mRNA_S-dermatodea_contig11569.1002.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11569.1002.1
Unique NamemRNA_S-dermatodea_contig11569.1002.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 3.560e-81
Identity = 137/264 (51.89%), Postives = 169/264 (64.02%), Query Frame = 1 
Query:    7 IYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQWLPASAYPDTGERSGFVKR------ASGLDDEPATCDDGC-------AMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKFDKEWAGHLRKSGERGDGPLDWSGCSLAWNESVQHME 759
            +YG L DK T QPL R  A +A+K+LR HI  +C SD     LYFE  KD  T  P  RC+RGTNDLEGYHLHMRLL+AWCISPRLAH +L EYNYRWNLRQ++KNRG+D AVG  YDQP++EAIQRMT KL+G+ +Y QWLP SAY DTGERSGFV+         G  D       G        A  D  +PL  ++ SA   AKMQGV+VP +P ++  E+ KF   W   +  +G +    LD+   +L WN++V  ME
Sbjct:  224 LYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQT--LLDFDSFALEWNKAVSLME 485
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 1.590e-76
Identity = 137/264 (51.89%), Postives = 169/264 (64.02%), Query Frame = 1 
Query:    7 IYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQWLPASAYPDTGERSGFVKR------ASGLDDEPATCDDGC-------AMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKFDKEWAGHLRKSGERGDGPLDWSGCSLAWNESVQHME 759
            +YG L DK T QPL R  A +A+K+LR HI  +C SD     LYFE  KD  T  P  RC+RGTNDLEGYHLHMRLL+AWCISPRLAH +L EYNYRWNLRQ++KNRG+D AVG  YDQP++EAIQRMT KL+G+ +Y QWLP SAY DTGERSGFV+         G  D       G        A  D  +PL  ++ SA   AKMQGV+VP +P ++  E+ KF   W   +  +G +    LD+   +L WN++V  ME
Sbjct:  797 LYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLEILGGAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQT--LLDFDSFALEWNKAVSLME 1058
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 2.790e-74
Identity = 127/230 (55.22%), Postives = 155/230 (67.39%), Query Frame = 1 
Query:    7 IYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQWLPASAYPDTGERSGFVKR-------ASGLDD--------EPATCDDGCAMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKF 651
            +YG L DK T QPL R  A +A+K+LR HI  +C SD     LYFE  KD  T  P  RC+RGTNDLEG+HLHMRLL+AWCISPRLAH +L EYNYRWNLRQ++KNRG+D AVG  YDQP++EAIQRMT KL+G+ +Y QWLP SAY DTGERSGFV+          G D         E ++ D   A V+  +PL  ++ SA   AKMQGV+VP +P ++  E  KF
Sbjct:  399 LYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRSIFPSEVGGGGTDSVLEILGGAENSSMDP--ASVEEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAENSKF 626
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.420e-49
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1 
Query:    1 MKIYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMR-LLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGE-PEYPQWLPASAYPDTGERSGFVKR----ASGLD--DEPATCDDGCAMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKFDKEWAGHLRKSGERG 696
            ++ +  + D  +G+ LLRP A  AV+ LR HI + CLSDPE +PLY+   K+ A G+ T RCVRGTN  EGYH ++R LL  +C SP LAH +L E+NYRWN+R A+KNRG+   VG  +DQ  IE IQR T   + + P +P+W+ A    DTGE+SG  +     ASG D   EP+   D   +  + +P+  ++ SA +YA+M    +P  P  T  E+ K+  E    L +  +RG
Sbjct:  272 IRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSA-GITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRKYASELNSQLCRGSQRG 510
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.550e-47
Identity = 106/262 (40.46%), Postives = 146/262 (55.73%), Query Frame = 1 
Query:    7 IYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMR-LLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGE-PEYPQWLPASAYPDTGERSGFVKR----ASGLDDEPATCDDGCAMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKFDKEWAGHLRKSGE-RGDGPL----DWSGCSLAWNESVQHME 759
            ++G++ D  +G+ LLR  A   V  L  HI   CLSDPE +PLY+   ++ A G+ T RCVRGTN  EGYH ++R LL ++C SP LAH +L E+N+RWN+R A+KNRG+   VG  +DQ   E IQR T   + + P +P+W+ A    DTGERSG  +     ASG  D P    D  A   H IP+  ++ SA +YA+   + +P  P  T  ER KF  E   +L   GE RG   +    ++   S  WN     +E
Sbjct:    1 MFGNVVDAKSGEKLLRSDAMKDVNLLLKHIETGCLSDPEGVPLYYPTGQN-AAGITTHRCVRGTNCTEGYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPDNPLFPEWVSALDVADTGERSGLSQSMWGPASG-GDAPGDLVDEQASPQHAIPMPKLTHSAKKYAETMNIGMPCTPVHTGAERRKFTSEMNSYLYVPGEARGRRQIYQTINFDRWSHEWNNHCAQIE 260
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.270e-45
Identity = 103/266 (38.72%), Postives = 150/266 (56.39%), Query Frame = 1 
Query:    1 MKIYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMR-LLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGE-PEYPQWLPASAYPDTGERSGFVKR----ASGLD--DEPATCDDGCAMVDHVIPLETISTSAFEYAKMQGVRVPPLPFSTKEEREKFDKEWAGHLRKSGE-RGDGP----LDWSGCSLAWNESVQHME 759
            ++ +  + D  +G+ LLRP A  AV+ LR HI + CLSDPE +PLY+ ++     G+ T RCVRGTN  EGYH ++R LL  +C SP LAH +L E+NYRWN+R A+KNRG+   VG  +DQ  IE IQR T   + + P +P+W+ A    DTGE+SG  +     ASG D   EP+   D   +  + +P+  ++ SA +YA+M    +P  P  T  E+  F  E    L   G+  G       +++   + AWN+    +E
Sbjct:  272 IRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKS----AGITTRRCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDVPSEPSDLVDEQGLAQNAVPMPKLTHSAKKYAQMMHAGMPVTPVHTGAEKRNFASELNSQLYLPGQPEGRNEKYQNINFDAWAGAWNQHCAKIE 533
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 4.210e-42
Identity = 95/213 (44.60%), Postives = 127/213 (59.62%), Query Frame = 1 
Query:   10 YGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIA-WCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKL-FGEPEYPQWLPASAYPDTGERSGFVK---------RASGLDDEPATC-DDGCAMVDHVIPLETISTSAFEYAKMQGVRVP 612
            +G   D  +G+ LLRP A  AV++LR HI  +CLSDP+ + +YF   K+   GL   RCVRGTND+EGYH ++R L+A +C SP LA  +L E+NYRWNLR  IKNRG+  A+G  Y+Q L+E+IQR T       P +P+W  A    DTGER G  +            G+ D  A C DDG + V+   P+  ++ SA  YAKM G  +P
Sbjct:  595 FGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKH-GLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDGEVWGIADNDAFCTDDGDSDVNGRTPMSDLTLSAKMYAKMMGESMP 806
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.300e-30
Identity = 83/220 (37.73%), Postives = 112/220 (50.91%), Query Frame = 1 
Query:   10 YGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQWLPASAYPDTGERSGFVKRASGLDDEPATCDDG----CAMVDHV------IPLETISTSAFEYAKMQGVRVPPLPFSTKEE 639
            +G+  D  + + LLRP +  AV+ LR HI A CLSDP+ + +Y+   K    GL   RCVRGTND+EGYHL      ++  SP LA  +L E+N+RWNL+  +KNR  DP+                       P +PQW  A    DTGERSG  +   G ++  A    G    CA VD V       PL  ++ SA  YA++ G ++P     TKEE
Sbjct:  887 FGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKT-TDGLVRYRCVRGTNDVEGYHL-----ASYSASPALAQSVLLEFNFRWNLKMMVKNRDWDPSF----------------------PVFPQWQAAVDSVDTGERSGLGRSLWGGENAKAWNGAGHEASCAEVDDVGDVNGRTPLSHLALSAKLYARIMGEKMPETRVYTKEE 1078
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BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.020e-29
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 1 
Query:   10 YGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMRLLIA-WCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMT 393
            +G+  D  + + LLRP +  AV  LR HI A CLSDP+ + +Y+   K    GL   RCVRGTND+EGYH ++R L+A +C SP LA  +L E+N+RWNL+  +KNRG+   +G  Y+Q L+E IQR T
Sbjct:  639 FGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKT-TDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
[Close]
BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 120 bits (301), Expect = 2.360e-27
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:   10 YGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEAKDPATGLPTLRCVRGTNDLEGYHLHMR-LLIAWCISPRLAHYILSEYNYRWNLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQW 429
            +  + D  T +PL R      V+ LR HI   CLSD  +IPLYF E +  + GLP  RC RGTN  EGYH HMR LL  +  SP L H +L E+N+RWN+R A+KNRG+    G  Y Q L++ I R +  L     Y  W
Sbjct:  529 FQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRT-SQGLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11569.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE3.560e-8151.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE1.590e-7651.893'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.790e-7455.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE3.420e-4942.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U3_9PHAE1.550e-4740.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE1.270e-4538.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE4.210e-4244.603'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4M0_9PHAE6.300e-3037.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI1.020e-2948.063'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1Y2A9B5_9FUNG2.360e-2744.683'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11569contigS-dermatodea_contig11569:3407..4286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size760
Cds size759
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.6034687-CDS-S-dermatodea_contig11569:3406..37901622924208.6034687-CDS-S-dermatodea_contig11569:3406..3790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 3407..3790 +
1694079093.8795068-CDS-S-dermatodea_contig11569:3406..37901694079093.8795068-CDS-S-dermatodea_contig11569:3406..3790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 3407..3790 +
1622924208.615512-CDS-S-dermatodea_contig11569:3911..42861622924208.615512-CDS-S-dermatodea_contig11569:3911..4286Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 3912..4286 +
1694079093.8910165-CDS-S-dermatodea_contig11569:3911..42861694079093.8910165-CDS-S-dermatodea_contig11569:3911..4286Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 3912..4286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11569.1002.1prot_S-dermatodea_contig11569.1002.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11569 3407..4286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11569.1002.1

>prot_S-dermatodea_contig11569.1002.1 ID=prot_S-dermatodea_contig11569.1002.1|Name=mRNA_S-dermatodea_contig11569.1002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=253bp
MKIYGSLQDKHTGQPLLRPVASDAVKKLRSHIAANCLSDPEEIPLYFEEA
KDPATGLPTLRCVRGTNDLEGYHLHMRLLIAWCISPRLAHYILSEYNYRW
NLRQAIKNRGMDPAVGRCYDQPLIEAIQRMTLKLFGEPEYPQWLPASAYP
DTGERSGFVKRASGLDDEPATCDDGCAMVDHVIPLETISTSAFEYAKMQG
VRVPPLPFSTKEEREKFDKEWAGHLRKSGERGDGPLDWSGCSLAWNESVQ
HME
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mRNA from alignment at S-dermatodea_contig11569:3407..4286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11569.1002.1 ID=mRNA_S-dermatodea_contig11569.1002.1|Name=mRNA_S-dermatodea_contig11569.1002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at S-dermatodea_contig11569:3407..4286+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGATCTACGGCAGCCTCCAAGACAAGCACACCGGACAGCCCTTGCT
GCGGCCAGTGGCATCGGATGCGGTCAAGAAGTTGCGCTCGCACATCGCGG
CTAACTGCCTTAGTGATCCAGAGGAAATTCCTTTGTATTTCGAGGAAGCA
AAAGATCCGGCGACCGGCCTGCCCACGTTGCGCTGCGTACGCGGGACGAA
CGACCTGGAGGGGTACCACCTGCACATGCGTCTCCTGATTGCCTGGTGCA
TATCGCCTAGGCTGGCGCACTACATTCTCTCAGAGTACAACTATCGGTGG
AACCTGAGGCAGGCGATCAAGAACAGGGGCATGGATCCTGCAGTTGGACG
GTGCTATGACCAACCGCTGATAGAAGCTATTCAGGTATCTCGTAGGGGGT
TGTGTGCGATTAGTTTCGTCGGTTACGTTCAAGATAATTGTTTACGGTCA
CGTTTGTTTTTCTCGCACACTCGTAACTTGTCAACCTCCCCCGGTTTGGC
TGCAGAGGATGACGCTCAAGTTGTTCGGCGAGCCGGAATACCCCCAGTGG
CTTCCCGCCAGCGCATACCCTGACACGGGAGAGAGGAGCGGATTCGTCAA
GCGTGCTTCCGGCCTCGACGACGAGCCGGCTACCTGCGACGATGGCTGCG
CGATGGTGGACCACGTGATTCCGCTAGAGACGATCTCAACCTCAGCCTTC
GAGTACGCGAAAATGCAAGGGGTAAGGGTGCCGCCCTTGCCGTTCTCAAC
GAAAGAGGAGCGTGAAAAGTTCGACAAGGAGTGGGCGGGGCACTTGCGCA
AGAGCGGGGAGCGGGGAGATGGGCCTCTGGATTGGAGCGGCTGCAGTTTG
GCATGGAACGAGTCGGTGCAGCACATGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11569:3407..4286+

>mRNA_S-dermatodea_contig11569.1002.1 ID=mRNA_S-dermatodea_contig11569.1002.1|Name=mRNA_S-dermatodea_contig11569.1002.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at S-dermatodea_contig11569:3407..4286+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGATCTACGGCAGCCTCCAAGACAAGCACACCGGACAGCCCTTGCT
GCGGCCAGTGGCATCGGATGCGGTCAAGAAGTTGCGCTCGCACATCGCGG
CTAACTGCCTTAGTGATCCAGAGGAAATTCCTTTGTATTTCGAGGAAGCA
AAAGATCCGGCGACCGGCCTGCCCACGTTGCGCTGCGTACGCGGGACGAA
CGACCTGGAGGGGTACCACCTGCACATGCGTCTCCTGATTGCCTGGTGCA
TATCGCCTAGGCTGGCGCACTACATTCTCTCAGAGTACAACTATCGGTGG
AACCTGAGGCAGGCGATCAAGAACAGGGGCATGGATCCTGCAGTTGGACG
GTGCTATGACCAACCGCTGATAGAAGCTATTCAGATGAAGATCTACGGCA
GCCTCCAAGACAAGCACACCGGACAGCCCTTGCTGCGGCCAGTGGCATCG
GATGCGGTCAAGAAGTTGCGCTCGCACATCGCGGCTAACTGCCTTAGTGA
TCCAGAGGAAATTCCTTTGTATTTCGAGGAAGCAAAAGATCCGGCGACCG
GCCTGCCCACGTTGCGCTGCGTACGCGGGACGAACGACCTGGAGGGGTAC
CACCTGCACATGCGTCTCCTGATTGCCTGGTGCATATCGCCTAGGCTGGC
GCACTACATTCTCTCAGAGTACAACTATCGGTGGAACCTGAGGCAGGCGA
TCAAGAACAGGGGCATGGATCCTGCAGTTGGACGGTGCTATGACCAACCG
CTGATAGAAGCTATTCAGAGGATGACGCTCAAGTTGTTCGGCGAGCCGGA
ATACCCCCAGTGGCTTCCCGCCAGCGCATACCCTGACACGGGAGAGAGGA
GCGGATTCGTCAAGCGTGCTTCCGGCCTCGACGACGAGCCGGCTACCTGC
GACGATGGCTGCGCGATGGTGGACCACGTGATTCCGCTAGAGACGATCTC
AACCTCAGCCTTCGAGTACGCGAAAATGCAAGGGGTAAGGGTGCCGCCCT
TGCCGTTCTCAACGAAAGAGGAGCGTGAAAAGTTCGACAAGGAGTGGGCG
GGGCACTTGCGCAAGAGCGGGGAGCGGGGAGATGGGCCTCTGGATTGGAG
CGGCTGCAGTTTGGCATGGAACGAGTCGGTGCAGCACATGGAGAGGATGA
CGCTCAAGTTGTTCGGCGAGCCGGAATACCCCCAGTGGCTTCCCGCCAGC
GCATACCCTGACACGGGAGAGAGGAGCGGATTCGTCAAGCGTGCTTCCGG
CCTCGACGACGAGCCGGCTACCTGCGACGATGGCTGCGCGATGGTGGACC
ACGTGATTCCGCTAGAGACGATCTCAACCTCAGCCTTCGAGTACGCGAAA
ATGCAAGGGGTAAGGGTGCCGCCCTTGCCGTTCTCAACGAAAGAGGAGCG
TGAAAAGTTCGACAAGGAGTGGGCGGGGCACTTGCGCAAGAGCGGGGAGC
GGGGAGATGGGCCTCTGGATTGGAGCGGCTGCAGTTTGGCATGGAACGAG
TCGGTGCAGCACATGGAG
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