mRNA_S-dermatodea_contig1151.977.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1151.977.1
Unique NamemRNA_S-dermatodea_contig1151.977.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1151.977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1151contigS-dermatodea_contig1151:13673..15172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1151.977.1prot_S-dermatodea_contig1151.977.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1151 13673..15171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.635624-CDS-S-dermatodea_contig1151:13672..138041622924206.635624-CDS-S-dermatodea_contig1151:13672..13804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 13673..13804 +
1694079092.453619-CDS-S-dermatodea_contig1151:13672..138041694079092.453619-CDS-S-dermatodea_contig1151:13672..13804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 13673..13804 +
1622924206.6466868-CDS-S-dermatodea_contig1151:14093..142851622924206.6466868-CDS-S-dermatodea_contig1151:14093..14285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 14094..14285 +
1694079092.4646866-CDS-S-dermatodea_contig1151:14093..142851694079092.4646866-CDS-S-dermatodea_contig1151:14093..14285Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 14094..14285 +
1622924206.66158-CDS-S-dermatodea_contig1151:14654..147711622924206.66158-CDS-S-dermatodea_contig1151:14654..14771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 14655..14771 +
1694079092.4743593-CDS-S-dermatodea_contig1151:14654..147711694079092.4743593-CDS-S-dermatodea_contig1151:14654..14771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 14655..14771 +
1622924206.6732738-CDS-S-dermatodea_contig1151:15051..151711622924206.6732738-CDS-S-dermatodea_contig1151:15051..15171Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 15052..15171 +
1694079092.4825633-CDS-S-dermatodea_contig1151:15051..151711694079092.4825633-CDS-S-dermatodea_contig1151:15051..15171Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 15052..15171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1151.977.1

>prot_S-dermatodea_contig1151.977.1 ID=prot_S-dermatodea_contig1151.977.1|Name=mRNA_S-dermatodea_contig1151.977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=187bp
RTIRAAASGREKWQEHRSKCAGKDVGEEGVIDDGDGTAILDIEQNACVIP
FSPHGEAPNEIVESGSQRAPRAADPDGRRRVQMLRIGQGVGLDLSPAIDA
LLLAGKENNADSNLLDTSRTAPAASGREAMGGLDYSLPDTTTQGQYQGSG
EAAAWRQVDQEHEEVDKRDGDRFDDDDDDGQSEVTTE
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mRNA from alignment at S-dermatodea_contig1151:13673..15172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1151.977.1 ID=mRNA_S-dermatodea_contig1151.977.1|Name=mRNA_S-dermatodea_contig1151.977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1500bp|location=Sequence derived from alignment at S-dermatodea_contig1151:13673..15172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAACGATTCGAGCCGCGGCATCAGGGCGGGAAAAATGGCAGGAACACCG
CAGTAAGTGCGCCGGAAAGGACGTTGGGGAAGAGGGTGTCATAGACGACG
GCGACGGCACGGCGATACTCGACATCGAGCAGGTGGTTATGCTATCTATC
GTATGGCAGGCTGAACTAGAAACGTGTGTGCACTGCATCCCGATAAAAAT
ACGCTTTTCGGCGAAGGGCGGTGCGTTTCACAGGTCTTCTAGAACGCAGT
GCGCGTCTCGCGTGGCCCAAAGCAGGGTCTGCGGTACAAAAAAAGGTGCA
GGCGTCCGATAACACTCTGTGCAGTAGGCGAGGAAATTGCAACTTTTGCA
GTATCCACCTTGCGTCTTAAAACGTGTAGCCTGTACATACCACCTTCACT
TTTGTCGTCTCGTGTGGACAGAATGCTTGTGTGATTCCATTCTCCCCCCA
CGGAGAAGCCCCAAATGAAATAGTGGAATCCGGGAGTCAGCGGGCGCCAA
GAGCAGCGGACCCTGATGGACGGCGGAGGGTGCAGATGCTAAGGATAGGG
CAGGGGGTCGGACTTGACCTGTCTCCAGCGATCGACGCCCTCCTCTTGGC
TGGAAAGGAAAATGTGAGTCAGACACCCAACGGATGGCACTGTACCTGAA
TGGAAGCAACGACTTCGCGCGTACGCGAGGCCGGTACTGAAAGAGGCGGC
TTGTTGGTCGGTGTCTTAGCAGTTTTGTTGTCGCGCAAGAAAACCAAGCG
AAAATTTGCTCTGACCTGTGGCAGCTTCGGTTGGACATCATGTAGGCGTT
GGCGATTAACTGTTGCGAGTGACTGAAAGCACGTCCGGCGAACGGCCGTC
TGAAATCACCCGCGAAAACATTTAACAAGACCAAAGCCCAACTGTTATAG
GCGATTAAACAGAAGAACGACGGGTTTTCACGACCCTCCATATTTTGTCA
AATCCCTAACACCTGTTCGACGTGCTCAGCAGAATGCGGACAGCAACTTA
CTGGACACGTCCAGAACGGCCCCGGCGGCATCAGGAAGGGAGGCAATGGG
AGGGCTCGATTATAGCTTACCCGACACTACAACGCAGGGACAATACCAAG
TGCGCGCTGGCTGGTCCTTGCTTGTTTCGCGGTCGCCGTTTGTGCGCCGT
TGGGCGCTCCCGAAGAGTAGATCCTAGAATTTTTCGACCGCTCGTTCATC
GCATGAGCAATACCTGATTTGCCTCGTGAATCGCAGTGTGTTTAATGCCT
CGCACGGCCACCCCACCACGGCTCCTCGGACGGTGCAGAGAATAAACCGT
ACCGCTGTCGGGTATATCTGACACACCCCGTCCTCAGCGTCAGCTGACAA
TTGAAATGGCACATACGGTACCGTGTCAGGGCTCGGGCGAAGCGGCAGCG
TGGCGACAAGTAGACCAGGAGCACGAAGAAGTAGACAAACGGGACGGCGA
TCGCTTCGACGACGACGACGACGATGGGCAGTCTGAAGTAACGACGGAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1151:13673..15172+

>mRNA_S-dermatodea_contig1151.977.1 ID=mRNA_S-dermatodea_contig1151.977.1|Name=mRNA_S-dermatodea_contig1151.977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at S-dermatodea_contig1151:13673..15172+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAACGATTCGAGCCGCGGCATCAGGGCGGGAAAAATGGCAGGAACACCG
CAGTAAGTGCGCCGGAAAGGACGTTGGGGAAGAGGGTGTCATAGACGACG
GCGACGGCACGGCGATACTCGACATCGAGCAGCGAACGATTCGAGCCGCG
GCATCAGGGCGGGAAAAATGGCAGGAACACCGCAGTAAGTGCGCCGGAAA
GGACGTTGGGGAAGAGGGTGTCATAGACGACGGCGACGGCACGGCGATAC
TCGACATCGAGCAGAATGCTTGTGTGATTCCATTCTCCCCCCACGGAGAA
GCCCCAAATGAAATAGTGGAATCCGGGAGTCAGCGGGCGCCAAGAGCAGC
GGACCCTGATGGACGGCGGAGGGTGCAGATGCTAAGGATAGGGCAGGGGG
TCGGACTTGACCTGTCTCCAGCGATCGACGCCCTCCTCTTGGCTGGAAAG
GAAAATAATGCTTGTGTGATTCCATTCTCCCCCCACGGAGAAGCCCCAAA
TGAAATAGTGGAATCCGGGAGTCAGCGGGCGCCAAGAGCAGCGGACCCTG
ATGGACGGCGGAGGGTGCAGATGCTAAGGATAGGGCAGGGGGTCGGACTT
GACCTGTCTCCAGCGATCGACGCCCTCCTCTTGGCTGGAAAGGAAAATAA
TGCGGACAGCAACTTACTGGACACGTCCAGAACGGCCCCGGCGGCATCAG
GAAGGGAGGCAATGGGAGGGCTCGATTATAGCTTACCCGACACTACAACG
CAGGGACAATACCAAAATGCGGACAGCAACTTACTGGACACGTCCAGAAC
GGCCCCGGCGGCATCAGGAAGGGAGGCAATGGGAGGGCTCGATTATAGCT
TACCCGACACTACAACGCAGGGACAATACCAAGGCTCGGGCGAAGCGGCA
GCGTGGCGACAAGTAGACCAGGAGCACGAAGAAGTAGACAAACGGGACGG
CGATCGCTTCGACGACGACGACGACGATGGGCAGTCTGAAGTAACGACGG
AAGGCTCGGGCGAAGCGGCAGCGTGGCGACAAGTAGACCAGGAGCACGAA
GAAGTAGACAAACGGGACGGCGATCGCTTCGACGACGACGACGACGATGG
GCAGTCTGAAGTAACGACGGAA
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