mRNA_S-dermatodea_contig11568.999.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11568.999.1
Unique NamemRNA_S-dermatodea_contig11568.999.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11568.999.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.880e-76
Identity = 118/214 (55.14%), Postives = 151/214 (70.56%), Query Frame = 1 
Query:    1 LLATMADALVDFFATKGGDRRWKDGVTEEEIKPLTEFAAALPDPFANFYTEPIRPGESGCFDLEEDVDELARCC*TGAATENGGGVGVPVKNDGD*CCLWDAAACGGLNIRPTKGGAGLALRTASVRIALQKIVEFLSPTGRLTEFSSGELYESKEHNMVEKLAGCVWAMDMPEDVTRLYYLCAVRNICGRHKYSQQASLPWLAEVLGMRLRLY 642
            +LA + DA+ D FA + G+R W+ GVTE E++ L   AA L DPFA F   PIR G++GCF+L ED DELA  C  GAAT +GG VG+PV NDG   C+W A A G L+ R + GGA LALRTA++R+AL K  EFLS  G L E+ S +L++ KEH+MV KLAG  W  ++  DV R+YYLCAVRN CG  KYSQQA +PW AEVLG+++R++
Sbjct:    1 MLARIKDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVF 214
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BLAST of mRNA_S-dermatodea_contig11568.999.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 5.920e-75
Identity = 119/215 (55.35%), Postives = 154/215 (71.63%), Query Frame = 1 
Query:    1 LLATMADALVDFFATK-GGDRRWKDGVTEEEIKPLTEFAAALPDPFANFYTEPIRPGESGCFDLEEDVDELARCC*TGAATENGGGVGVPVKNDGD*CCLWDAAACGGLNIRPTKGGAGLALRTASVRIALQKIVEFLSPTGRLTEFSSGELYESKEHNMVEKLAGCVWAMDMPEDVTRLYYLCAVRNICGRHKYSQQASLPWLAEVLGMRLRLY 642
            +LAT+ D++  FFA + GG   WK+GV+  E++ L    A++PDPFA F   PI   +SGCF+L ED+D+LA  C  GAAT +GGGVGVPV N+G   C W A A G LN R + GGA LALRT ++R+AL K  EFLS  G L E+ SG+L+++KEH+MV KLAG VW M+M  DV RLYYLCA+R+ CG  KYSQQA LPW AEVLG+++R++
Sbjct:    8 VLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVF 222
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BLAST of mRNA_S-dermatodea_contig11568.999.1 vs. uniprot
Match: D7FV00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV00_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.420e-49
Identity = 87/165 (52.73%), Postives = 109/165 (66.06%), Query Frame = 1 
Query:    1 LLATMADALVDFFATKGGDRRWKDGVTEEEIKPLTEFAAALPDPFANFYTEPIRPGESGCFDLEEDVDELARCC*TGAATENGGGVGVPVKNDGD*CCLWDAAACGGLNIRPTKGGAGLALRTASVRIALQKIVEFLSPTGRLTEFSSGELYESKEHNMVEKLAG 495
            + A + DA+ D FA + G+R W  GV E +++ L   AA+LP PFA F   PIR G++GCF+L ED DELA  C  GAAT +GG VGVPV ND    C+W A A G LN R + GG  LALRTA++R+AL K  EFLS  G L E+ S  L++ KEH+MV KLAG
Sbjct:    3 MFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAG 167
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11568.999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0G8_ECTSI1.880e-7655.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT31_9PHAE5.920e-7555.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV00_ECTSI1.420e-4952.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11568contigS-dermatodea_contig11568:2552..3538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_002310.1
Hectar predicted targeting categoryother localisation
Exons2
Model size642
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11568.999.1prot_S-dermatodea_contig11568.999.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11568 2969..3526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.4377775-UTR-S-dermatodea_contig11568:2551..29681622924208.4377775-UTR-S-dermatodea_contig11568:2551..2968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11568 2552..2968 -
1694079093.8003507-UTR-S-dermatodea_contig11568:2551..29681694079093.8003507-UTR-S-dermatodea_contig11568:2551..2968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11568 2552..2968 -
1622924208.476276-UTR-S-dermatodea_contig11568:3526..35381622924208.476276-UTR-S-dermatodea_contig11568:3526..3538Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11568 3527..3538 -
1694079093.8272054-UTR-S-dermatodea_contig11568:3526..35381694079093.8272054-UTR-S-dermatodea_contig11568:3526..3538Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11568 3527..3538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.454072-CDS-S-dermatodea_contig11568:2968..30281622924208.454072-CDS-S-dermatodea_contig11568:2968..3028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 2969..3028 -
1694079093.8095465-CDS-S-dermatodea_contig11568:2968..30281694079093.8095465-CDS-S-dermatodea_contig11568:2968..3028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 2969..3028 -
1622924208.4672809-CDS-S-dermatodea_contig11568:3373..35261622924208.4672809-CDS-S-dermatodea_contig11568:3373..3526Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 3374..3526 -
1694079093.817702-CDS-S-dermatodea_contig11568:3373..35261694079093.817702-CDS-S-dermatodea_contig11568:3373..3526Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 3374..3526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11568.999.1

>prot_S-dermatodea_contig11568.999.1 ID=prot_S-dermatodea_contig11568.999.1|Name=mRNA_S-dermatodea_contig11568.999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
MADALVDFFATKGGDRRWKDGVTEEEIKPLTEFAAALPDPFANFYTEPIR
PGESGCFDLEEDVDELARCC*
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mRNA from alignment at S-dermatodea_contig11568:2552..3538-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11568.999.1 ID=mRNA_S-dermatodea_contig11568.999.1|Name=mRNA_S-dermatodea_contig11568.999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=987bp|location=Sequence derived from alignment at S-dermatodea_contig11568:2552..3538- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTATTGGCAACGATGGCAGACGCACTCGTCGACTTCTTTGCTACGAAGGG
TGGCGACCGCAGGTGGAAGGATGGCGTGACGGAGGAAGAGATAAAACCTC
TGACTGAGTTTGCTGCAGCTCTGCCCGATCCCTTTGCCAACTTCTACACT
GAACCCATTCGACCGGTGAGACCCGTTGCCCGTTTTGCGAGGTACATGTA
GTTGCTTGACATCAAGTCCGCATTATTTCCAACTTCAAGCGATGGTATCG
AGCGAAACGTTTTGTGAAAGTTCGTATCCCGTCTGGTGTCAGCAATCGCA
TATTTTGCCGCAATATACTTTGTATCACTTGTGACTTGGAGGTTATTGTT
GTGGGGTAGTTGGGATATCCACGAGCCTGTTAGCCCCGTAGAGATTGGGT
ACCTCCAGTTTGTCCACAATGAGAAACTTCATCAAAATGTCAGTACGTAG
AGCCGTACTCTGAGAGTGTCCCATACCGCCACGAAATCATTTAACGGTAA
CTATATGCAGGGAGAGTCTGGATGTTTTGACCTTGAAGAAGACGTCGACG
AGCTAGCAAGGTGCTGTTAGACAGGGGCGGCAACAGAGAACGGCGGGGGG
GTGGGAGTTCCCGTTAAAAACGATGGCGATTGATGTTGCCTCTGGGATGC
AGCTGCATGTGGGGGACTCAACATTAGGCCTACCAAGGGGGGGGCGGGGC
TTGCCCTCCGTACAGCCAGCGTTCGGATTGCGCTGCAAAAAATCGTAGAG
TTCCTGAGCCCCACCGGACGCCTCACGGAGTTCAGTTCGGGCGAGCTGTA
CGAAAGCAAGGAACACAACATGGTGGAGAAACTTGCGGGTTGTGTGTGGG
CGATGGACATGCCGGAGGACGTGACTCGGTTGTACTACCTCTGTGCTGTC
AGGAACATATGTGGTCGTCACAAGTACAGCCAGCAGGCGAGCCTTCCTTG
GCTCGCAGAGGTCCTTGGCATGCGACTCCGACTGTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11568:2552..3538-

>mRNA_S-dermatodea_contig11568.999.1 ID=mRNA_S-dermatodea_contig11568.999.1|Name=mRNA_S-dermatodea_contig11568.999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig11568:2552..3538- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGACGCACTCGTCGACTTCTTTGCTACGAAGGGTGGCGACCGCAG
GTGGAAGGATGGCGTGACGGAGGAAGAGATAAAACCTCTGACTGAGTTTG
CTGCAGCTCTGCCCGATCCCTTTGCCAACTTCTACACTGAACCCATTCGA
CCGATGGCAGACGCACTCGTCGACTTCTTTGCTACGAAGGGTGGCGACCG
CAGGTGGAAGGATGGCGTGACGGAGGAAGAGATAAAACCTCTGACTGAGT
TTGCTGCAGCTCTGCCCGATCCCTTTGCCAACTTCTACACTGAACCCATT
CGACCGGGAGAGTCTGGATGTTTTGACCTTGAAGAAGACGTCGACGAGCT
AGCAAGGTGCTGTTAGGGAGAGTCTGGATGTTTTGACCTTGAAGAAGACG
TCGACGAGCTAGCAAGGTGCTGTTAG
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