mRNA_S-dermatodea_contig11528.983.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11528.983.1
Unique NamemRNA_S-dermatodea_contig11528.983.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: D7G200_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G200_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 2.870e-132
Identity = 205/273 (75.09%), Postives = 227/273 (83.15%), Query Frame = 1 
Query:    1 YEGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXX-------SGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVA-LDVPLLATHFVKGEPRFTCVAGCLSVEACSPEP 795
            + GT+TCMEFYKSTHLLTGSEDH+VCIWRVHDWALLHVLGGHKAAV+SLSIHPSGRMALSVSRDRTLRLWNLLEGRCAY+KRLQGEGELV+WSP+GDSYLVVVG+TV VYSAATSE +GEC+HDARVNSACF GG          AVATC+DDK IRFF+TEGG+ LG++DVSDVCPTGR+RDMCHV A A XXXXXXX        GGSL  VTS G V+VWGVP+LEG V  EG+ A L VPLL+TH +KGEPRFTCV  CL  +   P P
Sbjct:  120 HNGTITCMEFYKSTHLLTGSEDHTVCIWRVHDWALLHVLGGHKAAVTSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYIKRLQGEGELVKWSPAGDSYLVVVGSTVSVYSAATSEAVGECRHDARVNSACFTGGKGGKGA---VAVATCADDKTIRFFRTEGGTLLGKVDVSDVCPTGRIRDMCHVGADAXXXXXXXXXXDRACSGGGSLATVTSTGGVHVWGVPTLEG-VGAEGSGAELTVPLLSTHSLKGEPRFTCVTACLCGDVTEPAP 388
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A836CGS2_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.020e-61
Identity = 127/286 (44.41%), Postives = 160/286 (55.94%), Query Frame = 1 
Query:    1 YEGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHV----------------------AASADXXXXXXXSG----GSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLSVEA 780
            + GTVTC+ F+ STHLL+GSED ++CIWRVHDWALLHVLGGHK AV+ LSIHPSGRMALSVS DRTLRLWNL+EGR AY+KRL G G++VRWSP G  + VVVG  +++Y AA SEP        ++N+  ++             VA  +DD  IR +   G   L +L     C  GRVRDM +                        A+A+        G    G LV VTS G V VW +  L+G        +    ++A   V GEPRFTC+  C +  A
Sbjct:   83 HSGTVTCLAFHDSTHLLSGSEDKTICIWRVHDWALLHVLGGHKGAVTDLSIHPSGRMALSVSTDRTLRLWNLVEGRAAYIKRLPGGGDMVRWSPQGTHFAVVVGKQLILYEAAASEPACTRSCPLKINAMAWLN---------DTTVAAAADDHVIRVYSATG-DVLAELPAEAACG-GRVRDMAYTPTLTLALGLGDSGGAAAHDPEETAAAEVAVGASALGTEQRGRLVTVTSTGTVQVWEL-KLDGG-------SCSATVVAHTRVLGEPRFTCLVACDTASA 349
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A7R9U2R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.350e-50
Identity = 104/296 (35.14%), Postives = 159/296 (53.72%), Query Frame = 1 
Query:    1 YEGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSL------------EGDVAGEGAVALDVPLLATHFVKGEPRFTCVAG-----CLSVEACSPEPQAAARGKKNSKKRK 837
            + G VTC+ F  STHLL+GS D ++CIWRVHDW  L +LG H   V  L++HPSGR+ALSV++DRT+RLW+L++GRCA+ +R++G  E V+W   G  Y +++G  V V++AA +  + + +H+ R N+  F+ G           + T  DD+ +RFF+   GS + QLD+S V P  R+RD+C     A             +  +S+G V VW V  +            E +   + A  L   L+  +    + R TCV         S  A +PEP +  + +K +  +K
Sbjct:   95 HNGAVTCLAFVGSTHLLSGSTDSTICIWRVHDWNCLQILGDHSGEVLDLAVHPSGRVALSVAKDRTIRLWDLIKGRCAFTRRVRGIAEQVQWDEEGSMYAILIGRDVQVHNAADNSVVCKLEHEKRTNAFKFLPGI--------GTILTAGDDRLLRFFRVSDGSLVRQLDLSTVFPF-RIRDLCLHENQA-------------ILASSSGSVQVWDVEKMLAGYSVAAQEGGEAEEKADRAPELSDCLVDAYEASDDARLTCVVADEWRDIPSEAADAPEPGSRRKRRKKATAKK 368
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A024GIW4_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GIW4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.050e-48
Identity = 93/255 (36.47%), Postives = 144/255 (56.47%), Query Frame = 1 
Query:    7 GTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLS 771
            G++TC+EF++ TH+L+ S D +VCIWRV DW  LH+LGGHK  ++S++IHPSG++A SV+RD+TLR+WNL+ GRCAY++RL+ E E+V+ S  G  YL+  G+ V ++S + +E +G  KH  RV++  F              V    +DK++  +  +G + L ++   D+    R  D+     S+D           +V  TS G V +W +  L+ D      +   V   AT  +   PR TC+  C S
Sbjct:   89 GSITCLEFFQQTHVLSASTDKTVCIWRVSDWNCLHILGGHKEEINSITIHPSGKLAFSVARDQTLRMWNLVNGRCAYIRRLEKEAEIVKISTLGKRYLLTFGSVVSIFSTSDAELVGTLKHPKRVHACVFA---------TDDLVVCAGEDKHLYVWNVDG-TLLAKVTHPDLTARIRCIDVIDQEVSSDLPI--------IVLATSNGTVQIWDLNDLQLDSDSPFELNESVQPSATTKILNAPRITCLTACAS 325
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: F0WFN4_9STRA (p21activated protein kinaseinteracting protein putat n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFN4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.020e-46
Identity = 94/265 (35.47%), Postives = 148/265 (55.85%), Query Frame = 1 
Query:    7 GTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPL--------LATHFVKGEPRFTCVAGCLSVE 777
            G++TC+EF++ THLL+ S D +VCIWRV DW  LHVLGGHK  +S+++IHPSG++A SV+RD+TLR+WNL+ GRCAY++RL+ E E+VR S  G  YL+  GN V ++  + +E +G   H  R+++  F              V    +D++I  +  +G + L ++  +D+    R  D+     S++          ++V  TS G V +W +  L+ D         + PL         AT  +   PR TC+  C+S++
Sbjct:   89 GSITCLEFFQHTHLLSASTDKTVCIWRVSDWNCLHVLGGHKEEISAIAIHPSGKLAFSVARDQTLRMWNLVNGRCAYIRRLEKEAEIVRISTLGKRYLLTFGNVVSIFCTSDAELIGTLTHPKRMHACVFA---------TDDLVVCAGEDRHIYVWNVDG-TLLAKVTHADLTARIRCIDVIIENESSELP--------TIVLATSNGTVQIWDLNDLQLD--------SEFPLESNEAAQPAATTMILNAPRITCLTACVSLQ 327
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A8K1FGB7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGB7_PYTOL)

HSP 1 Score: 172 bits (436), Expect = 1.370e-46
Identity = 94/272 (34.56%), Postives = 153/272 (56.25%), Query Frame = 1 
Query:    1 YEGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLSVEACSPEPQAAARGK 816
            ++G VTC+EF+  +H+L+GS D+S+CIWR  DW  LH+LGGHKA ++S+++HPSG++A SV+RDRTLR+WNL++GR AY++RL+ E   V  S SG  Y +  G+ V V+S+A +E +G  +H  +V++A F              V    +DK I  +K  G S + ++  +D+    R  ++ +   + +           +V  +S+G V VW +     D         DV  L +  +  +PR TC++ C+   A S +  A+ + K
Sbjct:   81 HKGAVTCLEFFGQSHMLSGSADNSICIWRTSDWNCLHILGGHKAEITSMAVHPSGKLAFSVARDRTLRMWNLVKGRIAYIRRLEKEASSVVMSQSGSRYALSFGSDVSVFSSANAEVVGMLEHSDKVHAAVFA---------TDEYVVCGGEDKCIYVWKATG-SLVAKVTHADIISRIRCMEVVYARGAEELPW--------IVVASSSGAVQVWDLADFTFDDESPEEANKDVTPLVSTTLLSKPRVTCLSACV---ASSDDKDASGKAK 331
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: K3X853_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X853_GLOUD)

HSP 1 Score: 169 bits (427), Expect = 3.170e-45
Identity = 92/257 (35.80%), Postives = 143/257 (55.64%), Query Frame = 1 
Query:    7 GTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLSVE 777
            G +T +EF+  +HLL+GS D+S+CIWR  DW  LH+LGGHK  ++S+++HPSG++  SV+RDRTLR+WNL++GR AY++RL+ E  LV  S  G  Y +  G  + V+S+A +E +G  +H  R+  A F              V    DDK I  +KT G S + ++   ++  T R+R M  +  + +           +V  TS G V +W + +L+ D          V  +A+  +  +PR TC+  CL+ E
Sbjct:   86 GAITSLEFFGQSHLLSGSADNSICIWRTSDWNCLHILGGHKGEINSIAVHPSGKLCFSVARDRTLRMWNLVKGRIAYIRRLEREANLVMLSQKGTRYALCFGTDLSVFSSANAELVGTLEHKQRIQCAVFATDDY---------VVCGGDDKYIYVWKTSG-SLVAKVTHPEI--TARIRCMQVLYVNGEDQLPW------IVIATSNGAVQIWDLATLKFDALAPEESNKSVVPVASTLLLSKPRLTCLTACLADE 324
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BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A2D4C1M6_PYTIN (p21-activated protein kinase-interacting protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1M6_PYTIN)

HSP 1 Score: 168 bits (426), Expect = 4.730e-45
Identity = 88/255 (34.51%), Postives = 142/255 (55.69%), Query Frame = 1 
Query:    4 EGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCL 768
            +G +TC+EF+  +H+L+G  DHS+CIWR  DW  LH+LGGHK  ++S+++HPSG++A SV+RDRTLR+WNL++GR A+++RL  E   V  S +G  Y +  GN + V+S+A +E +G   H  ++++A F              V    +DK I  +K   G+ + ++   ++  T R+R M  V    +           +V  TS+G V VW +   + D         DV  + +  +  +PR TC++ CL
Sbjct:   94 KGAITCLEFFGQSHMLSGCADHSICIWRTSDWNCLHILGGHKGEITSIAVHPSGKLAFSVARDRTLRMWNLVKGRIAFIRRLDKEASFVLMSQTGGRYALCFGNELSVFSSANAEVIGTLDHPQKIHAAVFATDDY---------VVCGGEDKTIYVWKA-AGTLVAKISHPEL--TSRIRCMQVVYPHGEDKLPW------IVVATSSGTVQVWDMADWKLDPLAPEEANADVSPVVSTTLLSKPRLTCLSACL 330
[Close]
BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A5D6YCQ0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCQ0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.890e-45
Identity = 88/257 (34.24%), Postives = 143/257 (55.64%), Query Frame = 1 
Query:    7 GTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADXXXXXXXSGGSLVAVTSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLSVE 777
            G +T +EF+  +HLL+GS DHS+CIWR  DW  LH+LGGHK  ++S+++HPSG++  SV+RDRTLR+WNL++GR AY++RL+ E  LV  S  G  Y +  G  + V+S+A +E +G  +H  RV  A F              V    DDK+I  ++  G + + ++  +D+  T R+R +  +  + +           +V  TS G V +W + +   D     A    V  + +  +  +PR TC++ C++ +
Sbjct:   90 GAITSLEFFGQSHLLSGSADHSICIWRTSDWNCLHILGGHKGEINSIAVHPSGKLCFSVARDRTLRMWNLVKGRIAYIRRLEKEANLVLLSQKGSRYALCFGADLSVFSSANAELVGALEHKQRVQCAAFATDDY---------VVCAGDDKHIYVWQATG-NLVAKVTHADI--TARIRCLQVLYVNGEDALPW------VVLATSNGTVQIWDLAAFTFDALAPAAANAGVAPVTSTTLLSKPRLTCLSACVATD 328
[Close]
BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Match: A0A7R9Y9Y4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.990e-43
Identity = 71/162 (43.83%), Postives = 107/162 (66.05%), Query Frame = 1 
Query:    1 YEGTVTCMEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRMALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTVVVYSAATSEPLGECKHDARVNSACFVGGXXXXXXXXXAAVATCSDDKNIRFFKTE 486
            + G VTC+ F  STHLL+GS D ++CIWRVHDW  L +LG H   V  L++HPSGR+ALSV++DRT+RLW+L++GRCA+ +R++G  E V+W   G  Y +++G  V V++AA +  + + +H+ R N+  F+ G           + T  DD+ +RFF+ E
Sbjct:   95 HNGAVTCLAFVGSTHLLSGSTDSTICIWRVHDWNCLQILGDHSGEVLDLAVHPSGRVALSVAKDRTIRLWDLIKGRCAFTRRVRGIAEQVQWDEEGSMYAILIGRDVQVHNAADNSVVCKLEHEKRTNAFKFLPGI--------GTILTAGDDRLLRFFRCE 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11528.983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G200_ECTSI2.870e-13275.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGS2_9STRA1.020e-6144.41WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7R9U2R5_9STRA1.350e-5035.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A024GIW4_9STRA3.050e-4836.47Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
F0WFN4_9STRA1.020e-4635.47p21activated protein kinaseinteracting protein put... [more]
A0A8K1FGB7_PYTOL1.370e-4634.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X853_GLOUD3.170e-4535.80Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4C1M6_PYTIN4.730e-4534.51p21-activated protein kinase-interacting protein, ... [more]
A0A5D6YCQ0_9STRA9.890e-4534.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7R9Y9Y4_9STRA5.990e-4343.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11528contigS-dermatodea_contig11528:1561..7269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.1
Seed ortholog evalue8.6e-105
Seed eggNOG ortholog2880.D7G200
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-07_003530.1
Exons5
Model size1062
Cds size1041
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11528.983.1prot_S-dermatodea_contig11528.983.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11528 1561..7248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.1121721-CDS-S-dermatodea_contig11528:1560..18901622924207.1121721-CDS-S-dermatodea_contig11528:1560..1890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 1561..1890 -
1694079092.828159-CDS-S-dermatodea_contig11528:1560..18901694079092.828159-CDS-S-dermatodea_contig11528:1560..1890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 1561..1890 -
1622924207.1226463-CDS-S-dermatodea_contig11528:4029..42601622924207.1226463-CDS-S-dermatodea_contig11528:4029..4260Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 4030..4260 -
1694079092.8450463-CDS-S-dermatodea_contig11528:4029..42601694079092.8450463-CDS-S-dermatodea_contig11528:4029..4260Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 4030..4260 -
1622924207.133975-CDS-S-dermatodea_contig11528:4517..47251622924207.133975-CDS-S-dermatodea_contig11528:4517..4725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 4518..4725 -
1694079092.8623424-CDS-S-dermatodea_contig11528:4517..47251694079092.8623424-CDS-S-dermatodea_contig11528:4517..4725Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 4518..4725 -
1622924207.1450615-CDS-S-dermatodea_contig11528:6501..66451622924207.1450615-CDS-S-dermatodea_contig11528:6501..6645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 6502..6645 -
1694079092.8711748-CDS-S-dermatodea_contig11528:6501..66451694079092.8711748-CDS-S-dermatodea_contig11528:6501..6645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 6502..6645 -
1622924207.152873-CDS-S-dermatodea_contig11528:7120..72481622924207.152873-CDS-S-dermatodea_contig11528:7120..7248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 7121..7248 -
1694079092.8789604-CDS-S-dermatodea_contig11528:7120..72481694079092.8789604-CDS-S-dermatodea_contig11528:7120..7248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11528 7121..7248 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.160917-UTR-S-dermatodea_contig11528:7248..72691622924207.160917-UTR-S-dermatodea_contig11528:7248..7269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11528 7249..7269 -
1694079092.8866599-UTR-S-dermatodea_contig11528:7248..72691694079092.8866599-UTR-S-dermatodea_contig11528:7248..7269Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11528 7249..7269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11528.983.1

>prot_S-dermatodea_contig11528.983.1 ID=prot_S-dermatodea_contig11528.983.1|Name=mRNA_S-dermatodea_contig11528.983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=347bp
MEFYKSTHLLTGSEDHSVCIWRVHDWALLHVLGGHKAAVSSLSIHPSGRM
ALSVSRDRTLRLWNLLEGRCAYVKRLQGEGELVRWSPSGDSYLVVVGNTV
VVYSAATSEPLGECKHDARVNSACFVGGGGGSEGGAGAAVATCSDDKNIR
FFKTEGGSSLGQLDVSDVCPTGRVRDMCHVAASADGDGDGVGSGGSLVAV
TSAGVVNVWGVPSLEGDVAGEGAVALDVPLLATHFVKGEPRFTCVAGCLS
VEACSPEPQAAARGKKNSKKRKQLHQHRSQRQGALEGGETAGGGDGGGDR
EHAGGVPDTAAGSGKKKKSKRKKAREGLQSAGGGGGGGGGGRKGAAG
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mRNA from alignment at S-dermatodea_contig11528:1561..7269-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11528.983.1 ID=mRNA_S-dermatodea_contig11528.983.1|Name=mRNA_S-dermatodea_contig11528.983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5709bp|location=Sequence derived from alignment at S-dermatodea_contig11528:1561..7269- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGAAGGTACGGTAACGTGCATGGAGTTCTACAAGTCCACGCACCTCCT
CACGGGCAGCGAGGACCACAGCGTCTGCATCTGGCGCGTGCACGACTGGG
CCCTTCTCCACGTGCTGGGGGGGCACAAGGCAGCGGTTTCATCTCTGAGG
TGAAGGCGGCGGCTTGCTGTCGGGCTCTGGGATCCTTTTTGCCTGTTTTT
TTGTATGGAAATAGAGGTCTGTTTGCTGTTTTTTTTTAAGGACTCTAGGC
ATGACGGCCACCTTCTTTTGTTGCTCGGTTTTTGACGCACAACGCGTGCG
TTTTGGGATGGACGCTCTACTCAACCCAACCCCAACCCTAACCCAACCCT
AATCCTAACTCTAACCCTACCCCTAACCCTAGAGCCACTCTTGTTATCTA
TCCGAGGCCCACAGCGGTTACTGGCGGTTGCATCTCTTGAGGTAAAGACA
TTGGGTTGCTGTTGGGCCCTCGTATCTTTTTGCCTGATTTGGCGTACGAA
AGGATAAGCACCTCGTGGGCGGGTCCCTTCCACCATGGAACGGTTCTCCA
CGCCTAATACGGCTTTTACCCCTCCGCGTGCCTGCTGAACACGCTCTCAT
CCCCTTACTCTGGAAACAACGCAGCATCCACCCCTCCGGCCGAATGGCCC
TCTCCGTGTCACGAGACCGGACCCTTCGGCTGTGGAACCTTCTAGAAGGG
CGCTGCGCCTACGTCAAGCGCCTGCAAGGAGAGGGGGAGCTTGTGCGATG
GTCGCCGTCGGGAGACAGGTGGGGGTTAATTTCTTCCTTCCTTCTTTTGT
GCTTCCTTTCTTCTTTCTTTCCTCCCGGGTGGGTCCCTTTGTGTGTGTGC
GTGTTTTTTGTGTGGCAACTTGGCACCTGTATTGAGTCGAGGGGCGTTGT
TGTGCGGAAGGTTTTTTTATTGCTGCTGGGATCACCGTCGGCTAGCCGTT
TGTCGGTGTTGTTCTCGATCTCGCTTGAAAATTTGGCCGTACTCGTGTCT
GCCGTGTGTACGTAGCCCTTGCTCTCAAGGGGGAACCAGAGGAACAATAC
ACAACTGACGAATCACACCCCCAGGTGGCAAACAAGCACTCACCGCAGCA
CGATTCCAACAGAAGCGAAGTCGGATCAGATATAAACCATTAATATTGCA
GACCGCGTAATCACTCCGAGAAATCGGCGAGATGAGGGAGTGCCGAGCCC
TTTACCCGATGTAAGCCTAAGGTAAGAACACACCCGGGATATAGATCCCT
ATTGACCACATACGGTATTCGGGAACAAGCCGGTCTGTCGTACTGCTGTA
CTGTATATGTAGAGCCTAAATATGTACAAAAAACTATTAATAAATGGCGT
TATCCTGCGCCGGTGAGGCTTATTCTGCATGTAAATGTCAGATGTAAGGG
CCGCAGCAGAGGCTAAAACAAACTTCCCTGCGATTTTACGAAGCAACCAA
CCACCTCGGCAACTGCTGTATGCTGTATGCGGTATGCTGTGGGTATTAAT
ATTATTATACAGTAGCAGTAACGACGATGTTGCTCGTGTCGTGTGTCGCG
CGTAGGCTTCCACGGGTGTGTGTAGTGTATAGTGTACAGTTACAGTGCTT
CGACCGTCTTACCTTCCTTCAACATGGTGGGACCCCAACGCTCGCTCACT
GTGTTTTGTCAAACATCGTAATGTTTCAGGGGTACTTATGTTAATTCTTT
TGGGACTAAGGCTGTTTTCGCGTAACTGTTTGCTGTTATTATGTACCCTT
TTGTTTTGGCACTAAGGCTGTTTTCGGGTAACTGTTTGCTATTACGGTAT
CCAACTGTTACCCGAAAGCAGGCTTCGTCCCCAGGCTTAGTCCCAAAAGG
GTAAATAATAATAGCCAACAGTTACCCGAAAACAGCTTTAGTCCCAAAAG
GGTTAAGGGGGGGTATCTTTGTAGCACATGATACTGCGAGTACGGGGAGA
GCTGTTTGTTGTACTGAGCAGTCATTTCACAACAATTCCACCAGGTATAG
GTATGAATAGTTTGGGTATACTCTATTATGTGCAACTCACCAGCGAGACG
AACATAACGGCTCAATAAAAAAAATAGATGGAATCAATACTCTATGATAA
AATATAAAAGTAGGTAGTAGAGAAGGACAATGCAATCTTCTTGGCTCATA
AAAGCACATCAAAGATACTGTACATCACCAGGATATCGCTCAGGACCAAA
ACTCTTGTACCATAACCATATAACATAATACAGGATATAGTATCACACCA
CAGCATCCTACGCAAAAAGTGGGCCTCGATAGGTGTGTTTAACATAGGTG
TGTTTAACAGCTTCGACCATCTTCCCGCTTGAAAAGGTGGGACATTACCC
CAACGCTCGCTCTATGGGTTTGAAATCATTGTTTTTATTGCGGGGGGGGA
CTCCTTTATGGTTTTGAATCAATTCATTGTGTCACGGAGTTGACTCCTGA
TGACACTAAAAACAAACAATACATGCACTAGTATTAATAGTATATACATA
TACTGTACCAACCTTAACCAACGCTTCCCTTTTCTTCTCGGCAGCTATCT
CGTTGTCGTGGGCAACACCGTCGTGGTCTACAGCGCGGCGACGTCCGAGC
CTCTCGGAGAGTGCAAGCACGACGCGCGCGTGAATTCGGCGTGTTTTGTG
GGAGGGGGCGGGGGTAGCGAGGGCGGGGCAGGGGCGGCGGTGGCGACTTG
CTCGGACGACAAAAACATTCGCTTCTTCAAGACGGAGGGAGGATCGTCAT
TGGTGAGTTTCCTGTTATTTTTTCATTTTTTTTGCTTATTTCATTCTTTG
TTTTTTTGTTGTTGAATTTATTTTGTATTCTTATTATTACTCCGGAGTAT
TATTTTTTTTCTTTCCCTTTGTCTGTGTGTGTGCGTGTTTTTTTTTAATC
GGGTTCAAGATACAGTAGTTAGATATGTACATGTGAGGCCATCGTCATAA
TCTTTTATGATAATCATCATCATAACGTCGTCATCATAACGTCCATGCTC
CCAACTCAGGGACAGCTGGATGTCAGCGACGTTTGTCCGACAGGTCGCGT
GAGGGACATGTGCCACGTCGCGGCGTCTGCCGATGGCGATGGAGATGGTG
TCGGTTCGGGGGGGTCGTTGGTGGCGGTTACATCTGCGGGGGTGGTGAAC
GTGTGGGGAGTTCCTTCCCTTGAAGGCGATGTCGCGGGGGAGGGTGCGGT
GGCGTTGGACGTCCCTTTGCTGGCGACACACTTCGTAAAGGTGACCGACC
ACCGAATTCTGAGTGTGCGTTGTAGTATTGGTTTTATTGATTGATTGATT
TGTCACATTTGGAAATGATCGGCCCACCAGCCTTGATGGGCCGATCCCGC
TCGTGGTTAGATGAGAAAGGGGGTGACATCGAAGAACATTAAATGGGATT
TTCTGCATAGCTCTATAGTATATTAAAGAATGAGTGAACACCGCGCTCGG
AGTCAGATAGGCTTCCGCACAAGACAGTATCTATTTGCTGTTGTATCCTA
CTACTGTAATAGCTCGTTTGTTTGCCCTCTCTTAGGACTTTTGTTTTTTT
CCCGCAAAAAATGTAAAAATTTCCAGTTCTTGTCCGTGCGTATTCTTTTA
AAAGTAGGCCTTTCCTTGCGCCAGTGATTGGGTAAAGAGAGGGCGGCCCC
TCGCAAAAAGAAGGGGTTTTGTACAGAGTTTGGGGGCGTTTTTTTCGAGA
GTCGAAATCACACCGGAGCAAAAAAGATACGACCGGCTATGGGAAGAAAT
GGCAAACCCCGCCGATCGAGAGAAGTCGGGGACAACGCCAGGAAATGTCA
GGACATGGTAATCCAACGCATAACGTGATCCTGCTTGTCGTCGAAGCGTG
TTGAACTTTCCCTCACCCCTAACGATTTTCGGCGCGAGAGAGATTGATTG
AGCTTTTAGTGGTGAACAGTTTTTTACATCGCCTAGCACTATTATGTAGA
ACCACCAAAATACAGCCAGCTCAACTACGTTCATTGTGCTGTAGTGGCTC
GTGGTCGCGAAGGGATGGGTTGATCGATCAATCCGTAGACACCTGCCTCT
GTTTTTAATTTATTTCGCGCGTCTTGTTGAGCAAATTCCCTCGCCTCTCG
CGCCGACTTTCATCGGAGTTTGTTTGTTTGATTGTTTTTTCATCTTCGCC
GCTTACCCCCGGAGAGACAGCACTCCGACTCCGAGCGTCTGTGTCAATTA
TTTCGTATGTAATATATGATACTATAACCGCGCGCCCGGTGGTTGATCTG
GTTGACCGACAGCCCAGTACAGTACAGTAGCCGGAGGACCCGGGTTCAAT
TCCCGGCAAAGTCGGTATTTATTCGTTTTCTCCACCTCCGTCGCGGAAAG
CGCGAGAGCGTGAGTAAGCAAAACACCCGAGAAATCCGCGAGCTGTGGGA
GTGCCGAACCCAATCCAGTCGCGATATTAATCAAAGGTGATAGCATACCG
GGGATAAGATAAGACAAGATAAGATAAGAGAGGTGGGATGATCCCTTGTG
ACCACAGACGGAGCTCGGAAAAGCAAATCTAAGATATGTGTGCCAGCACA
AACTATTAGTAACATTAATACTAATACCAGGTACAGTATATCTTCACTCT
AAATTAATTAATTTTAATAGCGCTTTGACCGATTTTTAGTACAAGTATCG
ATTTTAGATAACGACATGGTGTCACCGGAATCCTATAGGAAAAAGTGATG
CCAAACAACTTGATATTAGTGTTGAGCGCCAAGTGTTGAAAATAGTAGGA
TTTTTCACCTCACGGGCGTAGCCTAAATATTAGTATTAATCGTATTACTA
GTAATAGGTAGTTCCGTATTTGTTTTTTAGATTTATCGATTTCTCACCTA
TAATAGACAACGAGTGGGATAAGTAAACCATTGGTTGGCCGGCCGTTTTT
TTTTTTTTTTGCACACACATGATAGACTTGCTCTTCCGAGGTCCGTCTGT
GGTCAACATGGATCATCCTATCTCTCTTATCCCCGGTTCTCACCTTTGAT
TTTCATCGCGCGTTGGGTTCGACACTCCCGCAGCTCGCCGATTTCTCGGA
TTTTGCATTCTCACGCTCTCGCGCTTTCCGCGGCGGAGGTAGAGAAAGTA
AATAAAAATCGACTCTGCCCGGATTCGAACCCCCGCCCTCCGCTTACCAG
GACAGTGGTGGACCAGTTAAAACCACGGAGCTGTAAGTTTGAAAACAAAC
CAAGTCAATCAAATCAAATCCAGGTGGCCCGCGGTCTCGGGTGCACCTCC
CGCTCTCTCTACAGGTACGTATCTACCATAATTCATCCTCCTTTCATGTT
GCCGCCCCAACATTCCATTAATTCATGCGACACTTTGCTTTGCTTTTATT
ATTGCTTTATTTTGCTCGACACATGTCAGGGCGAGCCGCGGTTCACGTGC
GTGGCAGGGTGTCTCAGCGTCGAGGCTTGCTCCCCGGAACCCCAAGCGGC
AGCAAGAGGCAAAAAAAACTCCAAGAAGAGGAAGCAGCTGCACCAGCACC
GCTCGCAGCGGCAGGGCGCTCTCGAAGGGGGAGAGACGGCCGGAGGAGGA
GATGGGGGGGGAGACAGGGAACACGCCGGGGGCGTCCCCGATACTGCTGC
GGGAAGCGGGAAGAAGAAGAAATCCAAGCGAAAAAAAGCGAGGGAGGGTT
TGCAGAGCGCTGGAGGCGGCGGCGGCGGGGGCGGCGGGGGCAGGAAAGGG
GCCGCGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11528:1561..7269-

>mRNA_S-dermatodea_contig11528.983.1 ID=mRNA_S-dermatodea_contig11528.983.1|Name=mRNA_S-dermatodea_contig11528.983.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at S-dermatodea_contig11528:1561..7269- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTTCTACAAGTCCACGCACCTCCTCACGGGCAGCGAGGACCACAG
CGTCTGCATCTGGCGCGTGCACGACTGGGCCCTTCTCCACGTGCTGGGGG
GGCACAAGGCAGCGGTTTCATCTCTGAGATGGAGTTCTACAAGTCCACGC
ACCTCCTCACGGGCAGCGAGGACCACAGCGTCTGCATCTGGCGCGTGCAC
GACTGGGCCCTTCTCCACGTGCTGGGGGGGCACAAGGCAGCGGTTTCATC
TCTGAGCATCCACCCCTCCGGCCGAATGGCCCTCTCCGTGTCACGAGACC
GGACCCTTCGGCTGTGGAACCTTCTAGAAGGGCGCTGCGCCTACGTCAAG
CGCCTGCAAGGAGAGGGGGAGCTTGTGCGATGGTCGCCGTCGGGAGACAG
CATCCACCCCTCCGGCCGAATGGCCCTCTCCGTGTCACGAGACCGGACCC
TTCGGCTGTGGAACCTTCTAGAAGGGCGCTGCGCCTACGTCAAGCGCCTG
CAAGGAGAGGGGGAGCTTGTGCGATGGTCGCCGTCGGGAGACAGCTATCT
CGTTGTCGTGGGCAACACCGTCGTGGTCTACAGCGCGGCGACGTCCGAGC
CTCTCGGAGAGTGCAAGCACGACGCGCGCGTGAATTCGGCGTGTTTTGTG
GGAGGGGGCGGGGGTAGCGAGGGCGGGGCAGGGGCGGCGGTGGCGACTTG
CTCGGACGACAAAAACATTCGCTTCTTCAAGACGGAGGGAGGATCGTCAT
TGCTATCTCGTTGTCGTGGGCAACACCGTCGTGGTCTACAGCGCGGCGAC
GTCCGAGCCTCTCGGAGAGTGCAAGCACGACGCGCGCGTGAATTCGGCGT
GTTTTGTGGGAGGGGGCGGGGGTAGCGAGGGCGGGGCAGGGGCGGCGGTG
GCGACTTGCTCGGACGACAAAAACATTCGCTTCTTCAAGACGGAGGGAGG
ATCGTCATTGGGACAGCTGGATGTCAGCGACGTTTGTCCGACAGGTCGCG
TGAGGGACATGTGCCACGTCGCGGCGTCTGCCGATGGCGATGGAGATGGT
GTCGGTTCGGGGGGGTCGTTGGTGGCGGTTACATCTGCGGGGGTGGTGAA
CGTGTGGGGAGTTCCTTCCCTTGAAGGCGATGTCGCGGGGGAGGGTGCGG
TGGCGTTGGACGTCCCTTTGCTGGCGACACACTTCGTAAAGGGACAGCTG
GATGTCAGCGACGTTTGTCCGACAGGTCGCGTGAGGGACATGTGCCACGT
CGCGGCGTCTGCCGATGGCGATGGAGATGGTGTCGGTTCGGGGGGGTCGT
TGGTGGCGGTTACATCTGCGGGGGTGGTGAACGTGTGGGGAGTTCCTTCC
CTTGAAGGCGATGTCGCGGGGGAGGGTGCGGTGGCGTTGGACGTCCCTTT
GCTGGCGACACACTTCGTAAAGGGCGAGCCGCGGTTCACGTGCGTGGCAG
GGTGTCTCAGCGTCGAGGCTTGCTCCCCGGAACCCCAAGCGGCAGCAAGA
GGCAAAAAAAACTCCAAGAAGAGGAAGCAGCTGCACCAGCACCGCTCGCA
GCGGCAGGGCGCTCTCGAAGGGGGAGAGACGGCCGGAGGAGGAGATGGGG
GGGGAGACAGGGAACACGCCGGGGGCGTCCCCGATACTGCTGCGGGAAGC
GGGAAGAAGAAGAAATCCAAGCGAAAAAAAGCGAGGGAGGGTTTGCAGAG
CGCTGGAGGCGGCGGCGGCGGGGGCGGCGGGGGCAGGAAAGGGGCCGCGG
GCGGCGAGCCGCGGTTCACGTGCGTGGCAGGGTGTCTCAGCGTCGAGGCT
TGCTCCCCGGAACCCCAAGCGGCAGCAAGAGGCAAAAAAAACTCCAAGAA
GAGGAAGCAGCTGCACCAGCACCGCTCGCAGCGGCAGGGCGCTCTCGAAG
GGGGAGAGACGGCCGGAGGAGGAGATGGGGGGGGAGACAGGGAACACGCC
GGGGGCGTCCCCGATACTGCTGCGGGAAGCGGGAAGAAGAAGAAATCCAA
GCGAAAAAAAGCGAGGGAGGGTTTGCAGAGCGCTGGAGGCGGCGGCGGCG
GGGGCGGCGGGGGCAGGAAAGGGGCCGCGGGC
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