mRNA_S-dermatodea_contig11548.989.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11548.989.1
Unique NamemRNA_S-dermatodea_contig11548.989.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11548.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11548contigS-dermatodea_contig11548:6428..7243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11548.989.1prot_S-dermatodea_contig11548.989.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11548 6433..7243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.546338-UTR-S-dermatodea_contig11548:6427..64321622924207.546338-UTR-S-dermatodea_contig11548:6427..6432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11548 6428..6432 +
1694079093.1165092-UTR-S-dermatodea_contig11548:6427..64321694079093.1165092-UTR-S-dermatodea_contig11548:6427..6432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11548 6428..6432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.5597959-CDS-S-dermatodea_contig11548:6432..66061622924207.5597959-CDS-S-dermatodea_contig11548:6432..6606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11548 6433..6606 +
1694079093.127399-CDS-S-dermatodea_contig11548:6432..66061694079093.127399-CDS-S-dermatodea_contig11548:6432..6606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11548 6433..6606 +
1622924207.5692384-CDS-S-dermatodea_contig11548:7093..72431622924207.5692384-CDS-S-dermatodea_contig11548:7093..7243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11548 7094..7243 +
1694079093.1352608-CDS-S-dermatodea_contig11548:7093..72431694079093.1352608-CDS-S-dermatodea_contig11548:7093..7243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11548 7094..7243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11548.989.1

>prot_S-dermatodea_contig11548.989.1 ID=prot_S-dermatodea_contig11548.989.1|Name=mRNA_S-dermatodea_contig11548.989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MDAVWTALLEAMEAEMQALRDENEAASAAIHELEKVAFRELETTVEMMGE
EIAVREAKTQEKHRAEIARLDVESAALLEAKYADLQALRRTNAAASAALH
DASEREVG
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mRNA from alignment at S-dermatodea_contig11548:6428..7243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11548.989.1 ID=mRNA_S-dermatodea_contig11548.989.1|Name=mRNA_S-dermatodea_contig11548.989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig11548:6428..7243+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAATATGGACGCGGTATGGACGGCTCTGCTCGAAGCGATGGAAGCCGAG
ATGCAGGCGTTGCGTGACGAAAACGAGGCTGCATCTGCGGCCATCCACGA
GCTGGAGAAGGTGGCATTCCGCGAGCTGGAGACGACAGTGGAGATGATGG
GCGAAGAGATAGCTGTGCGAGAGGCCAAGGTGAGCGTTGCTGGGGGGGGC
GTGTTAGCACCAAGGGCGGGTGGGCATGAGCGTGGAGCAGACAGGACGTG
TCGCGGAGTGTTTTGCTTGATTTAGTATTTGTCCAATCGGGTGATGTATC
GGCGAGCGAGCCGAGGGAGTGCTGAGACCGATAGGCGGTTCAACCCCCAC
GGCGACTCACCTGGTAGAAAGAGTTTGGGGTGATCCCTTGACACAACGGA
CTCCAAGGGAACCCGCCCGGAAGAAACCGAGAGTAAAACAAACACTGTTG
CGAACACAAGTGAAAAACATAAACAAATGTTTGGGGGTCAGTCAGTATTG
GCGTTTCAAAAGCGCGATGGTTCGCCTTCGAAGCAAGCATCTCGCGCTCT
TGTGTTCGTTTTTGTTTTTAACGCTCTCCCTCCCCGCCTCCCCCACACCC
CCTCCACCCGTGTGCTATTATATTACTGCCACTTAACGGTTACCCCGGTG
CACCATTGTGCAACAGACGCAAGAAAAGCACCGGGCCGAGATCGCCCGAT
TGGACGTCGAAAGCGCCGCCCTCCTGGAAGCAAAATACGCCGACCTGCAA
GCGCTGCGCCGCACCAACGCGGCCGCGTCTGCGGCACTACACGACGCAAG
CGAGCGCGAAGTTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11548:6428..7243+

>mRNA_S-dermatodea_contig11548.989.1 ID=mRNA_S-dermatodea_contig11548.989.1|Name=mRNA_S-dermatodea_contig11548.989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig11548:6428..7243+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCGGTATGGACGGCTCTGCTCGAAGCGATGGAAGCCGAGATGCA
GGCGTTGCGTGACGAAAACGAGGCTGCATCTGCGGCCATCCACGAGCTGG
AGAAGGTGGCATTCCGCGAGCTGGAGACGACAGTGGAGATGATGGGCGAA
GAGATAGCTGTGCGAGAGGCCAAGATGGACGCGGTATGGACGGCTCTGCT
CGAAGCGATGGAAGCCGAGATGCAGGCGTTGCGTGACGAAAACGAGGCTG
CATCTGCGGCCATCCACGAGCTGGAGAAGGTGGCATTCCGCGAGCTGGAG
ACGACAGTGGAGATGATGGGCGAAGAGATAGCTGTGCGAGAGGCCAAGAC
GCAAGAAAAGCACCGGGCCGAGATCGCCCGATTGGACGTCGAAAGCGCCG
CCCTCCTGGAAGCAAAATACGCCGACCTGCAAGCGCTGCGCCGCACCAAC
GCGGCCGCGTCTGCGGCACTACACGACGCAAGCGAGCGCGAAGTTGGGAC
GCAAGAAAAGCACCGGGCCGAGATCGCCCGATTGGACGTCGAAAGCGCCG
CCCTCCTGGAAGCAAAATACGCCGACCTGCAAGCGCTGCGCCGCACCAAC
GCGGCCGCGTCTGCGGCACTACACGACGCAAGCGAGCGCGAAGTTGGG
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