mRNA_S-dermatodea_contig11536.988.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11536.988.1
Unique NamemRNA_S-dermatodea_contig11536.988.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11536.988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11536contigS-dermatodea_contig11536:4844..6127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.479876-CDS-S-dermatodea_contig11536:4845..51181622924207.479876-CDS-S-dermatodea_contig11536:4845..5118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11536 4846..5118 -
1694079093.100984-CDS-S-dermatodea_contig11536:4845..51181694079093.100984-CDS-S-dermatodea_contig11536:4845..5118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11536 4846..5118 -
1622924207.4935715-CDS-S-dermatodea_contig11536:6022..61271622924207.4935715-CDS-S-dermatodea_contig11536:6022..6127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11536 6023..6127 -
1694079093.1082048-CDS-S-dermatodea_contig11536:6022..61271694079093.1082048-CDS-S-dermatodea_contig11536:6022..6127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11536 6023..6127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11536.988.1prot_S-dermatodea_contig11536.988.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11536 4846..6127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11536.988.1

>prot_S-dermatodea_contig11536.988.1 ID=prot_S-dermatodea_contig11536.988.1|Name=mRNA_S-dermatodea_contig11536.988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
GGSRGLLRLLPGVKAKSRLTVTHGGGVYRGTSGVEIPIGDVMIENQSGAG
LLCGVEQFVRKAAGVGDSYTARTSRSRLVFGAGTFCTSHYTPAPPSLFDK
LRRGEARFSDAGDLQVVGRRGKVVWS
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mRNA from alignment at S-dermatodea_contig11536:4844..6127-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11536.988.1 ID=mRNA_S-dermatodea_contig11536.988.1|Name=mRNA_S-dermatodea_contig11536.988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig11536:4844..6127- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGGTCGCGGGGTCTCTTGCGGCTGCTTCCCGGTGTAAAGGCGAAATC
TCGATTGACGGTTACCCACGGTGGGGGCGTCTACCGCGGCACTAGCGGCG
TTGAGGTAACACCACGGAACGCTGCTGTAGCAATATTAATAGAAACATAG
CGTCTACATTAGTAGATTTACCTCGGTGTGTTTTTGTGTCGATTTGATGT
ACCCATGTTAAATTTTCCGCGTCTTGGTTGATTGCGGACTCCGACCTACT
CTACCTGGCTGGCCGACTGTGCGCTGAGGATGTGCCTGTGTTTTATATAA
CCTCTTTTGGGCTCGAGCATTCACAGCCTTCTCCACAAAAAACGCGAGTA
CGATCTTGGTGATTAACTTAGCGTTTACTTTTAAATTCTGTATTTCCACC
ATCCCCCACACGGAGCCCTTTCCGTGGCCCGATAAATTGTTGCCGAATCG
TTTCACCACGTGCAACAATACGCCCCGCTGGGTTCAGTTTTGCCGATATT
ACTTGGTGCGTTCACGTCATAACATGTGACTTGATTTTCGTGTGGGAACA
TCCCTAAATTCCATGTTATGTTTTCACCTCTCTTTCGGCCCAATGGCACT
TTGTGCTGCCTGCGGGTCGCGGACGAGGGTACAAAAAAAACGTCGAAAGT
AGATCCTCCGCGTTCCCTGTAGCAGGAAAATCACATTAGGTGATATATTT
GTAAGGCAGCCAGCTTGAGCATATTTTGTATCGTTTGCATGTAATTGCCC
GTCTTCAACGGCAACACTTCCTCCCATCTCACCCCGGCACACACATGTTC
GGATTTTCTCGTGTGTACCCCAACAATTCGGAAGCTCGACGATTTTTCGA
ACGCCACGTCGCTTCATCCGGCACTAGTAAAAAACACACGTAACACCTGC
ACACGTACTTATACACACAATAAACGACCACGCAAACATTTTAACCAATC
AGTCGTCCGGCGCGGCGTGCTCGCATCCCCACTCCCCTGTCCTCTTAACA
CTCACACAGATTCCCATCGGAGACGTGATGATCGAGAACCAGAGCGGGGC
AGGCCTGCTGTGCGGCGTCGAGCAATTCGTTCGCAAGGCAGCCGGCGTCG
GTGACTCCTACACTGCCAGGACCTCGCGATCACGGCTCGTATTCGGTGCG
GGCACTTTCTGCACCTCCCACTACACTCCGGCCCCGCCCTCACTGTTCGA
CAAGCTCCGCCGGGGAGAGGCGCGTTTCTCCGACGCCGGAGACCTACAGG
TTGTTGGCCGCCGAGGCAAGGTGGTGTGGTCTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11536:4844..6127-

>mRNA_S-dermatodea_contig11536.988.1 ID=mRNA_S-dermatodea_contig11536.988.1|Name=mRNA_S-dermatodea_contig11536.988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11536:4844..6127- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGGGTCGCGGGGTCTCTTGCGGCTGCTTCCCGGTGTAAAGGCGAAATC
TCGATTGACGGTTACCCACGGTGGGGGCGTCTACCGCGGCACTAGCGGCG
TTGAGGGAGGGTCGCGGGGTCTCTTGCGGCTGCTTCCCGGTGTAAAGGCG
AAATCTCGATTGACGGTTACCCACGGTGGGGGCGTCTACCGCGGCACTAG
CGGCGTTGAGATTCCCATCGGAGACGTGATGATCGAGAACCAGAGCGGGG
CAGGCCTGCTGTGCGGCGTCGAGCAATTCGTTCGCAAGGCAGCCGGCGTC
GGTGACTCCTACACTGCCAGGACCTCGCGATCACGGCTCGTATTCGGTGC
GGGCACTTTCTGCACCTCCCACTACACTCCGGCCCCGCCCTCACTGTTCG
ACAAGCTCCGCCGGGGAGAGGCGCGTTTCTCCGACGCCGGAGACCTACAG
GTTGTTGGCCGCCGAGGCAAGGTGGTGTGGTCTATTCCCATCGGAGACGT
GATGATCGAGAACCAGAGCGGGGCAGGCCTGCTGTGCGGCGTCGAGCAAT
TCGTTCGCAAGGCAGCCGGCGTCGGTGACTCCTACACTGCCAGGACCTCG
CGATCACGGCTCGTATTCGGTGCGGGCACTTTCTGCACCTCCCACTACAC
TCCGGCCCCGCCCTCACTGTTCGACAAGCTCCGCCGGGGAGAGGCGCGTT
TCTCCGACGCCGGAGACCTACAGGTTGTTGGCCGCCGAGGCAAGGTGGTG
TGGTCT
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