mRNA_S-dermatodea_contig11490.966.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11490.966.1
Unique NamemRNA_S-dermatodea_contig11490.966.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11490.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11490contigS-dermatodea_contig11490:4402..4847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.4027176-CDS-S-dermatodea_contig11490:4401..48451622924205.4027176-CDS-S-dermatodea_contig11490:4401..4845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 4402..4845 +
1694079091.392505-CDS-S-dermatodea_contig11490:4401..48451694079091.392505-CDS-S-dermatodea_contig11490:4401..4845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 4402..4845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11490.966.1prot_S-dermatodea_contig11490.966.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11490 4402..4845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11490.966.1

>prot_S-dermatodea_contig11490.966.1 ID=prot_S-dermatodea_contig11490.966.1|Name=mRNA_S-dermatodea_contig11490.966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
LSPPPPPPPPQLPAPADFTPSKMAAVARLLYSPPSSSSSSSPRERGGSAL
IAPRRISSPPLLTPSGPSEVPTTLPRPLILRLACHRRGSPTNPDMAAFHG
RRPKRSLPSDPDMQRPTPPPTLLLLLSIDDNARTPSLSPHTLPMPMPC
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mRNA from alignment at S-dermatodea_contig11490:4402..4847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11490.966.1 ID=mRNA_S-dermatodea_contig11490.966.1|Name=mRNA_S-dermatodea_contig11490.966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=446bp|location=Sequence derived from alignment at S-dermatodea_contig11490:4402..4847+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTCGCCGCCTCCACCTCCGCCGCCCCCGCAGCTGCCCGCGCCAGCCGA
TTTCACGCCAAGCAAGATGGCGGCCGTGGCTCGGCTACTGTACTCTCCTC
CCTCTTCGTCGTCCTCCTCTTCTCCGAGGGAGAGGGGCGGCTCCGCGTTG
ATCGCGCCCCGACGCATCAGCTCGCCCCCACTCCTGACACCGTCGGGCCC
GTCGGAGGTACCGACAACTCTCCCCCGACCCCTCATCCTCCGGCTCGCCT
GCCACCGCCGCGGCTCTCCTACAAACCCAGACATGGCTGCCTTCCACGGG
CGACGGCCGAAGCGCTCGCTCCCGTCGGACCCCGACATGCAACGCCCAAC
GCCGCCACCAACGCTGCTGCTGCTGTTGAGCATCGATGATAACGCTCGGA
CGCCGTCGCTGTCGCCGCATACGCTGCCCATGCCCATGCCCTGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11490:4402..4847+

>mRNA_S-dermatodea_contig11490.966.1 ID=mRNA_S-dermatodea_contig11490.966.1|Name=mRNA_S-dermatodea_contig11490.966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig11490:4402..4847+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGTCGCCGCCTCCACCTCCGCCGCCCCCGCAGCTGCCCGCGCCAGCCGA
TTTCACGCCAAGCAAGATGGCGGCCGTGGCTCGGCTACTGTACTCTCCTC
CCTCTTCGTCGTCCTCCTCTTCTCCGAGGGAGAGGGGCGGCTCCGCGTTG
ATCGCGCCCCGACGCATCAGCTCGCCCCCACTCCTGACACCGTCGGGCCC
GTCGGAGGTACCGACAACTCTCCCCCGACCCCTCATCCTCCGGCTCGCCT
GCCACCGCCGCGGCTCTCCTACAAACCCAGACATGGCTGCCTTCCACGGG
CGACGGCCGAAGCGCTCGCTCCCGTCGGACCCCGACATGCAACGCCCAAC
GCCGCCACCAACGCTGCTGCTGCTGTTGAGCATCGATGATAACGCTCGGA
CGCCGTCGCTGTCGCCGCATACGCTGCCCATGCCCATGCCCTGCCTGTCG
CCGCCTCCACCTCCGCCGCCCCCGCAGCTGCCCGCGCCAGCCGATTTCAC
GCCAAGCAAGATGGCGGCCGTGGCTCGGCTACTGTACTCTCCTCCCTCTT
CGTCGTCCTCCTCTTCTCCGAGGGAGAGGGGCGGCTCCGCGTTGATCGCG
CCCCGACGCATCAGCTCGCCCCCACTCCTGACACCGTCGGGCCCGTCGGA
GGTACCGACAACTCTCCCCCGACCCCTCATCCTCCGGCTCGCCTGCCACC
GCCGCGGCTCTCCTACAAACCCAGACATGGCTGCCTTCCACGGGCGACGG
CCGAAGCGCTCGCTCCCGTCGGACCCCGACATGCAACGCCCAACGCCGCC
ACCAACGCTGCTGCTGCTGTTGAGCATCGATGATAACGCTCGGACGCCGT
CGCTGTCGCCGCATACGCTGCCCATGCCCATGCCCTGC
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