mRNA_S-dermatodea_contig11568.1000.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11568.1000.1
Unique NamemRNA_S-dermatodea_contig11568.1000.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A1R1S7L8_9ACTN (Esterase n=1 Tax=Streptomyces sparsogenes DSM 40356 TaxID=1331668 RepID=A0A1R1S7L8_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 5.070e-21
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 PQDTPRGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRG 351
            P  T R  G AGP P + + HGGGF V SPDV     F++ LC R   VVVS DYRL+ E PFPAGL DC + L      GD  LD  A  + + + GDS G+    ALT++A+ RG
Sbjct:    2 PLRTYRPEGAAGPLPAVYSLHGGGFVVGSPDVDH--AFNLWLCRRLDAVVVSPDYRLAPEHPFPAGLEDCYAGL-CLLAEGDAGLDVAA--DRIAVLGDSSGAGMATALTMLARDRG 113          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: UPI000826E49A (alpha/beta hydrolase n=2 Tax=Streptomyces sparsogenes TaxID=67365 RepID=UPI000826E49A)

HSP 1 Score: 95.5 bits (236), Expect = 1.460e-20
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 PQDTPRGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRG 351
            P  T R  G AGP P + + HGGGF V SPDV     F++ LC R   VVVS DYRL+ E PFPAGL DC + L      GD  LD  A  + + + GDS G+    ALT++A+ RG
Sbjct:   66 PLRTYRPEGAAGPLPAVYSLHGGGFVVGSPDVDH--AFNLWLCRRLDAVVVSPDYRLAPEHPFPAGLEDCYAGL-CLLAEGDAGLDVAA--DRIAVLGDSSGAGMATALTMLARDRG 177          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A7S3ZD40_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZD40_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.620e-20
Identity = 61/151 (40.40%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   10 TPRGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAGEQCYPCDKLPSTVRSLTGQG 462
            TP    ++G    ++  HGGGF +++   P Y   +  +C R  + VV  D+R S E PFPA L+DC SAL WA        D   P   V+LFGDS G   + A  L AKRRG LSA+KGV+A+   I G  C+P ++ PS      G G
Sbjct:  105 TPSSGDISG---TVVFFHGGGFCMYTKASPVYVRAAKEIC-RVGLRVVVPDFRSSYEHPFPAQLHDCYSALLWAA-------DKFGP---VVLFGDSAGGTLICAAALFAKRRGELSAIKGVWALDAAIYG--CFPDERFPSIQYYEGGYG 239          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A1Q7T7M5_9CHLR (Abhydrolase_3 domain-containing protein n=2 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1Q7T7M5_9CHLR)

HSP 1 Score: 93.6 bits (231), Expect = 1.580e-19
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   16 RGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYR--LSSE--EPFPAGLNDCMSALEWACVGGD--GALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAG 402
            R + V GP PC +  HGGG  +       +  +   L A   +VV+ VD+R   S+E   PFPAGLNDC SALEW     D  G LD T+    V+L G+S G+N VLA  L AKR G L A+ GV+A+ P+I+G
Sbjct:  112 RSANVTGPLPCTVYIHGGGMTILDAFAKVHQRWCEDLAATG-MVVIGVDFRNAYSAEGMHPFPAGLNDCTSALEWV---NDHRGQLDITS----VVLQGESGGANLVLATALKAKRDGHLDAINGVYAMVPYISG 238          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A365YR75_9ACTN (Esterase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A365YR75_9ACTN)

HSP 1 Score: 92.0 bits (227), Expect = 3.310e-19
Identity = 54/117 (46.15%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   16 RGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVI-----LFGDSCGSNFVLALTLMAKRRG 351
            R +   GP P LL+ HGGGF + SPDV      +VRLC     VVVSVDYRL+ E PFPA L+DC +AL W        L   AP  GV      L+GDS G+     L L+A+ RG
Sbjct:   69 RPADARGPLPALLSMHGGGFVLGSPDVDHES--NVRLCRELPAVVVSVDYRLAPEHPFPAALDDCWTALRW--------LADNAPALGVAPDRIGLWGDSAGAGLAAGLALLARDRG 175          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: K3ZIU4_SETIT (Abhydrolase_3 domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K3ZIU4_SETIT)

HSP 1 Score: 92.0 bits (227), Expect = 5.670e-19
Identity = 60/152 (39.47%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   43 PCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGE--GVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAGEQCYPCD-KLPSTVRSLTGQGWAPTYPSVA 489
            P L+  HGG F   S   P Y  F   L AR  ++VVSV+YRL+ E PFPAG  D + ALEWA  GG G    +  G+   V L G+S G N    + +MA      +AV+G   +    +G +  P D +LP  V SL G+ WA   P  A
Sbjct:  138 PLLVYFHGGAFVTQSAAAPAYQPFLSTLAARAGLLVVSVNYRLAPEHPFPAGYEDSLRALEWAVAGGGGDPWLSRHGDLGRVFLAGESAGGNIAHNVAMMAAAGEAAAAVEGAAVLHALFSGRE--PVDGELPMWVESL-GKLWAVVCPEAA 286          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A0L8KU95_STRVR (Abhydrolase_3 domain-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0L8KU95_STRVR)

HSP 1 Score: 90.5 bits (223), Expect = 1.840e-18
Identity = 59/152 (38.82%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   16 RGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEE----PFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAGEQCYPCD----KLPSTVRS 447
            R S V+GP P ++  HGGG A+ S   P Y  +   L A   V+VV V++R ++ +    PFPAGL+DC SALEW      GA         V + GDS G+N  LA+T+ AKR G L  + G +A++P+I+G   +       +LPS V +
Sbjct:  111 RPSDVSGPLPAVVFLHGGGMALLSAAGPLYLRWYDELAATG-VIVVGVEFRNAAGKLGPHPFPAGLDDCFSALEWV-----GAHREDLGVTRVAVAGDSGGANLALAVTIKAKREGRLDLIDGTYALAPYISGAYGWSVQDKARELPSLVEN 256          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A7S1LUZ2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LUZ2_ALECA)

HSP 1 Score: 88.2 bits (217), Expect = 4.800e-18
Identity = 55/130 (42.31%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   37 PFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYR---LSSEEP-----FPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAG 402
            P PC++  HGGG A  +P  P +  F  R  A++ V V  VD+R   L S        FPAGLNDCMSALEW     +    +   GE V++ G+S G N  LAL +  KR G LS  +G +A+ P+IAG
Sbjct:   19 PLPCIIYLHGGGMAAGNPMGPPWTRFG-RAIAQQGVCVALVDFRNYALPSRPGKKIGRFPAGLNDCMSALEWV----NENKASLGVGERVVIAGESGGGNLTLALAMKCKRDGKLSLFQGFYALCPYIAG 143          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: A0A235G131_9NOCA (Acetyl esterase/lipase n=1 Tax=Rhodococcus sp. OK302 TaxID=1882769 RepID=A0A235G131_9NOCA)

HSP 1 Score: 89.4 bits (220), Expect = 5.450e-18
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = 1
Query:   28 VAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYR----LSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAGEQCYPCDK----LPSTVRS 447
             A   P ++  HGGG  + + D P +  +   L +   +VV++VD+R    +    PFPAGLNDCMSALEW  V   G+L  ++    V++ G+S G N  LA+ L AKR G+L ++ GV+A+ PFI+G   +P ++    LPS + +
Sbjct:  119 AANAIPGVVYLHGGGMTMLAVDNPVHQQWCEDLVSAG-MVVIAVDFRNAGGVRGPHPFPAGLNDCMSALEWIHVH-RGSLGISS----VVVQGESGGGNLALAVALTAKRNGVLESIDGVYAMVPFISGGYGWPDERKLRELPSMIEN 260          
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Match: UPI000EF6C821 (alpha/beta hydrolase n=2 Tax=Natronorubrum halophilum TaxID=1702106 RepID=UPI000EF6C821)

HSP 1 Score: 88.2 bits (217), Expect = 7.890e-18
Identity = 47/103 (45.63%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   43 PCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVVVSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDSCGSNFVLALTLMAKRRG 351
            P +L  HGGG+ +   D   +DG   +L A     VVSVDYRL+ E PFPAGL DC +ALEWA    D A +  A  + ++L GDS G N   A  L+A+ RG
Sbjct:   83 PLVLYFHGGGWVIGGVDT--HDGTCRKLAAESGYPVVSVDYRLAPEHPFPAGLEDCYAALEWAA---DAASELAADPDRIVLAGDSAGGNLAAATALLARDRG 180          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11568.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R1S7L8_9ACTN5.070e-2147.01Esterase n=1 Tax=Streptomyces sparsogenes DSM 4035... [more]
UPI000826E49A1.460e-2047.01alpha/beta hydrolase n=2 Tax=Streptomyces sparsoge... [more]
A0A7S3ZD40_9EUKA1.620e-2040.40Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A1Q7T7M5_9CHLR1.580e-1944.44Abhydrolase_3 domain-containing protein n=2 Tax=un... [more]
A0A365YR75_9ACTN3.310e-1946.15Esterase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A... [more]
K3ZIU4_SETIT5.670e-1939.47Abhydrolase_3 domain-containing protein n=2 Tax=Se... [more]
A0A0L8KU95_STRVR1.840e-1838.82Abhydrolase_3 domain-containing protein n=2 Tax=St... [more]
A0A7S1LUZ2_ALECA4.800e-1842.31Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A235G131_9NOCA5.450e-1837.84Acetyl esterase/lipase n=1 Tax=Rhodococcus sp. OK3... [more]
UPI000EF6C8217.890e-1845.63alpha/beta hydrolase n=2 Tax=Natronorubrum halophi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11568contigS-dermatodea_contig11568:7015..7503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.7
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog4555.Si026497m
EggNOG free text desc.alpha/beta hydrolase fold
EggNOG OGs37Z03@33090,3GPD2@35493,3I74K@38820,3KPXG@4447,COG0657@1,KOG1515@2759
COG Functional cat.V
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.5089686-CDS-S-dermatodea_contig11568:7014..75031622924208.5089686-CDS-S-dermatodea_contig11568:7014..7503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 7015..7503 +
1694079093.8376048-CDS-S-dermatodea_contig11568:7014..75031694079093.8376048-CDS-S-dermatodea_contig11568:7014..7503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11568 7015..7503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11568.1000.1prot_S-dermatodea_contig11568.1000.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11568 7015..7503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11568.1000.1

>prot_S-dermatodea_contig11568.1000.1 ID=prot_S-dermatodea_contig11568.1000.1|Name=mRNA_S-dermatodea_contig11568.1000.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
PQDTPRGSGVAGPFPCLLNHHGGGFAVWSPDVPFYDGFSVRLCARERVVV
VSVDYRLSSEEPFPAGLNDCMSALEWACVGGDGALDTTAPGEGVILFGDS
CGSNFVLALTLMAKRRGMLSAVKGVFAVSPFIAGEQCYPCDKLPSTVRSL
TGQGWAPTYPSVA
back to top

mRNA from alignment at S-dermatodea_contig11568:7015..7503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11568.1000.1 ID=mRNA_S-dermatodea_contig11568.1000.1|Name=mRNA_S-dermatodea_contig11568.1000.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=489bp|location=Sequence derived from alignment at S-dermatodea_contig11568:7015..7503+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACAAGACACCCCACGAGGTTCCGGAGTCGCCGGGCCGTTCCCGTGCTT ACTTAACCATCATGGAGGCGGCTTCGCGGTCTGGTCGCCCGATGTCCCGT TCTACGACGGCTTCTCGGTGCGTTTGTGCGCGCGGGAGCGCGTAGTGGTG GTGAGCGTGGACTACCGCCTGTCTTCCGAGGAGCCTTTTCCAGCCGGCCT GAATGACTGCATGAGCGCACTGGAATGGGCTTGCGTGGGCGGGGACGGTG CGCTGGATACTACCGCTCCCGGCGAAGGTGTGATCCTGTTCGGCGACAGC TGCGGGAGTAACTTCGTGCTGGCGCTGACGCTCATGGCCAAGAGACGTGG CATGCTGTCCGCGGTGAAGGGCGTCTTTGCGGTATCTCCGTTCATCGCCG GGGAGCAGTGTTACCCTTGCGACAAGCTTCCGAGCACGGTGAGGAGTCTG ACGGGCCAAGGGTGGGCTCCGACGTATCCGTCAGTGGCA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11568:7015..7503+

>mRNA_S-dermatodea_contig11568.1000.1 ID=mRNA_S-dermatodea_contig11568.1000.1|Name=mRNA_S-dermatodea_contig11568.1000.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig11568:7015..7503+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACAAGACACCCCACGAGGTTCCGGAGTCGCCGGGCCGTTCCCGTGCTT
ACTTAACCATCATGGAGGCGGCTTCGCGGTCTGGTCGCCCGATGTCCCGT
TCTACGACGGCTTCTCGGTGCGTTTGTGCGCGCGGGAGCGCGTAGTGGTG
GTGAGCGTGGACTACCGCCTGTCTTCCGAGGAGCCTTTTCCAGCCGGCCT
GAATGACTGCATGAGCGCACTGGAATGGGCTTGCGTGGGCGGGGACGGTG
CGCTGGATACTACCGCTCCCGGCGAAGGTGTGATCCTGTTCGGCGACAGC
TGCGGGAGTAACTTCGTGCTGGCGCTGACGCTCATGGCCAAGAGACGTGG
CATGCTGTCCGCGGTGAAGGGCGTCTTTGCGGTATCTCCGTTCATCGCCG
GGGAGCAGTGTTACCCTTGCGACAAGCTTCCGAGCACGGTGAGGAGTCTG
ACGGGCCAAGGGTGGGCTCCGACGTATCCGTCAGTGGCACCACAAGACAC
CCCACGAGGTTCCGGAGTCGCCGGGCCGTTCCCGTGCTTACTTAACCATC
ATGGAGGCGGCTTCGCGGTCTGGTCGCCCGATGTCCCGTTCTACGACGGC
TTCTCGGTGCGTTTGTGCGCGCGGGAGCGCGTAGTGGTGGTGAGCGTGGA
CTACCGCCTGTCTTCCGAGGAGCCTTTTCCAGCCGGCCTGAATGACTGCA
TGAGCGCACTGGAATGGGCTTGCGTGGGCGGGGACGGTGCGCTGGATACT
ACCGCTCCCGGCGAAGGTGTGATCCTGTTCGGCGACAGCTGCGGGAGTAA
CTTCGTGCTGGCGCTGACGCTCATGGCCAAGAGACGTGGCATGCTGTCCG
CGGTGAAGGGCGTCTTTGCGGTATCTCCGTTCATCGCCGGGGAGCAGTGT
TACCCTTGCGACAAGCTTCCGAGCACGGTGAGGAGTCTGACGGGCCAAGG
GTGGGCTCCGACGTATCCGTCAGTGGCA
back to top