mRNA_S-dermatodea_contig11512.980.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11512.980.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE) HSP 1 Score: 284 bits (726), Expect = 3.130e-76 Identity = 198/395 (50.13%), Postives = 234/395 (59.24%), Query Frame = 1
Query: 4 VVDEEDLLEELVSKLRRRRRQAAGAQEIDAIEDERLHVRARLAALRSVKLSELRALRLAGAYRLFPELLLEHPNRAENAFRSLLLSGIAIRDVDEWEDHHMTSVASTGGGGG---------ERALDGLGGKGCRLAEVDGSAVAIVE--VDCRDPEAERALVATLLRFSPSSRRQSTGGGEPASPLPSCRPPPELATVTGISLRGERALLEVPVEGAITAKAWLTLSAAGGIGAXXXXXXXXXXXXXXAANGIRRLAIAAGITEPKETLQPSAXXXXXXXXXXXXTVEGRRRRSPA-PWEVWAVMVQALRGLAAVHAISEESTHGAVCLSNILVAARPTTPKSAGGASAATXXXXXXXXXXXXSAGANASKFATSSAVTARRKLLPPREARAARP 1152
VVDEEDLL+EL S+L RRRRQAA A+EI +I+DERLH RARLAALRS KL+EL+ALR +GAYR FPELLLEHP+ AE AFRSLLLSG+ +RDVDEWEDHH+ SVAS+ G G ER L GLGG GCRLAE+DGSAVAIVE V CRD +AER LVA +L F P +RR PPE+A V+G+SL+ +ALLEV VEGA+TAKAWL SA G +G + P +P+ V S EVWAVM+QAL GLAAVHA+SE S H AVCL NILVAAR ++P+S G S G+++S + R KL PP A ARP
Sbjct: 958 VVDEEDLLKELESRLGRRRRQAADAEEIRSIDDERLHARARLAALRSAKLAELKALRRSGAYRRFPELLLEHPDPAERAFRSLLLSGVELRDVDEWEDHHLASVASSAGAAGPERASSEVGERVLAGLGGVGCRLAEIDGSAVAIVEASVGCRDRQAERDLVADILHFIPRARRL----------------PPEVAVVSGVSLQEGKALLEVNVEGALTAKAWLAASATAG-----------------TVDG-------KPVDHPGTEAEPAVDGAEDAPAPKVAAVAVDSASSERFQVEVWAVMIQALAGLAAVHAVSERSVHRAVCLDNILVAAR-SSPESPPGRLLPLAGGGGEGAVAPNSDGSSSSSDPSGQHGFRRAKLGPPFPAALARP 1311
BLAST of mRNA_S-dermatodea_contig11512.980.1 vs. uniprot
Match: D8LGZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ1_ECTSI) HSP 1 Score: 184 bits (467), Expect = 9.660e-47 Identity = 188/484 (38.84%), Postives = 223/484 (46.07%), Query Frame = 2
Query: 1436 MLEEDVSRRCTALEALESDYFRVPPSSSPDPIYPKNWSPFPVRTRRPSSTAPGGQPHWVVVALAAGR-KDDGDN--DRTWLRSCYAVDVIHPRTGFGDGSXXXXXXXXXXXXVATAVERESAEIEALLRRSMPGARLHRLVRLQDRGRWLRYACERDAA--TAAXXXXXXXXXXXSTP--------------------TVSRLFADPREVLSREALAAVRA----PLSLTSLAGKTGGRTIPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTETARFATVAFAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDSDGGSDDPFQGVE--PAIDDLTRIGGIGITAPRGA---SGRRGRRAFLPVAAGLSSPAVNAIKSLESLRGSVDGPGPVGGCGGGAGGGTAEVFTVRREACYPEYLVTFSL 2785
MLEED SRRCT LEAL SDYFR P P+P YP WSPFPVRTR SSTAPGGQPHWV VALAAG K D + DR W S YAV+V G A + E + +EALLR S+PGARL RLVRLQDR R LR+ C+RDAA +AAXXXXXXXXXXX P +V+RLFADPR+V++ +AL A+ P S T G G T+ + +ARFA VA A P XXXXXXXXXXX D DPF ++ +DDLTR+ GIG+++P + +G G R P A GLSSPAV++I E++ G TA V+TVRREACYPEYL TF+L
Sbjct: 1 MLEEDPSRRCTVLEALSSDYFRALPLRGPNPAYPLQWSPFPVRTRSFSSTAPGGQPHWVAVALAAGGLKGDYASALDRHWFDSTYAVEVPLLAAAVPGG--------------ACSEGGEGSRVEALLRSSLPGARLVRLVRLQDRARMLRFVCDRDAAISSAAXXXXXXXXXXXXXPGFPNTGXXXXXXXXXSVGRVSVARLFADPRDVVAGDALTAISTSGSDPASATR--GGPGCWTVGGTAATTTPAAEEDLRDNDDARVRGAGGPVSKAGRDLCRLAASARFAAVALAQPQIERRDEGGRGGGKSMTLRTLAVVRAIVSGDPEEHPGWRREGTCSGSEXXXXXXXXXXXNGWLQSVAAAAV---------DRDKMDPFLDIDCMAKVDDLTRVAGIGLSSPPPSVADAGGSGNRTLEP-APGLSSPAVHSITDWEAVSGXXXXXXXXXXXXXXXXXXTAAVYTVRREACYPEYLATFAL 458 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11512.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11512.980.1 >prot_S-dermatodea_contig11512.980.1 ID=prot_S-dermatodea_contig11512.980.1|Name=mRNA_S-dermatodea_contig11512.980.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=331bp MTSVASTGGGGGERALDGLGGKGCRLAEVDGSAVAIVEVDCRDPEAERALback to top mRNA from alignment at S-dermatodea_contig11512:478..7385- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11512.980.1 ID=mRNA_S-dermatodea_contig11512.980.1|Name=mRNA_S-dermatodea_contig11512.980.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6908bp|location=Sequence derived from alignment at S-dermatodea_contig11512:478..7385- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11512:478..7385- >mRNA_S-dermatodea_contig11512.980.1 ID=mRNA_S-dermatodea_contig11512.980.1|Name=mRNA_S-dermatodea_contig11512.980.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at S-dermatodea_contig11512:478..7385- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |