mRNA_S-dermatodea_contig11479.960.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11479.960.1
Unique NamemRNA_S-dermatodea_contig11479.960.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11479.960.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.650e-21
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 AVARVTEGVDASTRLSDEKRMGRRRAARTPITSASSGRALAPLTPTHLVNNIPRRFATLWVG 186
            AV+RVTEGVDASTRLSDEKRMGRRRAART   S  +GRAL PLTPT LV N+PR+FATLWVG
Sbjct: 1320 AVSRVTEGVDASTRLSDEKRMGRRRAARTAFRSVPTGRALPPLTPTDLVKNVPRKFATLWVG 1381
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BLAST of mRNA_S-dermatodea_contig11479.960.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.750e-20
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 VARVTEGVDASTRLSDEKRMGRRRAARTPITSASSGRALAPLTPTHLVNNIPRRFATLWVG 186
            V+RVTEGVDASTRLSDEKRMGRRRAART   S  +GRAL PLTP  LV NIPR+FATLWVG
Sbjct: 2982 VSRVTEGVDASTRLSDEKRMGRRRAARTAFRSVPTGRALPPLTPIDLVKNIPRKFATLWVG 3042
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11479.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C7_ECTSI1.650e-2180.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU7_9PHAE2.750e-2080.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11479contigS-dermatodea_contig11479:2916..3768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue8.5e-19
Seed eggNOG ortholog2880.D7G2C7
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
EC6.1.1.5
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.9452379-CDS-S-dermatodea_contig11479:2916..31241622924204.9452379-CDS-S-dermatodea_contig11479:2916..3124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 2917..3124 -
1694079090.9984558-CDS-S-dermatodea_contig11479:2916..31241694079090.9984558-CDS-S-dermatodea_contig11479:2916..3124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 2917..3124 -
1622924204.9572718-CDS-S-dermatodea_contig11479:3727..37681622924204.9572718-CDS-S-dermatodea_contig11479:3727..3768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 3728..3768 -
1694079091.0116622-CDS-S-dermatodea_contig11479:3727..37681694079091.0116622-CDS-S-dermatodea_contig11479:3727..3768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11479 3728..3768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11479.960.1prot_S-dermatodea_contig11479.960.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11479 2917..3768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11479.960.1

>prot_S-dermatodea_contig11479.960.1 ID=prot_S-dermatodea_contig11479.960.1|Name=mRNA_S-dermatodea_contig11479.960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
AVARVTEGVDASTRLSDEKRMGRRRAARTPITSASSGRALAPLTPTHLVN
NIPRRFATLWVGAASGHPSAAVPPGDIKGASAS
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mRNA from alignment at S-dermatodea_contig11479:2916..3768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11479.960.1 ID=mRNA_S-dermatodea_contig11479.960.1|Name=mRNA_S-dermatodea_contig11479.960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at S-dermatodea_contig11479:2916..3768- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGTCGCCCGCGTCACGGAGGGCGTCGACGCGTCGACAAGGTGACCTAT
GTGACGGCAGGCGACCGTTGATTGATGTGTCTGTGACGGCGTTCAACAAA
TTATAAGTGTGGGCAGCGCTAAGGACTTGAAGAGCTACACTTCAAGATTG
GGGGAGAGCTGAGTGCGTTGCGCCATTCTCGAACGCTTCAAGTAGGAAGT
GGGAGGTTGTGCATGTTCGTATTGTGCAACAAAAATGCCGTTGTGACGCT
GTAGCAGAACGTACACCCGTGATTTTTACCGTTCTTGTGCTGCTCCAGCA
GCCCTTACCCCCGCAAAACGAGAAGACGCGGTATATCTGAAAGGATATTC
CACGGTAACAGTGAACAACAGCGACGTCTCGGAAGGATCAAGCAAAATAC
TCGCGAACCCTTCCACACCACAAAGCTACTTTAAGACCTGTAACAAAAGC
ACGACCCCGCCTACCTACGGCAGATGGATGTTCCCCTAGGCGAATATACC
GGGTTTACCTTGTGTAGGTGGGTGCTTGCGAAAAGAGAGCACCCCCCCTC
CCCCCCATCCTCCTCCCAAAAATGGTTTCATAAACGTTTTCTTGAGAGCA
CGGTTTTGCGCCCTCCTCCATCCACCCTCCAACACCGCCCTCAGGCTGTC
CGACGAAAAGCGCATGGGCAGACGTCGCGCTGCGAGAACACCCATCACAT
CGGCATCCTCAGGTAGGGCGCTCGCTCCGCTCACGCCCACCCACCTGGTT
AACAACATCCCAAGAAGGTTCGCGACCCTGTGGGTGGGGGCTGCCAGTGG
ACACCCTTCGGCGGCTGTGCCACCCGGCGATATCAAGGGTGCGAGCGCGA
GCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11479:2916..3768-

>mRNA_S-dermatodea_contig11479.960.1 ID=mRNA_S-dermatodea_contig11479.960.1|Name=mRNA_S-dermatodea_contig11479.960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig11479:2916..3768- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGTCGCCCGCGTCACGGAGGGCGTCGACGCGTCGACAAGGCGGTCGCC
CGCGTCACGGAGGGCGTCGACGCGTCGACAAGGCTGTCCGACGAAAAGCG
CATGGGCAGACGTCGCGCTGCGAGAACACCCATCACATCGGCATCCTCAG
GTAGGGCGCTCGCTCCGCTCACGCCCACCCACCTGGTTAACAACATCCCA
AGAAGGTTCGCGACCCTGTGGGTGGGGGCTGCCAGTGGACACCCTTCGGC
GGCTGTGCCACCCGGCGATATCAAGGGTGCGAGCGCGAGCGCTGTCCGAC
GAAAAGCGCATGGGCAGACGTCGCGCTGCGAGAACACCCATCACATCGGC
ATCCTCAGGTAGGGCGCTCGCTCCGCTCACGCCCACCCACCTGGTTAACA
ACATCCCAAGAAGGTTCGCGACCCTGTGGGTGGGGGCTGCCAGTGGACAC
CCTTCGGCGGCTGTGCCACCCGGCGATATCAAGGGTGCGAGCGCGAGC
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