mRNA_S-dermatodea_contig1151.976.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1151.976.1
Unique NamemRNA_S-dermatodea_contig1151.976.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1151.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1151contigS-dermatodea_contig1151:690..2005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_000440.1
Exons2
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.5968406-CDS-S-dermatodea_contig1151:689..13191622924206.5968406-CDS-S-dermatodea_contig1151:689..1319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 690..1319 -
1694079092.423073-CDS-S-dermatodea_contig1151:689..13191694079092.423073-CDS-S-dermatodea_contig1151:689..1319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 690..1319 -
1622924206.6074255-CDS-S-dermatodea_contig1151:1747..20051622924206.6074255-CDS-S-dermatodea_contig1151:1747..2005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 1748..2005 -
1694079092.4357102-CDS-S-dermatodea_contig1151:1747..20051694079092.4357102-CDS-S-dermatodea_contig1151:1747..2005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 1748..2005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1151.976.1prot_S-dermatodea_contig1151.976.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1151 690..2005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1151.976.1

>prot_S-dermatodea_contig1151.976.1 ID=prot_S-dermatodea_contig1151.976.1|Name=mRNA_S-dermatodea_contig1151.976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=296bp
VQSCGRRGDNTPLGKYARGCRCHRRMLPPPGPPPSPSPTLRLAAANLGEG
TVPVRRRPGFSARGREQRGGEDYETCRLCRKARVSRVAADNPTATAIDDA
ASSINIAPASFLQKKRRAVNGQEDALADLAAAAIPLVPPPTPPPPEARRR
RKKRSPYNSPAAPTVSAGTPPGPPIFAGSTHDGLDDRVDREIVPRTLQDQ
PPARRSSFNRAGRASGGDPDKIQPNPTAGSPVTDDDYFTNGRQGSSPSER
HGWSGMGRKASTGGWGSSSAGSEAKRRADEIIARVEALELSFSRVE
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mRNA from alignment at S-dermatodea_contig1151:690..2005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1151.976.1 ID=mRNA_S-dermatodea_contig1151.976.1|Name=mRNA_S-dermatodea_contig1151.976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1316bp|location=Sequence derived from alignment at S-dermatodea_contig1151:690..2005- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCAGTCGTGTGGACGGCGAGGAGATAATACGCCCCTTGGGAAGTATGC
TCGAGGCTGCCGCTGCCACCGCCGAATGCTCCCTCCCCCTGGCCCACCAC
CGTCACCTTCACCAACGCTAAGGTTAGCAGCGGCCAACCTAGGTGAAGGT
ACTGTTCCTGTCCGACGACGGCCGGGTTTTTCTGCGAGGGGGCGCGAGCA
ACGGGGGGGAGAGGATTACGAGACCTGCCGTCTTTGCCGAAAAGCCAGAG
TGAGTCGAGTCGCCCATTGTACCACCGTTGACCAGGGTGGTGGCAAGAGG
ATCCTAATATAACCGTATTTCGACGGGAAGAGGAGAGCTCGCCAAAGAGA
AGAGCTGGCTGTGGTCACTGTAATGGCGTACGGGGAACAACATAACGGCA
CCGGTAGCACGTGCGGGAAGTACAGCACTCAAAATCCGATTAAAAGAAGA
TGGACCTCGCAACTCGTTCTTCTCCTGGACGACAGAGTTACGGATTTTCC
TTGCCACAAAAAAATGTGTTGTTTCTGCCTTCACCGAAGAAGGAGACTCG
GCTTGCTTCTCGACTTGCCTTGCCATCTCTGGCAAGAAAGTCACACAATC
ATTTGCCGAAACGTCCTGTTATCAAACGACCAGCGGGCGCCTCGTCTAAC
TGCGCCTTGAACGCTTCCGACTACTTTCATCGTCAGGTGGCTGCAGACAA
TCCGACAGCAACTGCGATCGACGATGCGGCTAGCAGCATTAACATTGCAC
CCGCCTCTTTCCTCCAAAAAAAGCGCCGGGCGGTGAACGGCCAAGAGGAT
GCTCTTGCAGACTTGGCAGCGGCCGCAATCCCCCTTGTACCTCCCCCCAC
ACCTCCACCCCCAGAGGCACGCCGACGAAGGAAGAAACGTTCTCCTTATA
ATTCTCCGGCCGCCCCCACAGTCAGCGCGGGAACACCGCCCGGCCCACCA
ATCTTCGCAGGAAGTACACACGATGGCTTGGACGACAGGGTTGACAGGGA
AATAGTTCCCCGCACGCTGCAGGACCAGCCGCCTGCTCGGCGGTCGAGTT
TTAACCGAGCTGGGCGCGCGTCAGGAGGAGACCCAGATAAGATACAACCG
AATCCAACGGCGGGTTCACCCGTCACTGATGATGACTATTTTACCAACGG
CCGACAAGGGAGTTCGCCTTCGGAGCGGCACGGCTGGAGCGGTATGGGTA
GGAAGGCGTCCACCGGTGGATGGGGTAGCAGCTCTGCAGGGTCCGAGGCG
AAACGCCGGGCGGACGAGATTATTGCGAGAGTCGAGGCCCTGGAACTGTC
GTTCAGTAGGGTGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1151:690..2005-

>mRNA_S-dermatodea_contig1151.976.1 ID=mRNA_S-dermatodea_contig1151.976.1|Name=mRNA_S-dermatodea_contig1151.976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1776bp|location=Sequence derived from alignment at S-dermatodea_contig1151:690..2005- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCAGTCGTGTGGACGGCGAGGAGATAATACGCCCCTTGGGAAGTATGC
TCGAGGCTGCCGCTGCCACCGCCGAATGCTCCCTCCCCCTGGCCCACCAC
CGTCACCTTCACCAACGCTAAGGTTAGCAGCGGCCAACCTAGGTGAAGGT
ACTGTTCCTGTCCGACGACGGCCGGGTTTTTCTGCGAGGGGGCGCGAGCA
ACGGGGGGGAGAGGATTACGAGACCTGCCGTCTTTGCCGAAAAGCCAGAG
TGAGTCGAGTTCAGTCGTGTGGACGGCGAGGAGATAATACGCCCCTTGGG
AAGTATGCTCGAGGCTGCCGCTGCCACCGCCGAATGCTCCCTCCCCCTGG
CCCACCACCGTCACCTTCACCAACGCTAAGGTTAGCAGCGGCCAACCTAG
GTGAAGGTACTGTTCCTGTCCGACGACGGCCGGGTTTTTCTGCGAGGGGG
CGCGAGCAACGGGGGGGAGAGGATTACGAGACCTGCCGTCTTTGCCGAAA
AGCCAGAGTGAGTCGAGTGGCTGCAGACAATCCGACAGCAACTGCGATCG
ACGATGCGGCTAGCAGCATTAACATTGCACCCGCCTCTTTCCTCCAAAAA
AAGCGCCGGGCGGTGAACGGCCAAGAGGATGCTCTTGCAGACTTGGCAGC
GGCCGCAATCCCCCTTGTACCTCCCCCCACACCTCCACCCCCAGAGGCAC
GCCGACGAAGGAAGAAACGTTCTCCTTATAATTCTCCGGCCGCCCCCACA
GTCAGCGCGGGAACACCGCCCGGCCCACCAATCTTCGCAGGAAGTACACA
CGATGGCTTGGACGACAGGGTTGACAGGGAAATAGTTCCCCGCACGCTGC
AGGACCAGCCGCCTGCTCGGCGGTCGAGTTTTAACCGAGCTGGGCGCGCG
TCAGGAGGAGACCCAGATAAGATACAACCGAATCCAACGGCGGGTTCACC
CGTCACTGATGATGACTATTTTACCAACGGCCGACAAGGGAGTTCGCCTT
CGGAGCGGCACGGCTGGAGCGGTATGGGTAGGAAGGCGTCCACCGGTGGA
TGGGGTAGCAGCTCTGCAGGGTCCGAGGCGAAACGCCGGGCGGACGAGAT
TATTGCGAGAGTCGAGGCCCTGGAACTGTCGTTCAGTAGGGTGGAGGTGG
CTGCAGACAATCCGACAGCAACTGCGATCGACGATGCGGCTAGCAGCATT
AACATTGCACCCGCCTCTTTCCTCCAAAAAAAGCGCCGGGCGGTGAACGG
CCAAGAGGATGCTCTTGCAGACTTGGCAGCGGCCGCAATCCCCCTTGTAC
CTCCCCCCACACCTCCACCCCCAGAGGCACGCCGACGAAGGAAGAAACGT
TCTCCTTATAATTCTCCGGCCGCCCCCACAGTCAGCGCGGGAACACCGCC
CGGCCCACCAATCTTCGCAGGAAGTACACACGATGGCTTGGACGACAGGG
TTGACAGGGAAATAGTTCCCCGCACGCTGCAGGACCAGCCGCCTGCTCGG
CGGTCGAGTTTTAACCGAGCTGGGCGCGCGTCAGGAGGAGACCCAGATAA
GATACAACCGAATCCAACGGCGGGTTCACCCGTCACTGATGATGACTATT
TTACCAACGGCCGACAAGGGAGTTCGCCTTCGGAGCGGCACGGCTGGAGC
GGTATGGGTAGGAAGGCGTCCACCGGTGGATGGGGTAGCAGCTCTGCAGG
GTCCGAGGCGAAACGCCGGGCGGACGAGATTATTGCGAGAGTCGAGGCCC
TGGAACTGTCGTTCAGTAGGGTGGAG
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