mRNA_S-dermatodea_contig11507.974.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11507.974.1
Unique NamemRNA_S-dermatodea_contig11507.974.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 6.290e-38
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:   10 HTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            HTHEDCL+EWL+HSGKD+CELCGA FRF PVYD  APQRV +YQVL TC +K ++KWLPL +RV++VAGLWLLFVPVCTSWL
Sbjct:   92 HTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWL 173
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.070e-37
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   10 HTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            HTHEDCL+EWL+HSGKD+CELCGA FRF PVYDP AP  V +YQVL TC +K ++KWLPL +RV++VAGLWLLFVPVCTSWL
Sbjct:   92 HTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWL 173
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.560e-22
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   16 HEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            HEDCL +WL HS KDSCELCG TF F PVY P AP  +  +QV A+C ++ +  WLP  +R  L A LWL+ VP+ TSWL
Sbjct:   76 HEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQVAASCLRRALTLWLPRALRAALAAALWLVVVPLATSWL 155
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: I2CQM3_NANGC (E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM3_NANGC)

HSP 1 Score: 95.5 bits (236), Expect = 1.750e-22
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R TH++CL++WL+HSGKDSCELC   F F PVY   AP  +   QVL  C +K V  +LP +VR+V+VA LWL  VP  TSW+
Sbjct:   71 RSTHQECLLQWLQHSGKDSCELCKHKFHFQPVYADDAPTHIPARQVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWI 153
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 5.370e-22
Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:   16 HEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            H++CL++WL+HSGKD CELCG  F+F PVY   AP ++ V++++ TC ++ +  WLP ++R++L   LWL  VP+ TSWL
Sbjct:   44 HQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVRTCLRRLITDWLPFILRILLATSLWLFVVPLTTSWL 123
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A4D9D1W8_9STRA (RING-CH-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.720e-21
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R TH++CL++WL+HSGKDSCELC   F F PVY   AP  +   QVL  C +K V  +LP +VR+V+VA LWL  VP  TSW+
Sbjct:   57 RSTHQECLLQWLQHSGKDSCELCKHKFHFQPVYADDAPTHIPARQVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWI 139
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.060e-20
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R+TH DCL +WL HSGK  CELCG  F F P+YD  AP  +   ++L T  +  ++KWLP  +RVVLV  LWL   P CTSWL
Sbjct:   59 RYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELLGTGLRVLLLKWLPFALRVVLVLLLWLAVAPWCTSWL 141
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: H3GM28_PHYRM (RING-CH-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM28_PHYRM)

HSP 1 Score: 93.2 bits (230), Expect = 3.060e-20
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R TH DCL +WL HSGK  CELCG  F F P+YD AAP  +   ++LAT  +  ++KWLP  +R  LV  LWL   P CTSWL
Sbjct:   58 RFTHSDCLEQWLTHSGKSFCELCGHEFAFTPLYDDAAPDVLPWTELLATGLRVVLLKWLPFALRAALVLVLWLAVAPWCTSWL 140
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A5D6Y1M0_9STRA (RING-CH-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1M0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.800e-20
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R+TH DCL +WL HSGK  CELCG  F F P+YD  AP  +   +++AT A+   +KWLP  VR +LV  LWL   P CTSWL
Sbjct:   82 RYTHSDCLEQWLEHSGKAFCELCGHKFAFTPLYDAGAPAVLPWSELVATVARIVCLKWLPFGVRALLVVVLWLGVAPWCTSWL 164
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BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Match: A0A2D4C320_PYTIN (RING-CH-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C320_PYTIN)

HSP 1 Score: 91.7 bits (226), Expect = 1.050e-19
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    7 RHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLATCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL 255
            R TH DCL +WL HSGK  CELCG TF F P+YD  AP  +   ++++T  + T  +W+P  +R+VLVA LWL   P CTSWL
Sbjct:   81 RFTHSDCLEQWLEHSGKTFCELCGYTFVFTPLYDANAPAVLPWSELVSTVLRLTAARWIPFALRLVLVAVLWLGVAPWCTSWL 163
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11507.974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR1_ECTSI6.290e-3876.83RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JWM1_9PHAE4.070e-3775.61RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA1.560e-2256.25RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
I2CQM3_NANGC1.750e-2254.22E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 ... [more]
A0A7S2RW40_9STRA5.370e-2248.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D1W8_9STRA4.720e-2154.22RING-CH-type domain-containing protein n=1 Tax=Nan... [more]
A0A3M6VPX7_9STRA3.060e-2053.01RING-CH-type domain-containing protein n=2 Tax=Per... [more]
H3GM28_PHYRM3.060e-2053.01RING-CH-type domain-containing protein n=1 Tax=Phy... [more]
A0A5D6Y1M0_9STRA7.800e-2053.01RING-CH-type domain-containing protein n=1 Tax=Pyt... [more]
A0A2D4C320_PYTIN1.050e-1951.81RING-CH-type domain-containing protein n=1 Tax=Pyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11507contigS-dermatodea_contig11507:584..1756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3.1e-32
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal anchor
Exons2
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.4816496-CDS-S-dermatodea_contig11507:583..7001622924206.4816496-CDS-S-dermatodea_contig11507:583..700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11507 584..700 -
1694079092.3524437-CDS-S-dermatodea_contig11507:583..7001694079092.3524437-CDS-S-dermatodea_contig11507:583..700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11507 584..700 -
1622924206.493573-CDS-S-dermatodea_contig11507:1615..17561622924206.493573-CDS-S-dermatodea_contig11507:1615..1756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11507 1616..1756 -
1694079092.3689365-CDS-S-dermatodea_contig11507:1615..17561694079092.3689365-CDS-S-dermatodea_contig11507:1615..1756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11507 1616..1756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11507.974.1prot_S-dermatodea_contig11507.974.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11507 584..1756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11507.974.1

>prot_S-dermatodea_contig11507.974.1 ID=prot_S-dermatodea_contig11507.974.1|Name=mRNA_S-dermatodea_contig11507.974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MERHTHEDCLVEWLRHSGKDSCELCGATFRFIPVYDPAAPQRVSVYQVLA
TCAKKTVMKWLPLLVRVVLVAGLWLLFVPVCTSWL*
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mRNA from alignment at S-dermatodea_contig11507:584..1756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11507.974.1 ID=mRNA_S-dermatodea_contig11507.974.1|Name=mRNA_S-dermatodea_contig11507.974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1173bp|location=Sequence derived from alignment at S-dermatodea_contig11507:584..1756- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAAGGCACACGCATGAGGATTGTTTGGTGGAATGGCTGCGACACAG
CGGGAAGGACAGCTGCGAGCTGTGCGGTGCCACATTCCGGTTCATTCCCG
TTTACGACCCGGCCGCGCCTCAGCGTGTCTCGGTGTATCAGGTGCGGCTC
GGCTCCCGCGCCCTCCCGTATCGCCGCCCGTCCTGCCGTTACGTTTGTGC
TTTCGATGTTCAAGTTAGGGGTGTCAATTGTTCGGGGGCGGGGGGAGTCG
AGAATCGATCATTTTTTGTGCAACCGTTGTGATGTCTGAAGGAGGGGGGG
GGGGGCTGCCGCCGTGCGATCAAAGCCATGGCATATAATAATAAAACCGA
CATTAGTGATTATTTTGTATTTATATCTCATCTTCGCGTGTCAGTGCCCT
CACCGTGGAATTCACACTAGATTCCTTCCTACAACAAGACGGGGGTGGAC
GCCAGAGTCGGGTTCGTATTTTGGTTTTGTTTTGTTGTGCAGGCTCGTGT
CTTTCTACAATATGGCACTGCCGTGAGAGCGCTATCGTACACTAAATAGA
TACACAACTGCTGTCGAGGACAATCTCTACAGTCACGCAAAAAAAAGGGG
TCTCAAGACTCAGTTTGAGTTCGTTTTTCCAGTATTTTTGCCTTGTGGGC
CCGGGCGGGGAGGGGGTGGGGGGGGGTTACATGTTATCCACGCCCCATTA
GGATCACTCACGCCACACTCCTCGAATACGAAATCGACAAACCTAAAGGA
CCGGGTTTTATTCTCGTTTAAAAAAAGCGTTTCGTGGCCATTGGAGCCAA
GGGCCGGGCGGAAGGGAAGAGAGGGGGGCGTCGACGTTGTTCGGGTGTTC
CACTGTGCTGTGCCAGCTCGCACAGTTGCGTCGACGTTGTTTACGGCAGC
GCCGCGACCATGATGACGACACAAGCCACTCGCGTCTCGGTAAATTTCAT
GATCTCGGTTGCTCTCTATGATTCTCTCTCTTGTGTTATGTTGTGTTTGT
AAACGACGCGTTGTCTTTGCATTTTGCCCGTTCTGCCCGCACGTCCGCGA
ACGAAGGTGCTGGCTACCTGCGCGAAGAAGACGGTGATGAAATGGCTTCC
GCTTCTCGTCCGCGTAGTGCTAGTCGCCGGTCTGTGGCTGCTGTTCGTGC
CCGTCTGCACCAGCTGGCTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11507:584..1756-

>mRNA_S-dermatodea_contig11507.974.1 ID=mRNA_S-dermatodea_contig11507.974.1|Name=mRNA_S-dermatodea_contig11507.974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig11507:584..1756- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAAGGCACACGCATGAGGATTGTTTGGTGGAATGGCTGCGACACAG
CGGGAAGGACAGCTGCGAGCTGTGCGGTGCCACATTCCGGTTCATTCCCG
TTTACGACCCGGCCGCGCCTCAGCGTGTCTCGGTGTATCAGATGGAAAGG
CACACGCATGAGGATTGTTTGGTGGAATGGCTGCGACACAGCGGGAAGGA
CAGCTGCGAGCTGTGCGGTGCCACATTCCGGTTCATTCCCGTTTACGACC
CGGCCGCGCCTCAGCGTGTCTCGGTGTATCAGGTGCTGGCTACCTGCGCG
AAGAAGACGGTGATGAAATGGCTTCCGCTTCTCGTCCGCGTAGTGCTAGT
CGCCGGTCTGTGGCTGCTGTTCGTGCCCGTCTGCACCAGCTGGCTGTGAG
TGCTGGCTACCTGCGCGAAGAAGACGGTGATGAAATGGCTTCCGCTTCTC
GTCCGCGTAGTGCTAGTCGCCGGTCTGTGGCTGCTGTTCGTGCCCGTCTG
CACCAGCTGGCTGTGA
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