.6611483-CDS-S-dermatodea_contig1157:18177..184381622924208.6611483-CDS-S-dermatodea_contig1157:18177..18438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 18178..18438 -
1694079093.9139476-CDS-S-dermatodea_contig1157:18177..184381694079093.9139476-CDS-S-dermatodea_contig1157:18177..18438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 18178..18438 -
1622924208.6749637-CDS-S-dermatodea_contig1157:19119..193621622924208.6749637-CDS-S-dermatodea_contig1157:19119..19362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 19120..19362 -
1694079093.9230626-CDS-S-dermatodea_contig1157:19119..193621694079093.9230626-CDS-S-dermatodea_contig1157:19119..19362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 19120..19362 -
1622924208.6876833-CDS-S-dermatodea_contig1157:19660..197081622924208.6876833-CDS-S-dermatodea_contig1157:19660..19708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 19661..19708 -
1694079093.9303975-CDS-S-dermatodea_contig1157:19660..197081694079093.9303975-CDS-S-dermatodea_contig1157:19660..19708Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1157 19661..19708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1157.1003.1

>prot_S-dermatodea_contig1157.1003.1 ID=prot_S-dermatodea_contig1157.1003.1|Name=mRNA_S-dermatodea_contig1157.1003.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=298bp
RQERGRSTRYSGAMSRVLWNTEKISSETRPVINGITSRPDGVLLKISGKD
NCASIASMIVTLLWAVRDQERLAGVERRLGHLVRNSDAFAALKEEHKALV
ELFLDFVRDRLQDWERAEADEEDVEAFGVGLAANVVAAFLDDHTNKVVDR
KRHEKRLSLSRGLVIAARILELGSAPANASTEDLADLRQMFRPIIYGFWL
RWPGAGLDLFVPVTVTKPDKTVIMEVNTPGDTFATEAPGRPLDIVDGARM
LLLKEHFNVLLSGGTLLADRLASRFLAEITLPQAASSADTALESPTTG
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mRNA from alignment at S-dermatodea_contig1157:16464..19708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1157.1003.1 ID=mRNA_S-dermatodea_contig1157.1003.1|Name=mRNA_S-dermatodea_contig1157.1003.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3245bp|location=Sequence derived from alignment at S-dermatodea_contig1157:16464..19708- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAAGAGAGGGGGAGATCGACCAGATATTCTGGCGCTATGTCGCGGGT
AAGTGTTACGAAACGCGTGTAATAGAGGGGCAGTCGGGAGTTCGTTGCGG
TGTCGGATAGGATTGGAAGGGTTCTGCGGTGTTCGGTAGTAGGAAACTGG
GATCGCGTCTAAGTCGTTCTGGAGAAGACCTCGCTTTGCTTCGAGGTCGC
ACGGTGTCTTACTGGATTTCGAACGCGACACACATGTTGGCCGACCCCTC
CTTCGGGCGATGCCGTAAAACGCACGGTAGGTTTGGACCGCTGCATAGGA
AATATTGAGTTTTGTCAATCCTCCCCACTGGTGACCTTATCGTCAGGTGC
TCTGGAATACGGAGAAAATCTCCAGTGAGACGCGTCCGGTGATCAACGGT
ATTACCTCGCGCCCAGATGGCGTGCTGCTGAAGATTAGCGGCAAAGACAA
TTGCGCGAGTATTGCGTCGATGATCGTAACCCTTCTCTGGGCGGTGCGCG
ACCAGGAACGCCTGGCGGGCGTCGAAAGGCGTTTGGGCCACCTTGTCCGA
AACTCGGATGCTTTCGCGGCTCTCAAGGAGGAGCACAAGGTAATGCCGAG
GCCAGGCCCGCTCACCTCCACTATGGCGTTCGTTTCGACCGCGTGTAGGC
ATCCCTCCTCGTTCCTGCGAATTCATTCCTGCCCTCTTGGCCCTCTAGTC
AGTAGACCTTCTGGATGCATGAGTGTATTCACCGTTTCTGCGTGGTTCCA
CTACCTGCTGATCTCTACTGTACGCACTAAACCTTTTCGAGTAACGTGGC
TGATGCTGAACTACCGCCTTGCTTGCTGCTTGGCGTTTCATACCATGCTC
TGGCACTTGCTGTTGTTTTTACTTCAGAACTATCTGCCCTACCGTCGTGT
ACAGGATTGTTCACCGGGAATGCATACGATCGAGGTGTCATACGATCGAA
GTGTCCCCTGCGCGAGGAAAAACAACAAGGCCGAGCGAGGTGCCAGTAAC
CCGGCTTTTGTCTTGCGGAACACACCGCCCTTTGTTTTGGTGACTCGTTT
TCGCCTTAGACCCCATCCGACAACGAATGGGATACAACGAGGCCTCATTG
GTTGGAGGGAGGCAAATATTACAGTACATACACAGCGTGCCAGGTCGTGT
CGGGCCACAACGCTCCGCTCATATTGTGCGCAATCGTGGCGGCGTCCCAA
CCATCGCTGTGGCTAATTCCATGCTTCTGTCCGACGGCTGCCTTTGTTAC
TAATTCGTGCTTTTCCGCAGGCGCTCGTCGAGCTGTTCCTTGACTTCGTT
CGAGATCGATTGCAAGACTGGGAAAGGGCGGAGGCGGACGAGGAGGACGT
GGAGGCGTTTGGGGTGGGGTTGGCAGCAAATGTGGTTGCGGCATTCCTCG
ACGACCACACCAACAAGGTCGTGGACCGAAAGAGACATGAGAAGAGACTG
AGTTTGTCGCGGGGGCTAGTGATCGCCGCGAGAATCCTTGAACTGGGTTC
TGCTCCGGCAAATGCGAGCACGGAGGACTTGGTGAGTGAGGGTTCTTGCA
GCTCGAGTTACGAAGTGAAGGCGCAAGCGTCTGATTTCTTCGTTTGGCTG
CAAGTCGAATGCACTGACTATACAGCTGATGATAAATATGACAATCCGTA
ATCACAGAAGGGATCGTTATTCTGCAAGTAACAATACCGAATTGACGCTG
GATGCCCCGAACGTACAGCGCCTGTGTTTCTTAGCGTGTACCGTCGCAGT
TCCGTGGGTTCCGATATTCAAGTTTCTGATTTAAGGTCGAGTACGGCTGT
GCTGCTGTTTCGTCTGCCTCGTTGTTGTAACGTGGTGTTATTGAGGGAAC
GCTTCGTGTACCTCTGGTCGCCGCACTGCGCCTGTTCAGGCCGACTTGCG
CCAAATGTTTAGGCCGATTATCTACGGCTTCTGGTTGCGATGGCCGGGGG
CGGGCCTGGACCTCTTCGTGCCGGTGACGGTGACAAAACCCGACAAGACG
GTCATAATGGTGAGTGTTTTTCCACGTAGACTTTGAGCATATGTTGTTCC
ACGATCTGCATCGGCATCGTGGCCCTTTGTTTCTGTAGATTGATGTGTAT
TATTGGCAGCAGATTTTCGGCCGGGTCCAAACTCCTTGCCACGCAGGTAA
CAACGGTAGCAGCGTCCTCTTCCATCGTGTATGGGTAGGCTCGACATGGC
ATAGGCATGCCATTATAACGGTAGTGCGCCCCCCTCAAAGGCATGGTCGA
TACGCATATACCAAGGCGATAGATATGCTTTCACGGCCTCAAACGTTCAT
ACAGACCGCAAATGTTGCCGGCTACAGCATGCCCTACTAAAAGTGCGATA
GCACGTCCCCACGATAGGCGAACTACAAGTTGGGCTCCTTGAACAAGCAG
CCCAAAACAGTGAAGATGTCGTAGACTCCGCTTAACGAATCACCGCGGGG
TTGTTTTGTCTATCGAGGGAAACGGCATTGAAACAAGGCAAGCGACCCGC
TTATCGGCATAAGCCGCCCGACTCTAAGGTGTAGCCAGCTCCGTAGAAGT
CGAGACAACCGAATTTGAGACAGCGCAATAACCCTCCCGTCCACTCCGTC
GGTGTACCAGCACAGGAGGGTTTACGTTTGATATCTTGATTGATTGGTTG
GTTTGACTGATTAACACACATACAACCGGCTGGCCTGCCAATAGTTGCCG
GTCCCGCTCGTGGTCCGATGATACATTGAAAAATCGAGATACCTTACGGA
ATTGCCTGTATAGTACATGGGAAGGAATTAACAGAAATAAGCGGTCTGAA
TCAGAGGGGACATACCTCGGGACTTGGGTCTGCTAAACGATATGGAGATA
GAACACCCCCGTTGGGCGTCATGCCAACCGGAGGTTATGGGTGGAACAGT
GGGCAGTATCGACTCGCTGTTATACCCGGCTGCGATTGTAGTTATTTCAG
CAAGCTGTAGCAATTCACAAAAAAGTTTTTGCACCTCCCGTGGCCTGTTT
GTGCTTTCGTAAACACTCCCAGGAAGTCAACACGCCGGGGGACACATTTG
CAACGGAAGCCCCCGGGCGGCCGCTGGATATTGTGGACGGCGCGCGAATG
CTCCTTTTGAAGGAGCACTTCAACGTGCTTCTGAGCGGTGGCACTCTCCT
CGCGGACCGCCTGGCGTCGCGTTTCCTGGCCGAGATCACACTGCCTCAGG
CTGCGAGTTCAGCGGACACGGCACTCGAGAGCCCGACAACCGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1157:16464..19708-

>mRNA_S-dermatodea_contig1157.1003.1 ID=mRNA_S-dermatodea_contig1157.1003.1|Name=mRNA_S-dermatodea_contig1157.1003.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at S-dermatodea_contig1157:16464..19708- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAAGAGAGGGGGAGATCGACCAGATATTCTGGCGCTATGTCGCGGCG
ACAAGAGAGGGGGAGATCGACCAGATATTCTGGCGCTATGTCGCGGGTGC
TCTGGAATACGGAGAAAATCTCCAGTGAGACGCGTCCGGTGATCAACGGT
ATTACCTCGCGCCCAGATGGCGTGCTGCTGAAGATTAGCGGCAAAGACAA
TTGCGCGAGTATTGCGTCGATGATCGTAACCCTTCTCTGGGCGGTGCGCG
ACCAGGAACGCCTGGCGGGCGTCGAAAGGCGTTTGGGCCACCTTGTCCGA
AACTCGGATGCTTTCGCGGCTCTCAAGGAGGAGCACAAGGTGCTCTGGAA
TACGGAGAAAATCTCCAGTGAGACGCGTCCGGTGATCAACGGTATTACCT
CGCGCCCAGATGGCGTGCTGCTGAAGATTAGCGGCAAAGACAATTGCGCG
AGTATTGCGTCGATGATCGTAACCCTTCTCTGGGCGGTGCGCGACCAGGA
ACGCCTGGCGGGCGTCGAAAGGCGTTTGGGCCACCTTGTCCGAAACTCGG
ATGCTTTCGCGGCTCTCAAGGAGGAGCACAAGGCGCTCGTCGAGCTGTTC
CTTGACTTCGTTCGAGATCGATTGCAAGACTGGGAAAGGGCGGAGGCGGA
CGAGGAGGACGTGGAGGCGTTTGGGGTGGGGTTGGCAGCAAATGTGGTTG
CGGCATTCCTCGACGACCACACCAACAAGGTCGTGGACCGAAAGAGACAT
GAGAAGAGACTGAGTTTGTCGCGGGGGCTAGTGATCGCCGCGAGAATCCT
TGAACTGGGTTCTGCTCCGGCAAATGCGAGCACGGAGGACTTGGCGCTCG
TCGAGCTGTTCCTTGACTTCGTTCGAGATCGATTGCAAGACTGGGAAAGG
GCGGAGGCGGACGAGGAGGACGTGGAGGCGTTTGGGGTGGGGTTGGCAGC
AAATGTGGTTGCGGCATTCCTCGACGACCACACCAACAAGGTCGTGGACC
GAAAGAGACATGAGAAGAGACTGAGTTTGTCGCGGGGGCTAGTGATCGCC
GCGAGAATCCTTGAACTGGGTTCTGCTCCGGCAAATGCGAGCACGGAGGA
CTTGGCCGACTTGCGCCAAATGTTTAGGCCGATTATCTACGGCTTCTGGT
TGCGATGGCCGGGGGCGGGCCTGGACCTCTTCGTGCCGGTGACGGTGACA
AAACCCGACAAGACGGTCATAATGGCCGACTTGCGCCAAATGTTTAGGCC
GATTATCTACGGCTTCTGGTTGCGATGGCCGGGGGCGGGCCTGGACCTCT
TCGTGCCGGTGACGGTGACAAAACCCGACAAGACGGTCATAATGGAAGTC
AACACGCCGGGGGACACATTTGCAACGGAAGCCCCCGGGCGGCCGCTGGA
TATTGTGGACGGCGCGCGAATGCTCCTTTTGAAGGAGCACTTCAACGTGC
TTCTGAGCGGTGGCACTCTCCTCGCGGACCGCCTGGCGTCGCGTTTCCTG
GCCGAGATCACACTGCCTCAGGCTGCGAGTTCAGCGGACACGGCACTCGA
GAGCCCGACAACCGGGGAAGTCAACACGCCGGGGGACACATTTGCAACGG
AAGCCCCCGGGCGGCCGCTGGATATTGTGGACGGCGCGCGAATGCTCCTT
TTGAAGGAGCACTTCAACGTGCTTCTGAGCGGTGGCACTCTCCTCGCGGA
CCGCCTGGCGTCGCGTTTCCTGGCCGAGATCACACTGCCTCAGGCTGCGA
GTTCAGCGGACACGGCACTCGAGAGCCCGACAACCGGG
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