mRNA_S-dermatodea_contig11550.993.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11550.993.1
Unique NamemRNA_S-dermatodea_contig11550.993.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11550.993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11550contigS-dermatodea_contig11550:1406..6294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size360
Cds size231
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11550.993.1prot_S-dermatodea_contig11550.993.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11550 2809..6294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.9874883-UTR-S-dermatodea_contig11550:1405..14531622924207.9874883-UTR-S-dermatodea_contig11550:1405..1453Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11550 1406..1453 -
1694079093.4605975-UTR-S-dermatodea_contig11550:1405..14531694079093.4605975-UTR-S-dermatodea_contig11550:1405..1453Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11550 1406..1453 -
1622924207.999003-UTR-S-dermatodea_contig11550:2728..28081622924207.999003-UTR-S-dermatodea_contig11550:2728..2808Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11550 2729..2808 -
1694079093.469803-UTR-S-dermatodea_contig11550:2728..28081694079093.469803-UTR-S-dermatodea_contig11550:2728..2808Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11550 2729..2808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.0074081-CDS-S-dermatodea_contig11550:2808..29721622924208.0074081-CDS-S-dermatodea_contig11550:2808..2972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11550 2809..2972 -
1694079093.4826913-CDS-S-dermatodea_contig11550:2808..29721694079093.4826913-CDS-S-dermatodea_contig11550:2808..2972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11550 2809..2972 -
1622924208.0181758-CDS-S-dermatodea_contig11550:6227..62941622924208.0181758-CDS-S-dermatodea_contig11550:6227..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11550 6228..6294 -
1694079093.4992676-CDS-S-dermatodea_contig11550:6227..62941694079093.4992676-CDS-S-dermatodea_contig11550:6227..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11550 6228..6294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11550.993.1

>prot_S-dermatodea_contig11550.993.1 ID=prot_S-dermatodea_contig11550.993.1|Name=mRNA_S-dermatodea_contig11550.993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=77bp
PPSLFYSHSTSSCLRTILYYRRSARPSHLLGQSPDVDCANSVCVLWILTF
IYKLKTSTRRSKNISSWDLFHSGRPS*
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mRNA from alignment at S-dermatodea_contig11550:1406..6294-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11550.993.1 ID=mRNA_S-dermatodea_contig11550.993.1|Name=mRNA_S-dermatodea_contig11550.993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4889bp|location=Sequence derived from alignment at S-dermatodea_contig11550:1406..6294- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCTTCCCTGTTCTACAGTCATTCCACCTCCTCGTGCCTACGAACTAT
TCTCTACTACAGAAGAAGTGAGTCCCACGGAGTGGGTAAAGCTAACCGTG
CAACGTTTTTGTCAAGCACCCCTGGTTGCTTCGGTTGCTCTTTGCGTTGT
AAGCTAATTATACACGTGTCATAATACTTGGACACGTAGAACGTGTGTAC
ACTATTCCTACTTAGTTACAACAGCAGTAAGTACGCGTGAGGTCTGATTT
TTCTTTGTCTGGCCCGCACGCATTATGGTTTCCTTGTCTGATTAGGGTGT
AACCCTTTTGAGAAACTTTAAGCCTGTTTTCGGGGGCACATGATCTGCTC
GCCGCGCCGTATTTCGCAGAGGACAGTGACCAAACCGCACCTGCTCTTCT
TCGCATACATATAATATGTATGTGTGTATCATGCATGGTGACTGGTGACG
GTGTAAAAGTGGCACCCTGTGTTTCACGCGTATTAGCTCGCATGCGCAAC
GCGGGGCAACGCGTCGGAACGGTGGACGCTTTTTAAGAGTCTCTGCCCCA
TCAAGCTGCGATGCCCCCAATACGCGTAGTTTTTAGCGATGATTTCGGCG
AAACTGTGGGCTGTAGTCTCCCAAATGGATAAACAGCAGTTAAACTGTTC
CAGTGGCGCGTGTTGGTAGGTTAGGTTTGGAGCGCTTCAACTCGGCTGTG
TACTTGCAGGCGATCCTAGAAACAGAGCTACTACTTATACTTGTACGCAG
GACATTATTCGTGTTGTCGCTTTTCGCGAGAGGTGTACGTGAACAATCAA
TTGACGAGTTTGAACTTTCGTGATATCTCATTGCCATCCCCCTTGTTTGC
GAAGTCTTGCCCTCTCTGCCTGGGTTTCAAGTTTTGCTATGGTTTCTGCT
ACGCTCATTGATTGGTTCCGATGACCAACTTCTACCGTCTGCATGCTGCA
CGCGCGAGCCATGACCGTGATCGCTGCCTGTGTCGAGACGCCTGCTGCCT
ACATAAAATGCGCTGTGGCTCCATATAAGGTCAAACGCTAGCTCTATTCT
TGTATATACCCGTACTCCTTGTCGGACAAACAAAAGGTGTACTTGTATGA
TCCTCATTATTTCTGCGGGGAAATTAGTTTGGGCGTGGCCGGATGGGAAC
AAAACAAAACACTGCAAAAGCCGGAACTGGGACACATTGCTTTGTCGGTG
GATATGACCATTTGTGATCTCCCCACAGGTATTGCGAGAGAAGAGTACTG
ACCTACAGAAAGAACGGGACACGCCTCTCTCGTGTACAGCAGCACAACAC
CTGCCTGTGAGGTTGGAATGTAAATGTATATGCAAGCAGGAGCGGGAAAA
TGTGGCAATTGCAGCTGGAACAAGCAACCCCGGATCAACACTACTACACT
CTGTACTGGACTATCGGGGGGGTTGTACTGCAGTTAAATAGTTGGGGAAA
ATAATTGATAGGCCTTGGATAGGCCTCAAGAAACAAAATATGTTACTAAA
CTACGAAATACGATCCAACCCGCCGTAGGTAGCAGCAATGGCGTCCTTCC
TGCCACCATGCACCCACAGGAGGAGCGTAGAGAGACCCACCCCTTCGAGG
GCACACGGCGCGTCCAAATCGAATTGCAGTCAACGGCCAGCGTTTTGCTT
GCTGTTGTCCGGTAGTATCATATTCGTATCGATCGGCTAGTCATTCCTAT
TCCGGGGGACCATAGTAAATAGGTCCAAATTTGCCACAAATCTCAACCTA
GAAATAAATATCAGAATAGGTTGGAATTATCGAGATTTCAAGGTCCACGT
TCTTGTATATGGCCATGATCTCGTTTTTTTCTTTTCATGAGGTTTTTGTT
GTTTGGATATCCATGTAATAGTTGGGTATTATATTAACGGTCATGGTCAT
GGTATTTGGTCCTGATTACTGTGTACCTCCGTAATCTTAGTTGTTAAGAA
GTAGCTGGCGCGGATTTTTCCAACGGACAAGACCTTAGCTACCAGGGATG
GATATAATTAGGGCCTGAAATCCGGCGGTACCGCCGATGATGAAAATGAT
CGGCGGCTTTTGCCACTCGGAGTGAAAATCCGTCGATTTTTGACGCGGCA
GGCGCCGAAACATAATGCAGCACCAGCACTCACGCTGCTCTCGAGATCAG
ACCCCCCCCCCCCCCCACCCTCTCCGCGCCCCCCTCCTTTGGTGGCGGCC
TCTCCAGCTCCCCGAGCATCACTCGCCCCAGGGCCTGTTCTATAAAACGC
GAACCAGCGCGCGCAAACGCGATAATATCATTTCGCACGATAGGATACCC
CAGCCGGCACTCTTATTAATAGTGACAAGCTTGCCATCTACAAGTACAAC
AGTTCGCATTTTATGGGGGAAAGGACGCTCTGTAAAAAAGCACCTGCAGC
ACGGGCCCATCGAGGCGCTGTCAAGCCGCCGGACCTTGAGCAGTGCAAAC
TTCCCAGGATGATGAAATAATTCACCAAACGCGGGGGGAGGAGACTCTTT
GCCAGTTCTTGTTGTCTGAACAACACAGCAGAACTCTTTGTGCCATCCAG
TACATAGCGGAGGCGTGCCGTGGTTTGCCTTTAGAGTCAAATTTCATCTT
GCGATCTGAGGAGTTACTTCCGCTTCCAAAGGAAAAAGCCGCATTGTTAA
TTCTTGGCGCACATTTGGCCACATCCCTATTGAACTTGCAACCCTATTGA
ACTTGCTACCCAGCATTATTTTCCAACGTCACCCCTTTTTGAATAATACC
CAGCATTATTTTCCAACGTCACCCCTTTTTGAATAATACCCAGCATTACT
TTCCAACGTCACCCCTTTTTGAATAATCTGGCGACACCCGGCCTAGCTCA
CCTCGTGCTTCAAGCTCGGCTTAGCACCACCACAAAGGCACTATATGACC
GAGCAGGTGGACCTTGCTTGATCCCTGACTAAATAAGTATATTTTATGTG
TCACAGCATATTATTATTACAAGTAGTCCTCCTGTACAGGGGGCCAGGCG
TTCCGGGCGGCGTGCGGGATATGTCTGGCATGTCTGGATATCACGCTTTT
TGTTCGGTGTAGGGGTGCTAGATCGCCACTTGCTCTAGTGCATCACGTGA
CGACGAGCGGGATCGCTAATAACGTTTTGCAATTAATTGAATTAACTGAT
AATGGCGGGCCGGTCGATCGTACGTGTGAAAATCAATTAAAAACTTGTTG
CTGTACAAGTATGCATCGTTTTTTGGGCTGTAAAGTACTGGTATTGACGA
CCATCTCCGCCCCCCCCCGCTTCGTGTGCAACGGTTCCTTGCTATCTTTA
CGACGCCCCGTACAAATAGTAGGTGCTCGCCCCAGTCATCTGCTGGGCCA
GTCACCAGACGTGGACTGCGCAAACTCGGTCTGTGTGCTTTGGATCCTGA
CATTTATCTATAAGTTGAAGACATCAACACGCCGAAGCAAGAACATATCA
TCATGGGACCTCTTTCACTCAGGACGTCCCTCGTGATTGCGGCCAACCTC
CTCTTCCTTGTATGCATCGCCTCGGGTCAAGGCGCAACCGAGTGCCCTCT
GGGCTCGACTGTGCAGGTGGTTCATATGAGCGTTTGGGCGCCAAGCGCAT
ATCTTACAAGCACCGAGTCACGGGGTGCTACAAAATAGAGAGTGGAATAG
GGCGAGAAGGATCAAAATAAGGTGTTTGATCTCACCAAGACGCTGCACCT
CCGACATGCTATGTGCGCCCAGGGCTCTCCCTTGTATTTCATAGGTTTCA
TATTGCGTCGTCGAGCCTAAAAATAGTCGTACGGCAGTCGTAAGTTTTAG
TTTTATTTAGCAACAAACGCTGGATTGGTCGGAGATATAGTGCGGGCTGG
CTGGTCCCAGTACACTATTAATATAAGAGAAACACTATCGATTGCTGTGA
CACGACTGTCTGTCGTAGTTTTGTGTATCCTTCAACGTAACGCGTATCCG
TCCCTTGTCATGATGCTTGCAAAGCGCGTACCAATAAGCCTTCCGCCCCC
CAAGCTGAAATCCTCTGCGGTAAGTTGTGTTTCGTTTGATTTATCGGTTG
TTTGGTACTTGGTTTGGGTGGTAGCAAAACGCGTCGGTCTCATGCGCTCG
TACGTAACGGCGAATTTGCCAGGTTTTCACGCGACAAGTACTGAAACGAT
TTTGGCAATTCTCTGCTTGAGACCCAATCATTTCGTTGTATCCTCATGAG
CGTAGTACGTACGCATACAAAAGGTGACGTTTTCAATTGCGTTACTATTA
TAGCAACGGAGAGTTGCCTGCGAAATTCAATACTTACAATTATTATATTT
CCCATCGAGGATCCAACCAGGCCGGACGTCAGAATAAAAATCACATGCGA
ACGCCGCCTTACATCAATTTCCAAACTCGCCCTAAGGTCAATCATATCGC
CCCAGGTTCACTGTGTAGTATATACTAGCACTAAGAAGACAAGACGTGTG
GCACTGCCAGGTCGTTCTTTGGCGTCTCGTTAACGTTTTCTCCCCCATTC
GCGCAGCGTTCAGATTCTACCACAAAATGTAAATCAATCCCAAAAAAAAC
TAACTTGACCTGACTTTCGAGCTTGTTCTCGCGAGTCATCATGTGGCTCG
TCCACCTCAAGTCATGATAGGCATGGCTACTGACTCTCTTCTTCTGACAG
GATGGGATATATCTCGACATTGTCCATAGTCCTGGGCAGGACAAATAAAT
GTATTGTTTCTACAAGTTTTTTAATAGTGGATCGGCTCATAATGACTCAC
CTGCCTGACTGGAACGAAGGCGCCATTGATATAATAGCCTTGCCTGTTAT
ATTCTCCTCGTTTCCGACGCAATCCGCACACCCCTCAACAGTGCGACGGC
GACGGCGAATGTGGAAGTGGCAGCTGCGACGGACTGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11550:1406..6294-

>mRNA_S-dermatodea_contig11550.993.1 ID=mRNA_S-dermatodea_contig11550.993.1|Name=mRNA_S-dermatodea_contig11550.993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig11550:1406..6294- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCTTCCCTGTTCTACAGTCATTCCACCTCCTCGTGCCTACGAACTAT
TCTCTACTACAGAAGAACCCCCTTCCCTGTTCTACAGTCATTCCACCTCC
TCGTGCCTACGAACTATTCTCTACTACAGAAGAAGTGCTCGCCCCAGTCA
TCTGCTGGGCCAGTCACCAGACGTGGACTGCGCAAACTCGGTCTGTGTGC
TTTGGATCCTGACATTTATCTATAAGTTGAAGACATCAACACGCCGAAGC
AAGAACATATCATCATGGGACCTCTTTCACTCAGGACGTCCCTCGTGAGT
GCTCGCCCCAGTCATCTGCTGGGCCAGTCACCAGACGTGGACTGCGCAAA
CTCGGTCTGTGTGCTTTGGATCCTGACATTTATCTATAAGTTGAAGACAT
CAACACGCCGAAGCAAGAACATATCATCATGGGACCTCTTTCACTCAGGA
CGTCCCTCGTGA
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