mRNA_S-dermatodea_contig11481.963.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11481.963.1
Unique NamemRNA_S-dermatodea_contig11481.963.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: D7FNW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW3_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 3.800e-53
Identity = 99/169 (58.58%), Postives = 113/169 (66.86%), Query Frame = 3 
Query:  318 RDLNLAAGMETALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGIAGSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEM 824
            RD  L AG+E  LD++G STQW VAGAVG  L+TRADV+TLV+VLGSL+NAV SKVLKK INQVRPDGAQL+DPGMPSSHAM+                                Q LL +YA+TASLWRVKAGFHTLPQV+VGA VGA+DA LWY     Y  SQ  +
Sbjct:    3 RDKTLLAGIELGLDVLGSSTQWAVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKTINQVRPDGAQLSDPGMPSSHAMT--------------------------------QTLLGMYALTASLWRVKAGFHTLPQVAVGAAVGAVDAVLWYHLCHPYLLSQARL 139
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A6U4CT78_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CT78_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.290e-32
Identity = 83/206 (40.29%), Postives = 112/206 (54.37%), Query Frame = 3 
Query:  345 ETALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTY----LAIGLEEHGIA---GSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMFFGGPDVPIELAVGVCVVTFLTFGNAQRRISRVLEGLQD 941
            E A   +G ST+W V+G V A LV R DV  L +V+GS+LNA+ SK+LK+ +NQ RPD A  TDPGMPSSHA SLFF+G Y    +A       +A   G P    P        ++  Y    ++WRV  G+HTLPQV+VGAVVG+  A  WY          ++ F   P +P      + V   LT G    +++R+L   +D
Sbjct:   29 ERAAYAIGRSTKWTVSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILAYISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGWYAACRPLVHDFLKAFVPEP-LPFFAVAAIGVGGVLTVGKVGEKLNRLLAKRKD 233
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A7S2WS98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS98_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.270e-32
Identity = 85/185 (45.95%), Postives = 108/185 (58.38%), Query Frame = 3 
Query:  243 VGARQAVNSGIPDLEAEIVSDSTAERDLNLAAGMETALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGIAGSPISQLPLDVFEAQA----LLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWY 785
            V  R+ V+ G P + A   + S  E D+     + +A   +G S + +V  AV   L+ R D   L WVLG+LLNAVL+KVLK+ INQ RP+GA+  DPGMPSSHA SLFFL ++LA   +      SP+  LP       A    LL  YA  AS WRV AG+HT PQV VG VVG+L   LW+
Sbjct:    9 VPRRRGVSWG-PAVTACRAAGSGEEGDMGALGVVASA---IGSSARILVGSAVAVALLVRRDAAALGWVLGALLNAVLAKVLKRLINQSRPEGARSDDPGMPSSHAQSLFFLASFLAAAAQFWEPLPSPL--LPTYTAGHSAGIAVLLLAYAWLASAWRVGAGYHTAPQVLVGGVVGSLTGMLWF 187
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A6H5KI89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI89_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.540e-31
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 3 
Query:  288 AEIVSD-STAERDLNLAAGMETALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAM 563
            AE ++D +T  RD  L AG+E  LD++G STQWVVAGAVG  L+TRADV+TLV+VLGSL+NAV SKVLKK INQVRP+GAQL+DPGMPSSHAM
Sbjct:  119 AETLADGATMGRDKTLPAGIELGLDVLGSSTQWVVAGAVGVALITRADVDTLVYVLGSLINAVFSKVLKKNINQVRPEGAQLSDPGMPSSHAM 211
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A0G4EJI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJI9_VITBC)

HSP 1 Score: 129 bits (325), Expect = 3.730e-31
Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 3 
Query:  360 LVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGIAGSPISQLP----LDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMFF----GGPDVPIELAVGVCVVTFLTFGNAQRRISRVL 926
            L G S +++V+G V   LV R D    VWV+GSLLNAVL KVLK+  N  RPD A ++DPGMPSSHAMSL FL   L   + +         +LP    LD   A  L++ YA+ +++WRV+A  HT  QV+VG  VG     +WY+  +      +E  F    G P +P    VG+C++  LT G+ +R+I ++L
Sbjct:  132 LCGLSARFLVSGLVFLALVMRRDAAVTVWVIGSLLNAVLGKVLKRLFNHSRPDEATVSDPGMPSSHAMSLSFLSVSLIRAIID-------ADRLPAWWRLDKRWAVVLVSSYALLSAVWRVRANLHTSEQVAVGGAVGGTVGLVWYQLGKNGINKWMERQFVLMTGKPLLPWGWLVGICLLGSLTVGSVERKIHKLL 321
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A4D9CV92_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV92_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.360e-30
Identity = 73/176 (41.48%), Postives = 102/176 (57.95%), Query Frame = 3 
Query:  411 LVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGL-EEHGIAGSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMF---FGGPDVPIELAVGVCVVTFLTFGNAQRRISRVL 926
            L+ R D   + + +G++LNA+L K+LK+ I + RPDGA L DPGMPSSHAM+LF++  +L   L ++ GI   P    PLDV    AL  +Y   AS WRV +G HT  Q+ +GA VG      W R   +    QV  F   + G  VP+   VGV VV  LT G+ +R+I++ +
Sbjct:    2 LLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGIGMLP-PWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILIGAGVGGGVGLAWERECAMVCDHQVGAFLARYKGGQVPVVYLVGVMVVGALTVGSVERKIAKAM 176
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A7S1XLD3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLD3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.270e-28
Identity = 77/192 (40.10%), Postives = 104/192 (54.17%), Query Frame = 3 
Query:  387 VAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTY----LAIGLEEHGIA---GSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMFFGGPDVPIELAVGVCVVTFLTFGNAQRRISRVLEGLQD 941
            V+G V A LV R DV  L +V+GS+LNA+ SK+LK+ +NQ RPD A  TDPGMPSSHA SLFF+G Y    +A       +A   G P    P        ++  Y    ++WRV  G+HTLPQV+VGAVVG+  A  WY          ++ F   P +P      + V   LT G    +++R+L   +D
Sbjct:   70 VSGGVAAALVLRRDVPALAFVVGSVLNALSSKLLKRLLNQKRPDTATQTDPGMPSSHAQSLFFIGGYAMRAVAATPAPEALAAALGLPAKAGPGLQLALNPVILAYISYCAVWRVAVGYHTLPQVAVGAVVGSAAALGWYAACRPLVHDFLKAFVPEP-LPFFAVAAIGVGGVLTVGKVGEKLNRLLAKRKD 260
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: K8Z811_NANGC (Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z811_NANGC)

HSP 1 Score: 117 bits (293), Expect = 3.640e-27
Identity = 67/147 (45.58%), Postives = 88/147 (59.86%), Query Frame = 3 
Query:  351 ALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGL-EEHGIAGSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYR 788
            A  L+G ST+W VA  V   L+ R D   + + +G++LNA+L K+LK+ I + RPDGA L DPGMPSSHAM+LF++  +L   L ++ GI   P    PLDV    AL  +Y   AS WRV +G HT  Q+ VGA VG      W R
Sbjct:  126 AFQLLGKSTRWTVASLVAVMLLVRRDAAIVNFTVGAILNAMLGKILKRLIKEARPDGAVLEDPGMPSSHAMALFYMSAFLGSALCQKRGIGVLP-PWWPLDVLPTIALGGLYVSVASAWRVFSGLHTSAQILVGAGVGGGVGLAWER 271
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A7S1NE02_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NE02_9EUGL)

HSP 1 Score: 114 bits (284), Expect = 2.310e-26
Identity = 71/187 (37.97%), Postives = 102/187 (54.55%), Query Frame = 3 
Query:  351 ALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGIAGSPISQLPLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMFFGGPDVPIELAVGVCVVTFLTFGNAQRR 911
            A+D+VG +T++ V+  VG +LV     + L  V+G  LNA L KVLK+ IN+ RP+GA+  DPGMPSSHAMSL FL  Y +I L   G+A          V  A  L+ VY++ + ++R++ GFHT  QV VG   G ++A  W  F       +V  +     +P  + +GV  +  L     Q R
Sbjct:   30 AIDVVGSTTKYTVSALVGTSLVLIRTTDVLNMVVGGGLNAALCKVLKRVINKSRPEGARYKDPGMPSSHAMSLGFLSCYTSIILLGLGLAWP-------QVVAATVLMQVYSLASLVYRIQKGFHTPAQVQVGYTFGTVNALSWNHFFSHALDCKVGCYLQAGKLPWSMTLGVMFLVGLVVMERQLR 209
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BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Match: A0A7S4FA55_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA55_CHRCT)

HSP 1 Score: 114 bits (285), Expect = 1.900e-25
Identity = 72/198 (36.36%), Postives = 106/198 (53.54%), Query Frame = 3 
Query:  375 TQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLKKGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGI-------AGSPISQLPLDVFEAQALLAVYAVTAS----------LWRVKAGFHTLPQVSVGAVVGALDAFLWYRFSEVYFTSQVEMFFGGPDVPIELAVGVCVVTFLT--FGNAQRR 911
            T+W+V+G   ATL  R D  T++ + G++LNA+LSKVLK+ IN+ RP+GA+L DPGMPSSH+ SLFF  TYL+    +          A  P + LP  VF + + LA+ A  A+           +RV  G HT  Q+  GA +G+     W  +++  F   +  +  GP      AVG+  V  +   FG A ++
Sbjct:  140 TRWIVSGLAAATLFWRQDAATILCITGAILNALLSKVLKRVINESRPEGARLADPGMPSSHSQSLFFFATYLSAAAAQAETLTLPALHATVPPAVLPSIVFISSSSLALKAAIAAGLFALASGAAAYRVAVGLHTPAQIGAGAAIGSATGLSWLLYAQPAFMHMLLRYDMGPVAIALAAVGLVTVASIERIFGAALKK 337
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11481.963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNW3_ECTSI3.800e-5358.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4CT78_9STRA2.290e-3240.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WS98_9STRA3.270e-3245.95Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6H5KI89_9PHAE2.540e-3172.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4EJI9_VITBC3.730e-3141.12Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A4D9CV92_9STRA2.360e-3041.48Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XLD3_9STRA5.270e-2840.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8Z811_NANGC3.640e-2745.58Dolichyldiphosphatase (Fragment) n=1 Tax=Nannochlo... [more]
A0A7S1NE02_9EUGL2.310e-2637.97Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4FA55_CHRCT1.900e-2536.36Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11481contigS-dermatodea_contig11481:2372..5144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D7FNW3
KEGG rclassRC00002,RC00003,RC02120,RC03389,RC03391
KEGG koko:K07252,ko:K19737
KEGG ReactionR01004,R11216,R11218,R11220
KEGG Pathwayko00510,map00510
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006629,GO:0006638,GO:0006639,GO:0006651,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008195,GO:0008610,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042175,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046339,GO:0046460,GO:0046463,GO:0046486,GO:0047874,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dolichyldiphosphatase activity
EggNOG OGsCOG0671@1,KOG3146@2759
Ec32 orthologEc-12_003140.1
EC2.1.1.320,3.6.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPhosphatidic acid phosphatase type 2/haloperoxidase
Ec32 orthologEc-12_003140.2
Exons6
Model size1028
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11481.963.1prot_S-dermatodea_contig11481.963.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11481 2444..5103 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.1296067-UTR-S-dermatodea_contig11481:2371..24431622924205.1296067-UTR-S-dermatodea_contig11481:2371..2443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 2372..2443 -
1694079091.1278749-UTR-S-dermatodea_contig11481:2371..24431694079091.1278749-UTR-S-dermatodea_contig11481:2371..2443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 2372..2443 -
1622924205.200208-UTR-S-dermatodea_contig11481:5103..51441622924205.200208-UTR-S-dermatodea_contig11481:5103..5144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 5104..5144 -
1694079091.2112167-UTR-S-dermatodea_contig11481:5103..51441694079091.2112167-UTR-S-dermatodea_contig11481:5103..5144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11481 5104..5144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.137603-CDS-S-dermatodea_contig11481:2443..25841622924205.137603-CDS-S-dermatodea_contig11481:2443..2584Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 2444..2584 -
1694079091.1397536-CDS-S-dermatodea_contig11481:2443..25841694079091.1397536-CDS-S-dermatodea_contig11481:2443..2584Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 2444..2584 -
1622924205.146757-CDS-S-dermatodea_contig11481:3286..34041622924205.146757-CDS-S-dermatodea_contig11481:3286..3404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 3287..3404 -
1694079091.1511052-CDS-S-dermatodea_contig11481:3286..34041694079091.1511052-CDS-S-dermatodea_contig11481:3286..3404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 3287..3404 -
1622924205.1543288-CDS-S-dermatodea_contig11481:3713..38471622924205.1543288-CDS-S-dermatodea_contig11481:3713..3847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 3714..3847 -
1694079091.1681557-CDS-S-dermatodea_contig11481:3713..38471694079091.1681557-CDS-S-dermatodea_contig11481:3713..3847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 3714..3847 -
1622924205.1654828-CDS-S-dermatodea_contig11481:4162..42191622924205.1654828-CDS-S-dermatodea_contig11481:4162..4219Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4163..4219 -
1694079091.1790485-CDS-S-dermatodea_contig11481:4162..42191694079091.1790485-CDS-S-dermatodea_contig11481:4162..4219Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4163..4219 -
1622924205.1784503-CDS-S-dermatodea_contig11481:4407..46561622924205.1784503-CDS-S-dermatodea_contig11481:4407..4656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4408..4656 -
1694079091.1873736-CDS-S-dermatodea_contig11481:4407..46561694079091.1873736-CDS-S-dermatodea_contig11481:4407..4656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4408..4656 -
1622924205.192889-CDS-S-dermatodea_contig11481:4887..51031622924205.192889-CDS-S-dermatodea_contig11481:4887..5103Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4888..5103 -
1694079091.196242-CDS-S-dermatodea_contig11481:4887..51031694079091.196242-CDS-S-dermatodea_contig11481:4887..5103Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11481 4888..5103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11481.963.1

>prot_S-dermatodea_contig11481.963.1 ID=prot_S-dermatodea_contig11481.963.1|Name=mRNA_S-dermatodea_contig11481.963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=305bp
MRCLWCTSLVSLVPLWRVSGFGVNSLPAAGVRLATYAPEVAYDARRRRRA
QCRAWHGPIVREARPTFVGARQAVNSGIPDLEAEIVSDSTAERDLNLAAG
METALDLVGGSTQWVVAGAVGATLVTRADVETLVWVLGSLLNAVLSKVLK
KGINQVRPDGAQLTDPGMPSSHAMSLFFLGTYLAIGLEEHGIAGSPISQL
PLDVFEAQALLAVYAVTASLWRVKAGFHTLPQVSVGAVVGALDAFLWYRF
SEVYFTSQVEMFFGGPDVPIELAVGVCVVTFLTFGNAQRRISRVLEGLQD
AKDL*
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mRNA from alignment at S-dermatodea_contig11481:2372..5144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11481.963.1 ID=mRNA_S-dermatodea_contig11481.963.1|Name=mRNA_S-dermatodea_contig11481.963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2773bp|location=Sequence derived from alignment at S-dermatodea_contig11481:2372..5144- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATCTGCGCGTAACGGCGGAAGAAGCTCGTGGTCCGGCCATGCGCTGC
TTGTGGTGCACTTCACTTGTGTCGCTGGTGCCCTTGTGGCGTGTGAGCGG
CTTCGGGGTGAACTCGCTACCAGCAGCAGGTGTTAGATTGGCAACGTACG
CGCCTGAGGTAGCGTACGACGCACGCAGAAGGCGCAGGGCACAGTGTCGA
GCTTGGCACGGACCGATTGTGCGGGAGGCGAGACCAACATTCGTGGGGGC
CAGGCAGGCGCGTGTTTGTGTTTGCGACGATAGGGGCCTATGGTTGCCGG
ATGGTTTTGGGACCCTTTTCCTAGCAGCGAGCGTAGTGCTAGCACAGGTT
TCACCAAGGCGTGCGGACAAGTATCGCAGTGCGCTCCGCCTTACAGTTGC
GGTAGCGTTAGCAGTATGATACTCCAACTCGATCGCAAGCATTTGAAGAG
CGACTCGATGCACGTGGTGGCCGTGCCCATTTATACAGGCGGTCAACAGC
GGAATTCCCGACCTGGAGGCGGAGATCGTGTCCGATTCCACTGCCGAACG
AGACTTGAACCTCGCTGCCGGGATGGAAACCGCGCTTGACTTGGTGGGCG
GCAGCACCCAGTGGGTCGTGGCTGGCGCGGTGGGCGCGACGCTGGTGACG
AGAGCGGATGTGGAGACGTTGGTGTGGGTGCTGGGGTCGTTGTTAAACGC
GGTGCTCTCGAAAGTATTGAAGAAGGGGATCAACCAGGTGCGATTTCGAA
GTCGGTGCGGAGCATGCGGGAAGTCGCCTGCACTTGTAACGGTGTTAATC
CTTTACCCCGACGCCAGCCCCGATGCTGACCCAAGGCCTGCCATGGACAC
CTTCAACGCGCGCTTTGTGTGCATACACGAGTCTAGTCTTTGACACTGTC
AATTGCTGCCATTCTGCGCCTCCAGGTCCGACCTGACGGTGCGCAGCTGA
CAGACCCCGGGATGCCTAGCTCGCATGCCATGGTGAGCTTCAAGCGCCGG
TTGGCGGCAACAAGGCGCGATTCAAGTACAAACTTGTATTATAAGTAGGC
GGTAGAGTGCCTTACGCGCCAGGGGCCACGTTTGCATCGAGGGTGAGTTC
TCTATCATACATCAGCAACACAGAGAGTGGTGCCAACACTGGCGGCAGTC
TGCTTTCGCGCCCGCCTTTGACGCGTGGGTTCTCACCCACGTCGACCGCA
GTGGAGACCTCAAAATACTCGTGCGCACATTGCGATCCTCAAAGATTCGC
CTGTCTGCTTGCTTGCTGCGTTTCCTTTTTACTTTTTCTCTTCGCAGTCT
TTGTTTTTTCTCGGGACCTACCTGGCTATCGGGCTGGAGGAGCACGGGAT
AGCAGGCTCGCCGATCTCCCAATTACCACTTGATGTGTTCGAGGCCCAGG
CGTTATTGGCTGTTTACGCTGTTACCGCCAGGTGGGCGGGGAGGGTATTC
TTCACGTTTTGCATGCCTTGGGGAAAATACAGCATTCACCACGCAAAACT
CGAAAAGATACATACGCTAGGAAAGGGGGAAGGAAAGCGATCGAAGAATC
GTACAGTATTCCTTGTGCCATGCTCTATCATAGCATCTTCCCTGAAACAT
ATCCCGTCTTTGGTCTGCTACATAGTCATTTTCTACACAGCATGTTTCAA
AACACGCCAACGTTACCTCAACTTGACCTTCGTCCGCCCACGTGTTACCT
CTCTCCTGCTCGCTTGCTGTGATGTATGTTGGTCATCCAGCCTCTGGAGG
GTAAAAGCGGGGTTTCACACGCTGCCGCAGGTATCGGTGGGTGCTGTTGT
CGGAGCGCTCGACGCCTTCTTGTGGTACCGGTTTAGCGAGGTTTACTTCA
CGTCTCAGGTGAGGCGCGTGTGGCTGTCGCGATCCTTAGGACCTTGCGGG
TCTATAGTACGAGCCGTGAATTTAACGGTAGGCGACCGCAGGAGCATGTA
TTGCAATGTAGCAGGCTACGGTCGGTTCAAAACGAAGGCAAAGCTTTCCG
AACGTTTGAAAGTATTCCAAGCTCGGACAGCTAGAGGAGGCTTTCGCCTC
GAAACGTGGAAACAGAAAAATTCGGAATTGGGAAATGCACCCTTTTCCCT
AAAAAATTCAGCGCCAAACGCCACGAATTTTGAGATTTTGAAAATCCTCA
CAACACTTTGGGGAGGTTTTGGGCGTCGTTTGAACTGGTCCTTAGATGTC
GCGTGGTGTTGCTAGCTACCAATGGGGCCATGGCATGGTAATAAAGCGAC
GCATTTTGCTTGCCAGTTGCGCCTTGGGAATGAACGAGTAGCCGACTCCG
GTGCAAGAGCGATTATTCCTTGTCGAGTCGCCATCCTTTGCGGAAATGCG
GAGATTCAAGATTGTGGGCTGTTCACCGTGTGCCACCGGCTGACTTTCGA
TAGGTTCAGCTGCGGTGGTGCGAGCGATCGAACTGCCAGGCACACGAGTT
CTGCTTTTAAAACTAAACGGCACGATATGATGACACCTTAAATCATACGG
TATGGCAATACGGAGATGCCCGGCTAACACAAGTCCTTCTGTTCCTTCCT
GCAATCCCAGGTGGAGATGTTTTTCGGGGGGCCAGATGTTCCTATTGAGT
TGGCGGTCGGCGTTTGCGTCGTAACGTTTTTGACGTTCGGAAACGCACAG
CGACGAATATCGCGGGTGCTAGAGGGACTTCAGGATGCCAAGGACCTATG
AGGACGGTCAGGAGAGTGGAGATGTTATGTAGTCGATTTTTCGATGCTTT
TGTTAAATAAATTGGGGGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11481:2372..5144-

>mRNA_S-dermatodea_contig11481.963.1 ID=mRNA_S-dermatodea_contig11481.963.1|Name=mRNA_S-dermatodea_contig11481.963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig11481:2372..5144- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCTGCTTGTGGTGCACTTCACTTGTGTCGCTGGTGCCCTTGTGGCG
TGTGAGCGGCTTCGGGGTGAACTCGCTACCAGCAGCAGGTGTTAGATTGG
CAACGTACGCGCCTGAGGTAGCGTACGACGCACGCAGAAGGCGCAGGGCA
CAGTGTCGAGCTTGGCACGGACCGATTGTGCGGGAGGCGAGACCAACATT
CGTGGGGGCCAGGCAGATGCGCTGCTTGTGGTGCACTTCACTTGTGTCGC
TGGTGCCCTTGTGGCGTGTGAGCGGCTTCGGGGTGAACTCGCTACCAGCA
GCAGGTGTTAGATTGGCAACGTACGCGCCTGAGGTAGCGTACGACGCACG
CAGAAGGCGCAGGGCACAGTGTCGAGCTTGGCACGGACCGATTGTGCGGG
AGGCGAGACCAACATTCGTGGGGGCCAGGCAGGCGGTCAACAGCGGAATT
CCCGACCTGGAGGCGGAGATCGTGTCCGATTCCACTGCCGAACGAGACTT
GAACCTCGCTGCCGGGATGGAAACCGCGCTTGACTTGGTGGGCGGCAGCA
CCCAGTGGGTCGTGGCTGGCGCGGTGGGCGCGACGCTGGTGACGAGAGCG
GATGTGGAGACGTTGGTGTGGGTGCTGGGGTCGTTGTTAAACGCGGTGCT
CTCGAAAGTATTGAAGAAGGGGATCAACCAGGCGGTCAACAGCGGAATTC
CCGACCTGGAGGCGGAGATCGTGTCCGATTCCACTGCCGAACGAGACTTG
AACCTCGCTGCCGGGATGGAAACCGCGCTTGACTTGGTGGGCGGCAGCAC
CCAGTGGGTCGTGGCTGGCGCGGTGGGCGCGACGCTGGTGACGAGAGCGG
ATGTGGAGACGTTGGTGTGGGTGCTGGGGTCGTTGTTAAACGCGGTGCTC
TCGAAAGTATTGAAGAAGGGGATCAACCAGGTCCGACCTGACGGTGCGCA
GCTGACAGACCCCGGGATGCCTAGCTCGCATGCCATGGTCCGACCTGACG
GTGCGCAGCTGACAGACCCCGGGATGCCTAGCTCGCATGCCATGTCTTTG
TTTTTTCTCGGGACCTACCTGGCTATCGGGCTGGAGGAGCACGGGATAGC
AGGCTCGCCGATCTCCCAATTACCACTTGATGTGTTCGAGGCCCAGGCGT
TATTGGCTGTTTACGCTGTTACCGCCAGTCTTTGTTTTTTCTCGGGACCT
ACCTGGCTATCGGGCTGGAGGAGCACGGGATAGCAGGCTCGCCGATCTCC
CAATTACCACTTGATGTGTTCGAGGCCCAGGCGTTATTGGCTGTTTACGC
TGTTACCGCCAGCCTCTGGAGGGTAAAAGCGGGGTTTCACACGCTGCCGC
AGGTATCGGTGGGTGCTGTTGTCGGAGCGCTCGACGCCTTCTTGTGGTAC
CGGTTTAGCGAGGTTTACTTCACGTCTCAGCCTCTGGAGGGTAAAAGCGG
GGTTTCACACGCTGCCGCAGGTATCGGTGGGTGCTGTTGTCGGAGCGCTC
GACGCCTTCTTGTGGTACCGGTTTAGCGAGGTTTACTTCACGTCTCAGGT
GGAGATGTTTTTCGGGGGGCCAGATGTTCCTATTGAGTTGGCGGTCGGCG
TTTGCGTCGTAACGTTTTTGACGTTCGGAAACGCACAGCGACGAATATCG
CGGGTGCTAGAGGGACTTCAGGATGCCAAGGACCTATGAGTGGAGATGTT
TTTCGGGGGGCCAGATGTTCCTATTGAGTTGGCGGTCGGCGTTTGCGTCG
TAACGTTTTTGACGTTCGGAAACGCACAGCGACGAATATCGCGGGTGCTA
GAGGGACTTCAGGATGCCAAGGACCTATGA
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