mRNA_S-dermatodea_contig11555.994.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11555.994.1
Unique NamemRNA_S-dermatodea_contig11555.994.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A6H5L6F7_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6F7_9PHAE)

HSP 1 Score: 435 bits (1119), Expect = 1.330e-142
Identity = 215/236 (91.10%), Postives = 223/236 (94.49%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMMGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTSDDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            SSGG+LKCE RLEI++L+FFQVFRRMYMWEQHGMSAAAALTGIMMGSGMPKQDYAPTLKQKVFARFF+HIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFL+ASANVRQRTTFHLTLARLIFTTSDDMV MFE FMEPLLNVLRQL  A TFRQE+VKHALIGVCRDLRGVTAATNNRRSYGMLFD   P    +F
Sbjct:  552 SSGGRLKCEPRLEIAILFFFQVFRRMYMWEQHGMSAAAALTGIMMGSGMPKQDYAPTLKQKVFARFFDHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLSASANVRQRTTFHLTLARLIFTTSDDMVAMFETFMEPLLNVLRQLAVAPTFRQESVKHALIGVCRDLRGVTAATNNRRSYGMLFDALYPAHFGVF 787
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A835YUW2_9STRA (RAN binding protein 16-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW2_9STRA)

HSP 1 Score: 312 bits (800), Expect = 7.050e-96
Identity = 152/237 (64.14%), Postives = 187/237 (78.90%), Query Frame = 1 
Query:    4 SGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMMGSGMP-KQDY-APTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTSDDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            +GGQ KC  RLE++LLYFFQ FRRMYMWEQHG+ A   LT IMM   +P + D+ AP+ KQKVF  FF+H+G+GDHA + N+IVTK+GNNLKYWP + EV+S TLQLFLDMAS YSSSK+LL LDTV FL+++H EE FPFLA  +N R RTTFH+TL+RLIF  ++D   +FEAFM PLL VL QL AA +FRQET+K A+IG+CRDLRGV+AATNN+R+YGMLF+   P    +F
Sbjct:  557 TGGQGKCSPRLELALLYFFQTFRRMYMWEQHGLGAVT-LTTIMMSGALPARPDFTAPSNKQKVFQCFFDHMGLGDHAVVTNIIVTKVGNNLKYWPQNEEVISSTLQLFLDMASSYSSSKLLLSLDTVAFLIQHHNEEHFPFLAVPSNTRHRTTFHMTLSRLIFAATEDTDALFEAFMAPLLAVLAQLAAAPSFRQETIKRAIIGICRDLRGVSAATNNKRTYGMLFEALYPAHFPVF 792
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A7S1UQS7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQS7_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.880e-74
Identity = 131/246 (53.25%), Postives = 169/246 (68.70%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYM--WEQHGMSAAAALTGI---MMGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS--DDMVPMFEAFMEPLLNVLRQLGAA--ATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLFT 711
            SSGG  +   RLE +LLY+FQ FRR+YM  W+Q   S + + +G    ++G    K D AP+ KQKV+ R FEH+ MGDH+ + N+IVTK+GNNLK+WPD+H++V KTL+L  DMA GYSSSK+LL L+TV+FL R+HTE+ FPFLA   N R RTTFH TL RL+ +    D +   FE FMEPLLN + QLG       R E  +  LIGV RDLRGV A+ +NRR+YGMLFD+  P  L+L +
Sbjct:  148 SSGGVGRASPRLEQALLYYFQNFRRVYMFMWDQVSGSTSGSSSGTTVSVVGMMAAKLDSAPSTKQKVYQRMFEHLAMGDHSTVANLIVTKMGNNLKFWPDEHDIVGKTLELLHDMAGGYSSSKLLLTLETVRFLARHHTEDHFPFLAVPDNTRHRTTFHATLTRLLLSPGGEDKLGLTFEQFMEPLLNTMGQLGQLNPTDLRSENCRQPLIGVFRDLRGVAASLHNRRTYGMLFDLLYPRHLTLLS 393
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: D0P208_PHYIT (Exportin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P208_PHYIT)

HSP 1 Score: 237 bits (604), Expect = 4.470e-70
Identity = 122/245 (49.80%), Postives = 162/245 (66.12%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMM----GSG----MPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS-DDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            +SGGQ K     E+SLLY+F  FR+ Y+ EQHGM +A   +  M     GS     M   + A + K K + R FE +G+GDH  ++N++VTK+GNNLK+W     ++SKTL LF ++ASGYSS K+LLGL+TV++L+ NHT E FPFLA  AN R RTTFH T+ARLIFTT+ D+    FE FMEP+ NVL QL     +R   V+ A+IGVCRDLRG+   T+NRR+Y  +FD+  P    +F
Sbjct:  428 ASGGQTKPSVHFELSLLYYFSSFRKSYIGEQHGMPSAPTPSSSMQPASAGSASSPIMAPSESAMSSKHKAYLRMFERLGLGDHTVVVNMMVTKVGNNLKFWGGTEVIISKTLVLFFEVASGYSSGKLLLGLETVQYLIGNHTAEEFPFLAVPANTRHRTTFHSTIARLIFTTAFDESSERFERFMEPIENVLNQLLQTPNYRVPEVREAVIGVCRDLRGIIQQTHNRRTYSCIFDLLYPAYFPVF 672
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A7S2URD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URD2_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.780e-70
Identity = 122/243 (50.21%), Postives = 168/243 (69.14%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYM--WEQHGMSAAAALTGIMMGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTSDD--MVPMFEAFMEPLLNVLRQLGAAAT--FRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLFT 711
            SS G  + + +LE+++L++FQ FRR+YM  W+Q   S     + + M +   K D  P+ KQKV+ R FEH+GMGDH A+ N+IVTKIGNNLKYWP++ E+V+KTL+L LDMA GYSSSK+LL L+TV+FL R+HTE+ FPFL+   N R RTTFH  LARL+ + S +  +    E F++P+LN +  L + +    R E  +  LIGV RDLRG+ A+ +NRR+YGMLFDV  P  + LF+
Sbjct:  137 SSNGAGRSDPKLELAILFYFQNFRRVYMFMWDQVSGSGTVGTSVVSMMAS--KLDSTPSTKQKVYQRMFEHLGMGDHTAVANLIVTKIGNNLKYWPEEQEIVAKTLELLLDMAGGYSSSKLLLTLETVRFLARHHTEDHFPFLSNPQNSRHRTTFHAILARLLLSPSGEEKLGLTLEQFVDPILNTMGHLESFSPTDLRNEAARRPLIGVFRDLRGIAASLHNRRTYGMLFDVMQPQHMPLFS 377
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: H3GGA7_PHYRM (Importin N-terminal domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GGA7_PHYRM)

HSP 1 Score: 238 bits (608), Expect = 7.080e-69
Identity = 122/245 (49.80%), Postives = 162/245 (66.12%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAA--------ALTGIMMGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS-DDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            +SGGQ K     E+SLLY+F  FR+ Y+ EQHGM +A         A TG      M   + A + K K + R FE +G+GDH  ++N++VTK+GNNLK+W +   V+SKTL LF ++ASGYSS K+LLGL+TV++L+ NHT E FPFLA  AN R RTTFH T+ARLIFTT+ D+    FE FMEP+ NVL QL    ++R    + A+IGVCRDLRG+   T+NRR+Y  +FD+  P    +F
Sbjct:  557 ASGGQTKPSVHFELSLLYYFSSFRKNYIGEQHGMPSAPTPVSSMQPASTGSASSPIMAPSESAMSSKHKAYLRMFERLGLGDHTVVVNMMVTKVGNNLKFWGETEVVISKTLALFFEVASGYSSGKLLLGLETVQYLIGNHTAEEFPFLAIPANTRHRTTFHSTIARLIFTTAFDESSERFERFMEPVENVLNQLLQTPSYRVPEAREAVIGVCRDLRGIVQQTHNRRTYSCIFDLLYPAYFPVF 801
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BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A662YJ06_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ06_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.000e-68
Identity = 123/246 (50.00%), Postives = 164/246 (66.67%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMM-----GSG----MPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS-DDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            +SGGQ K     E+SLLY+F  FR+ Y+ EQHGM +A   +  M      GS     M   D A + K K + R FE +G+GDH  ++N++VTK+GNNLK+W ++  V+SKTL LF ++ASGYSS K+LLGL+TV++L+ +HT E FPFLA  AN R RTTFH T+ARLIFTT+ D+    FE FMEP+ NVL QL     FR   V+ A+IGVCRDLRG+   T+NRR++  +FD+  P    +F
Sbjct:  562 ASGGQQKPSVHFELSLLYYFSSFRKSYIGEQHGMPSAPTPSSSMQPVSSAGSSSSPIMAPSDGAMSSKHKAYLRMFERLGLGDHTVVVNMMVTKVGNNLKFWGENEVVISKTLALFFEVASGYSSGKLLLGLETVQYLIGHHTAEEFPFLAIPANTRHRTTFHTTIARLIFTTAFDESSERFERFMEPIENVLNQLLQTPNFRVPEVREAVIGVCRDLRGIVQQTHNRRTFSCIFDLLYPAYFPVF 807
[Close]
BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A7S3XL54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL54_HETAK)

HSP 1 Score: 226 bits (577), Expect = 7.100e-68
Identity = 110/201 (54.73%), Postives = 148/201 (73.63%), Query Frame = 1 
Query:  112 AALTGIM-MGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTSDDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLFT 711
            A L G++  G G+   +Y P+LK ++F R FEH+GMGDHAA++ ++ TKIGNNLKYWPD  E+V +TL LFLDMASGY++ K+LLGL+ V+ L+ +HT E FPFL   AN+R RTTFH TL RL++   D++   F+ FMEPLL ++ QL A    RQE+VK A+ G+CRDLRG+TAATNNRR+Y +LF++  P    +FT
Sbjct:    8 APLLGMVGAGGGL---EYQPSLKAEIFQRMFEHLGMGDHAAVVAIVATKIGNNLKYWPDSEEIVGRTLALFLDMASGYAT-KLLLGLEPVQVLLAHHTAEHFPFLQLEANMRHRTTFHATLTRLLYGNLDELEDGFDRFMEPLLALMAQLNATPDLRQESVKMAISGLCRDLRGITAATNNRRTYSILFEMLYPTYFPIFT 204
[Close]
BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A6U5EJC1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EJC1_9STRA)

HSP 1 Score: 235 bits (600), Expect = 8.710e-68
Identity = 118/243 (48.56%), Postives = 167/243 (68.72%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYM--WEQ-HGMSAAAALTGIMMGSGMPKQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS-DDMVPMFEAFMEPLLNVLRQLGA--AATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLFT 711
            S+GGQ KC  +LE+++L++FQ FRR+YM  W+Q  G  + +     ++G G  K D     KQKV+ R FEH+GMGDH  + N+I+TK+ NNLK+WP++ ++VSKTL+LFL+MASGYSSSK+LL L+T+ +LM +H+ E FPFL    N R RTT++  L RL+ T+  ++ +  F+ F+EP+  VL QL +  AA  R   VK  LIGV RDLRGVT++ +NR++YG LFD+  P     FT
Sbjct:  554 STGGQAKCSQKLELAILFYFQSFRRVYMFMWDQVTGSDSISEAVVTVVGMGTLKLDSGLNTKQKVYERMFEHMGMGDHTTVANLIITKVANNLKFWPNEEDIVSKTLELFLEMASGYSSSKLLLTLETIHYLMSHHSAEHFPFLTIHKNARHRTTYYTILTRLMLTSGGEEKLGTFQKFVEPICTVLSQLSSLDAAGLRTAQVKKLLIGVLRDLRGVTSSLHNRKTYGTLFDILYPAYFPFFT 796
[Close]
BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Match: A0A484EDS8_BRELC (Importin N-terminal domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDS8_BRELC)

HSP 1 Score: 235 bits (599), Expect = 1.240e-67
Identity = 119/245 (48.57%), Postives = 162/245 (66.12%), Query Frame = 1 
Query:    1 SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMM---GSGMPKQDYAPTL-----KQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVVSKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQRTTFHLTLARLIFTTS-DDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHALIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLF 708
            +SGGQ K     E++LLY+F  FR+ Y+ EQHGM +A   + +M     SG      AP++     K K + R FE +G+GDH  ++N+++TK+GNNLK+W     V+ KTL LF ++ASGYSS K+LLGL+TV++L+ +HT   FPFLA  AN R RTTFH T+ARL+FTT+ D+    FE FMEP+ NVL QL    T+R   V+ A+IGVCRDLRG+   T+NRR+Y  +FDV  P    +F
Sbjct:  557 ASGGQTKPSVHFELALLYYFSSFRKSYIGEQHGMPSAPTPSSLMQPVSASGPSSPLLAPSVSVISFKHKTYVRMFERLGLGDHTVVVNMMITKVGNNLKFWGHVEVVIHKTLALFFEVASGYSSGKLLLGLETVQYLIGHHTSSEFPFLAVPANTRHRTTFHSTIARLLFTTAFDESSERFERFMEPIENVLNQLLQTPTYRLPEVREAIIGVCRDLRGIVQQTHNRRTYSCMFDVLYPAYFPVF 801
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11555.994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F7_9PHAE1.330e-14291.10Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YUW2_9STRA7.050e-9664.14RAN binding protein 16-like protein n=1 Tax=Tribon... [more]
A0A7S1UQS7_9STRA1.880e-7453.25Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
D0P208_PHYIT4.470e-7049.80Exportin-like protein n=1 Tax=Phytophthora infesta... [more]
A0A7S2URD2_9STRA4.780e-7050.21Hypothetical protein n=1 Tax=Attheya septentrional... [more]
H3GGA7_PHYRM7.080e-6949.80Importin N-terminal domain-containing protein n=22... [more]
A0A662YJ06_9STRA1.000e-6850.00Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S3XL54_HETAK7.100e-6854.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U5EJC1_9STRA8.710e-6848.56Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A484EDS8_BRELC1.240e-6748.57Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11555contigS-dermatodea_contig11555:1320..7248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score438.7
Seed ortholog evalue1.7e-120
Seed eggNOG ortholog2880.D7G3N6
Preferred nameXPO7
KEGG koko:K18460
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0031267,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051020,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRAN binding protein 16-like, protein transporter
Ec32 orthologEc-00_006640.1
Exons5
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11555.994.1prot_S-dermatodea_contig11555.994.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11555 1320..7248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.0516968-CDS-S-dermatodea_contig11555:1319..13821622924208.0516968-CDS-S-dermatodea_contig11555:1319..1382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 1320..1382 +
1694079093.5157936-CDS-S-dermatodea_contig11555:1319..13821694079093.5157936-CDS-S-dermatodea_contig11555:1319..1382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 1320..1382 +
1622924208.0652094-CDS-S-dermatodea_contig11555:2152..23441622924208.0652094-CDS-S-dermatodea_contig11555:2152..2344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 2153..2344 +
1694079093.5282798-CDS-S-dermatodea_contig11555:2152..23441694079093.5282798-CDS-S-dermatodea_contig11555:2152..2344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 2153..2344 +
1622924208.0733566-CDS-S-dermatodea_contig11555:4752..49201622924208.0733566-CDS-S-dermatodea_contig11555:4752..4920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 4753..4920 +
1694079093.5370414-CDS-S-dermatodea_contig11555:4752..49201694079093.5370414-CDS-S-dermatodea_contig11555:4752..4920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 4753..4920 +
1622924208.0853372-CDS-S-dermatodea_contig11555:6044..62031622924208.0853372-CDS-S-dermatodea_contig11555:6044..6203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 6045..6203 +
1694079093.546169-CDS-S-dermatodea_contig11555:6044..62031694079093.546169-CDS-S-dermatodea_contig11555:6044..6203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 6045..6203 +
1622924208.096749-CDS-S-dermatodea_contig11555:7116..72481622924208.096749-CDS-S-dermatodea_contig11555:7116..7248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 7117..7248 +
1694079093.554595-CDS-S-dermatodea_contig11555:7116..72481694079093.554595-CDS-S-dermatodea_contig11555:7116..7248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11555 7117..7248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11555.994.1

>prot_S-dermatodea_contig11555.994.1 ID=prot_S-dermatodea_contig11555.994.1|Name=mRNA_S-dermatodea_contig11555.994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
SSGGQLKCESRLEISLLYFFQVFRRMYMWEQHGMSAAAALTGIMMGSGMP
KQDYAPTLKQKVFARFFEHIGMGDHAAIINVIVTKIGNNLKYWPDDHEVV
SKTLQLFLDMASGYSSSKMLLGLDTVKFLMRNHTEEFFPFLAASANVRQR
TTFHLTLARLIFTTSDDMVPMFEAFMEPLLNVLRQLGAAATFRQETVKHA
LIGVCRDLRGVTAATNNRRSYGMLFDVSLPLELSLFT*
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mRNA from alignment at S-dermatodea_contig11555:1320..7248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11555.994.1 ID=mRNA_S-dermatodea_contig11555.994.1|Name=mRNA_S-dermatodea_contig11555.994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5929bp|location=Sequence derived from alignment at S-dermatodea_contig11555:1320..7248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTCCGGGGGGCAGCTTAAGTGCGAGTCGCGCTTGGAGATCTCGCTTCT
CTATTTCTTCCAGGTGCGCTGTGTGGCGGAGTGATGCAATAGTACGTGTT
TTTTTTACCGAAACAACCGTTTCGTTTGCTACCTGGGTTTGTGGGTTTGT
TTGGTTTTTGTTGTTTTTGTTTGTGTTTTTGTTTGTGTTTTTGTTTTGTT
AATTGTTTTTTCCCATTGTTTTCATTGTTTCGGTTTTTGTCCTTTTGTCC
TTTTTCGTTTTTTTTAGTTTAGATGAGTCACAAGCCTATCGAGAGTCACC
TATTAATATTAATAGGGTCGTGTGACAGAAGGGTCCTTGACTTGGCTTAG
GACATGGTGGTTGTGATGAGCCCTTGCTGTGGGAGAGGGGGGGGGGGGGT
TCTTTAGCAGACCCAAGTCACGAGGTATGTCCCCGCTGATCCCGAGCGTT
TGTATTGATTATTTATTATGTCCTAGAGCTACTAATAGAGCTCTATATTA
TCCGACTACTTGTATTTGTAGGTGAAATCCGTTTTTTTTTTTGCCAATTT
CTTGGTATCTCACCTGACCACGAGAGCCGGAACGGGATCTCATCGTTTAC
CATTGGCCGGCCGGTCGGCTGTAAGTGTGACAATCAACCAATCAAAGGTC
AATTCTAAATCGCTACTAAAAAACATTCAAAGCGCTCTTATCATTTTTGA
ATTAACGAAGACACATTATGCACGTATATTAGTATAATAGCATATAGTCG
TATATTCACATGTAGCCGTTTCGTTTATCGCTGTCTCCCTCCTTCTGTGT
ATGATATATATGTCTCATCTTCCCAACCGGTAGGTGTTCCGCCGCATGTA
CATGTGGGAGCAGCACGGGATGTCCGCGGCGGCAGCGCTAACGGGGATAA
TGATGGGGAGCGGGATGCCTAAGCAGGACTACGCGCCGACGTTGAAACAG
AAAGTGTTCGCGAGGTTTTTCGAGCACATCGGGATGGGGGACCACGCGGC
GATCATCAACGTCATCGTCACGAAGGTGGGGGGGTGCGCGTGCGTATCTT
TGTCCTTATTAATTAATACAAGAGTCAACCCTTTTTTATAGGGTTTTTAG
AGAGTCCGAGTTTCCAAGTGAGACGTCCCATTTCAACTGAAGCCCAACGA
CCGCGGCGGCCGTGGTTGGCCGGAGTCGACCGCGGTCGGCCTCGGCCGCG
GTCGGCCACGGTCGACAGGCATATCGTTCTGCCAACGCACACACCTCACG
GGCGTAGCCGTGGCTATTAATACCTGCTAGTAGTTATTTAACAACAGCGC
TCAGAAATGTCGTTTTTTCCACACTATTTCCTATACGATTTGTAGACCGA
TTGTGTACACTATAAACTCTACTTACGATTTTGAGGCCAAACAACTTGAT
GTTTGTGTTGAGCGCCGAGTGTTGAAAACAGTAGGATGTTTCACCTCACG
GGCGTAATATACTGTAGTATAGCATACTAGCCTTGGCTATTACAGTAATA
CCTACTATCCTATAATAGTGTCATATTATCCAGCGGCCTTAACCCTATTG
GTACTAACCCCCTGTATGGAGCGCCGGTTAGCTCGTAATGAGGCGTGCGT
GAAGCGGGGCCCTGGGGAACCGTATGGGTTATGACGTAGGAATGAGGGAG
AACGGAGCCTAAGGGAAACGGGGGTGTGTAGCTGTCGGCTGGCATCGAGA
GAATTTTTGGTCATTTCGGATAGCCGTATTAATACTAATTTAGTAGTACG
AACGTAATATTAATAGTATCAAAAGGTTAACATGCCCGCGAAATCATGAC
AGCACCGAACCAGTACTACTGCTGTATGATACCGGCTGAAGATCACACAG
GCAGTGCCGCACAGGTCAATGCCGGTTTTAGTAAATATAAATATCACAAA
AGTATGATATTGATATTAATATTAATATTAATATTAATATTAATAGTGCC
GGCCCGAAAACCGGCACTGCTGTAAGATTATTATACGCATGCATGTCTTT
TCGCATGTCCTACACGGGAATCGGCACTGCTGTAAGATTAATATACGCAT
GTCTTTTCGCATGTGTCCCCTACATGGGAATCACACTCTAGACCTTTTGG
ATATCACACATGTATATCCAGGGCCGGCTACTACTGTAGAAGAGTGAAAA
TTTTGTCGGTGTCCGACCCAGTGCCGGTATATATATTACACTAGCACTGT
GAAAATACATGCGTAAGAAGTGCGCCGGGCATGTGAAGGGGACCCTGATA
TTAAAGCTTGTGGTATTGTGACCGGTTTTATGCCGAATATGTTGACTACA
GTATGGGTAATATCTTGGTGACGGGTGCATGGATATGTGCACCACCGTTA
GTGCATGCAAGCTGAGCGGGGCGGGGTTTCTATTTTATTAACAGTATTTG
TGAGTGACACGTTACTAGACTATGACGCATAATGTCACTAGACTAAAGAT
GAGACAGACGTCATATTAGTCTATGACGTGTCATGTCTCCGGACTATGAC
ACGTCACAACCTTTGGAGATAACTAGGCCTGCGTCCAGGGTCTGGGACCC
AATCTCAGGGGGTCGCGTGTCGCCCCCTGTCTCCCACAATATCCATCGAC
CTTGGGTGAACCTCGCGCTCGGCCCACACCCACGAGGTGTGACCCGTCCC
GAGACAAGCCCTATCGAGCCCGACTCGACTCCAGGGGGGTCACCCCGACA
TATTATATTAGTAGTATTGTGTTAAAAGTATTTTATTAATAGTATTACTA
GTAGGTATTAACAGCCACGGCTACGCCCGTGAGGTGTGCGTTGGCAGGAC
GATAATATGTACCTGGTACCAGTAAGTCGGCTTTGGAGGATACGGTGTGG
CGACCCACTGCAGGCGTAGGGCGCTGCTGGCTGCTGTGGGCCTCAAATCG
TATAGGAGTGTAGTGTGGGCTGGTCACTCTAAATCGCCATTAAAAAATGT
CCGAAGCGCTATTTATTAATTAATATAGTAATAGTACTGCTAGTGGGTAT
TAATAGCCACGGCTACTATTATACTATTGTAGCCCGTGAGGTGTGCGTTG
GTAGAGGACGATATGTGGGTTGGGAGGGCACGGTGGCGGTAGTACCCACG
GCAGGCGTTCGTTCACCCACGTAGGAGGAAGCCGAGCGTGCGGGGGCGGT
GACAAAAGCGTATTTTTGGAATTGGTGACGCTTGTTTAATGTTTATTGTT
TATTCCTTGTGTTGCCTACTGTAAGCATTTAGCAAGTTTTGGCATCAAGG
CTCCACTCTAAATTAAGATAAATAAAAAACGTGCAAAGCGCCATTAATCG
CCCTCGTGCGTTTGTATTGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCC
GTTCGTTCGTCATGTGCTGCTTGCTTGCTTGTTTTTGTTTTTGTTTTTGT
TTTTGTTTTTGTTTCGTGTTTTCTTCTTGGCAGATCGGGAACAACCTAAA
GTACTGGCCGGACGATCACGAGGTGGTGTCAAAGACTCTCCAGCTCTTCC
TCGATATGGCATCCGGGTACAGCTCGAGCAAGATGCTCCTGGGCCTGGAC
ACGGTCAAGTTCCTCATGCGCAACCACACCGAGGAGTTTTTCCCCTTTTT
GGTGCGTTTTTTTTTCTTGTTTTCTCGAAAACAGAAAGCGCCGGATCGCA
CACACACACATACACACACACACACACGCACACACTAAAGTGTATCTTCT
GTCTGCACGGACAAGACTTTAGACCCACAAGCTCTTGTACACTGTCTGCA
CCCTAACCCCCCACCGCCATCCACCTCACCCCCACGTATTGTGTAGACGA
GGTGTTGGCGAATCACGAAGTAGCCTTACATGTGTGAGATTGAGTATTAA
TATCATAGCGACAAGTGATGTCATGAGATAAAGCGTGTGACAATCTCAAA
TCTTTCAATAAGACGCCAGAGTCATGGCGAAGTTTTGTCCTCGGATTGAG
CTTGGGAACGTTTTTTTTTTTCAAGTGCACGTTGTGCTTTTATCTTTTAT
ATGCATGCCATGATATATTATATTATGTTATTGTATACTGTATGTGCCAT
GTGTGAAAGGAAGATGTGTTGTTTAGTTTTGGTTTTACCCCTTTGATTGG
ATTTCGCGTCTGACCTCGATAATGCCGGGTCGTGCTTACCGCCGATGGGC
CACATGTACGTGTGAGTGTGACAATCAATCATCAATCAATCAATTTATCG
ATGTTCGTTTCGCATGCACACATCAACAGTTGTGTTAACTGTTTGCTACT
ATTACTAACAATTTTGGGACTAAGCCTGTTTTCGGGTAACTGTTTGCTGT
TGTTTTTAATCATTTCGGGACTAAGCCTGTTTTTGGGTAACTGTTTGCTA
ATATTATTAATATTTTGGGACTAAGCCTGTTTTCGGGTAACTGTTTGCTA
TTGTTATTAATCCTTTTGGGACTAATCCTGTTGTCGGGTAACTGTTTGCT
ATTATTATTAATCCTTTTGGGACTAAGCCTGTTTTCGGGTAACTGTTTGC
TATTGTTATTAATCCTTTTGGGCCTAAGCCTGTTTTCGGGTAACTAACTG
TTTGCTGTTATCATTAACCCTTTTGGGACCGAGGTTGTTTTCGGGCTAAA
GCCATATGCCCGCACCTTATTTCACATCTGTGACCACACGATGAAATTGA
TCGACTAACCGATCCACCTAACTGACGTATTAATTATTTATCGATTGACG
GATTGATGGATCGATGTATCTGCAGGCGGCGTCGGCGAACGTGAGGCAAC
GGACGACTTTCCACCTAACCCTGGCGCGGCTGATCTTCACCACCTCGGAC
GATATGGTTCCGATGTTCGAGGCCTTTATGGAGCCTCTGCTGAACGTTCT
TCGACAGCTAGGGGCGGCTGCTACCTTCCGACAGGTGCGTTTGCTTTCAG
TATCATATTACGTTATATATGATATATAGTATAGGCTACTAGTAGGTAGC
CACGGCTTCGCCCGTGAGGTGTGCGTTCACAGGACGCTCAACTCTGAAAT
GAAGTTGTTTGGCGCCCAACACTAATGTTAACTTGTTTGGCATCACTTTT
TGGTGACACCAGAATCGTCTAAAATATGAAGGCATGTTGGCATGGTTACT
CTAAAATCGCTATTATATAAAAAAAACGTTCAAAGCGGTAATAAGTATAA
CAATAGTAGTAAGAAGATGCGGAATATAGGTAAGGGAATATAGAATATAG
GATAGGACACGAAAACGTGCATTGATAGGATTTATTATTCAAAAAGTTGG
TTGTTCTTTGCAGGACTTTCGAATTTATTTGATTTCATATTTTCCCCCGT
CCCGTAAAATGAAAGAAATAGATTTAAAAAAAAAACCACATCAATATGTA
CTCAAGGTATTTGCACCACCTACTACTGCTGTACCTATATCACAGCCAAT
TAATCCGACCCCAACTATAGTACCGTATTGTGGTTTATATGCGCAAAAGA
GTCAACGGTGAAGAGAAAATACACACCGCACCTCCTTCCGGCTCTAAAGT
TCCCACCCGAAAAGGACAAAATCCACAATTTTCCCATGTACAAGTATATA
AGTATTGCTTGCGACAAGTTCCGCACACCCGACTCGACGACTATTCATAG
CAGCAGCTGGTATCACCCTTGTGAAACAAACGCAGCCTGGCCGGCGAACC
GAACACCCGGCACATCGCTCCGTCCCGGCATTGTTGGGACGCGTGGTCTA
TTATGTTCGTCTGATACGACATACATGCGTTTAACATGCGTACACCCCTC
CCTCCCCCCCCCTCCCTTTCCGCTGTTTTTTTTTTTTTCATTTTTAGGAA
ACCGTGAAGCACGCCTTGATCGGGGTTTGCAGGGACTTGCGAGGCGTGAC
GGCGGCGACGAACAACCGTCGTTCCTACGGGATGCTGTTCGACGTAAGTC
TGCCGCTTGAGTTGTCACTATTTACATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11555:1320..7248+

>mRNA_S-dermatodea_contig11555.994.1 ID=mRNA_S-dermatodea_contig11555.994.1|Name=mRNA_S-dermatodea_contig11555.994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig11555:1320..7248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTCCGGGGGGCAGCTTAAGTGCGAGTCGCGCTTGGAGATCTCGCTTCT
CTATTTCTTCCAGAGCTCCGGGGGGCAGCTTAAGTGCGAGTCGCGCTTGG
AGATCTCGCTTCTCTATTTCTTCCAGGTGTTCCGCCGCATGTACATGTGG
GAGCAGCACGGGATGTCCGCGGCGGCAGCGCTAACGGGGATAATGATGGG
GAGCGGGATGCCTAAGCAGGACTACGCGCCGACGTTGAAACAGAAAGTGT
TCGCGAGGTTTTTCGAGCACATCGGGATGGGGGACCACGCGGCGATCATC
AACGTCATCGTCACGAAGGTGTTCCGCCGCATGTACATGTGGGAGCAGCA
CGGGATGTCCGCGGCGGCAGCGCTAACGGGGATAATGATGGGGAGCGGGA
TGCCTAAGCAGGACTACGCGCCGACGTTGAAACAGAAAGTGTTCGCGAGG
TTTTTCGAGCACATCGGGATGGGGGACCACGCGGCGATCATCAACGTCAT
CGTCACGAAGATCGGGAACAACCTAAAGTACTGGCCGGACGATCACGAGG
TGGTGTCAAAGACTCTCCAGCTCTTCCTCGATATGGCATCCGGGTACAGC
TCGAGCAAGATGCTCCTGGGCCTGGACACGGTCAAGTTCCTCATGCGCAA
CCACACCGAGGAGTTTTTCCCCTTTTTGATCGGGAACAACCTAAAGTACT
GGCCGGACGATCACGAGGTGGTGTCAAAGACTCTCCAGCTCTTCCTCGAT
ATGGCATCCGGGTACAGCTCGAGCAAGATGCTCCTGGGCCTGGACACGGT
CAAGTTCCTCATGCGCAACCACACCGAGGAGTTTTTCCCCTTTTTGGCGG
CGTCGGCGAACGTGAGGCAACGGACGACTTTCCACCTAACCCTGGCGCGG
CTGATCTTCACCACCTCGGACGATATGGTTCCGATGTTCGAGGCCTTTAT
GGAGCCTCTGCTGAACGTTCTTCGACAGCTAGGGGCGGCTGCTACCTTCC
GACAGGCGGCGTCGGCGAACGTGAGGCAACGGACGACTTTCCACCTAACC
CTGGCGCGGCTGATCTTCACCACCTCGGACGATATGGTTCCGATGTTCGA
GGCCTTTATGGAGCCTCTGCTGAACGTTCTTCGACAGCTAGGGGCGGCTG
CTACCTTCCGACAGGAAACCGTGAAGCACGCCTTGATCGGGGTTTGCAGG
GACTTGCGAGGCGTGACGGCGGCGACGAACAACCGTCGTTCCTACGGGAT
GCTGTTCGACGTAAGTCTGCCGCTTGAGTTGTCACTATTTACATAAGAAA
CCGTGAAGCACGCCTTGATCGGGGTTTGCAGGGACTTGCGAGGCGTGACG
GCGGCGACGAACAACCGTCGTTCCTACGGGATGCTGTTCGACGTAAGTCT
GCCGCTTGAGTTGTCACTATTTACATAA
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