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Homology
BLAST of mRNA_S-dermatodea_contig11475.958.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.360e-52 Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 1
Query: 1 KEVLPPCPFPGHDNVSWACHACGGAKHHLTSRFAMEPLKRAHGFKVHRVPNDGDCFFSSIKAAVEP--VTGGRRKGGAAAAAMAEVEATGITVAKMREWVAEETGEEQLAFYTLQAKANPEERWLDFVRPLDERIPSDIE 414
+E LPPCP+PGH NVSW C ACGGAKHHLTSR AMEPL+RAHGFKVHRVPNDGDCFFSSIKAA+ + G GGAAA A + +TV +MREWVAEE G++QL FY LQA ANPE+RWLDFVRPL +RIPSD E
Sbjct: 251 EEQLPPCPYPGHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGA-----GSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDE 385
BLAST of mRNA_S-dermatodea_contig11475.958.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI) HSP 1 Score: 155 bits (393), Expect = 3.100e-39 Identity = 164/425 (38.59%), Postives = 196/425 (46.12%), Query Frame = 1
Query: 103 MEPLKRAHGFKVHRVPNDGDCFFSSIKAAVEPVTGGRRKGGAAAAAMAEVEATGITVAKMREWVAEETGEEQLAFYTLQAKANPEERWLDFVRPLDERIPSDIEEEXXXXXXXXNSDTEEPKADFEGKKQEEKSTW-----------------------------------------------------GHTPPKASLKPSARGGSGGDRAGETDRTASTEIAXXXXXXXXXXXXXRSTNSWVPASARRDPAQSDREARRLGRRRNGGKGLAAAAXXTVAATAVPTLSTKNPPARDSG---------------------RSKACAPRRSTRGATHAAEPCADEEXXXXXXXXXXXXRXXXXXXXXXXXGEEDDEGLPVVRSVEELRQFVRLEGSVVGHGSCMWADTFAHHVVSRRLGLTILFIDM 1155
MEPL+RAHGFKVHRVPNDGDCFFSSIKAA+ R G A+ + +TV +MREWVAEE G++QL FY LQA ANPE+RWLDFVRPL +RIPSD E XXXXXXXX + G+ + G P+ KP++R + +A +TD +E A + A A SDR AR L RR G+GL+ XX + KA +PRR XXXXXXXXXXXX EE++EGLPVV +VEELR+FVRLEGS VGHG+CMWADT AHHVVSRRL +TILF+DM
Sbjct: 1 MEPLQRAHGFKVHRVPNDGDCFFSSIKAALPDGVAAERARGGXXXXAADCAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVRPLVDRIPSDDEXXXXXXXXXXXXXXX---XSYRGETEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSGQPEGK-KPTSRRTA---KADDTDAPEDSECAT------------------LAAVVSPPSASSDRNARYL--RRREGRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKATSPRR----VGEEGSGXXXXXXXXXXXXXXXXXETEAVGWRWENEVEEENEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDM 394
BLAST of mRNA_S-dermatodea_contig11475.958.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA) HSP 1 Score: 103 bits (257), Expect = 3.270e-21 Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 22 PFPGHDNVSWACHACGGAKHHLTSRFAMEPLKRAHGFKVHRVPNDGDCFFSSIKAAVEPVTGGRRKGGAAAAAMAEVEATGITVAKMREWVAEETGEEQLAFYTLQAKANPEERWLDFVR 381
P+P H +V W C AC +H LTS+ A+ P ++AHGFKV+ VP DGDCF+SS+ A+ V G R TVA++REWVA EE L FY + A+ANP WLDFVR
Sbjct: 47 PYPCHTDVVWMCEACA-VEHCLTSKQALAPFRKAHGFKVYAVPKDGDCFYSSVCMALASV--GVR----------------ATVAQLREWVAASMTEEHLRFYQVHAEANPSASWLDFVR 147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_004490.1 |
| Exons | 3 |
| Model size | 1179 |
| Cds size | 1179 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11475.958.1 >prot_S-dermatodea_contig11475.958.1 ID=prot_S-dermatodea_contig11475.958.1|Name=mRNA_S-dermatodea_contig11475.958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=393bp
KEVLPPCPFPGHDNVSWACHACGGAKHHLTSRFAMEPLKRAHGFKVHRVP
NDGDCFFSSIKAAVEPVTGGRRKGGAAAAAMAEVEATGITVAKMREWVAE
ETGEEQLAFYTLQAKANPEERWLDFVRPLDERIPSDIEEEEEEEGDEENS
DTEEPKADFEGKKQEEKSTWGHTPPKASLKPSARGGSGGDRAGETDRTAS
TEIARGGSGGTPTSEEKRSTNSWVPASARRDPAQSDREARRLGRRRNGGK
GLAAAAAATVAATAVPTLSTKNPPARDSGRSKACAPRRSTRGATHAAEPC
ADEEGEEEEEEEEDAAREETEEEGEESQGEEDDEGLPVVRSVEELRQFVR
LEGSVVGHGSCMWADTFAHHVVSRRLGLTILFIDMVSVLRRL* back to topmRNA from alignment at S-dermatodea_contig11475:153..3454- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11475.958.1 ID=mRNA_S-dermatodea_contig11475.958.1|Name=mRNA_S-dermatodea_contig11475.958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3302bp|location=Sequence derived from alignment at S-dermatodea_contig11475:153..3454- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAGGTGTTGCCCCCGTGTCCGTTCCCCGGGCATGATAACGTTTCGTG
GGCGTGTCACGCGTGCGGGGGGGCGAAGCACCATCTGACTTCGCGGTTCG
CCATGGAGCCGCTGAAGAGGGCGCACGGTTTTAAGGTAAGGGAGCTCCAC
CGCGTTCATGCGTATTTTGACTTATAGTTATACTGTACCAGGTAGTACAT
ACACGCTTCGAAGCACCAGGTTTTACTATTAACTTCAATATTAGAGCTAC
AACAGTTGTATGATTTTGTAGTCATGATAATATGATATGCTTATCATATC
ATATTAGATGTACGAATTGGGAAGTGCATTTATGTAACGGTTGTCATGTT
GTCATAGGGTTCCTTTTTTTATACAAGAAACATAACACAGAAAGTGCACA
ATCCATATACTGTAGTAACTCATCGGGACAGGACAGGACCCGGGTGGACT
TTGTTGTGCACAAAACCGAGATAATTTCACGGCCGCCCGAAATACTCCAT
AGTAGAACATGGTGCAGGCGACTCCCCAAGTGCAATACTATTAATAGGCT
CAGCAGAACGTACCCCGGCGAACCGTCAGCCATGATTCTGCTATCATACT
AATACCACATTTACTCCAAGGGAACACGTAGATAAGATATTACAGTAGTA
GTATTATCACATGACAAAGAACTTTTGGGATGGGTGGGAGTCGGAAAGTT
CCGGGCGTGGACGCGGACGCACGTCCAATTCGATTTTCTCTCTCGTTTTT
GGAGACGTGGATTGCGTTTGTTTGGTCTGTTCGTACCAACAACGCTTCAC
TTGTGCCGTAGCGTTTTCGAATGTTCCACTAATTTCTGGCGATGTGGACG
TGAGGGAGTGTGTACAGCCCCGTTTGGTTTCTGTTACGTAGCGCAGCAAG
TTCATTCCGGCGATCCTGTGGCTGTAATTTTCAAGGTATGAATAATAAAA
CACGCAGAGCTCTCGCGCAAAAACTTACACCCTGCACCGATATTCCGCAA
TACTTGTAAGCAATACGCGTCCGATCGCCGTTCGCGCATCCCACCCGGCC
TGCCGTACGTTCCGACGGGGGTGCACGACGCGGACGCGTGTAAGACCTCG
GTGTCTTGTTGCTTGTCTTGTATGCTTCCAATCCAGCCGTTCAAGACCCC
AACAGTATCAAGAGCAGTGGCACACCAACCGATGCGCTGTGTCGTTATAT
CCGATGTTAGACCGACGGCCATGTTGCTCACTTGCGAGTAGTCGGCCTTA
TCCGAATCCCGTCTGTGGTCACGGAGGATTATCCCATTTTTTCCCCCGTT
GGTGGCATTGTTTTTTTATCGCGCGTTGGGTTCAGCACTCCCTTAGCTCG
CCGATTGTTGTGATTTTGCCGGCTCAAGCTCTCGCGCTTTTCGCCGCAGA
GGAGATACATATGATGCTTTTTTTAACCCTGCCGGGAATTCAACCCCCGA
CGCCCACCTTACTGGGACGTTGGTTGTCGCCAGCTAACCACTGGCCGAGT
GGCTGCCCGGCGCGCGTGAACATATGCTATACCGATGGGTGAATTATATG
TTGGTAGCGGCATACCGCCGTCGTACAGGCCAACAAAGCAAATTGCCGGG
TGGTCCCTCGAGACAGTCGTCCACGACCAGCCTCGTGCTGTGCCTACCGC
GATGGACGACGGCACACACAGGCGTACTCACTATTAAAGACGCGCCAAAC
AAAGCTACGCACCCCCTCCGTAAAGGCACGTGCTGCCGCAGTGTATACTG
GTGAAGTGAAGGCGAAAAGCAAATGTTTCACCCTCCCAAACACACACAAA
CTTACGCTCGAATCACCCCTCGCGCTCGCATCAGGTGCACAGGGTACCAA
ACGACGGGGATTGTTTTTTCTCGTCAATCAAGGCTGCGGTAGAGCCGGTC
ACCGGAGGGCGCAGGAAGGGAGGGGCAGCGGCAGCGGCGATGGCGGAGGT
GGAGGCGACGGGCATCACGGTGGCCAAGATGCGCGAGTGGGTCGCGGAGG
AGACCGGGGAGGAACAGCTGGCATTTTACACTCTCCAGGCCAAGGCAAAC
CCGGAAGAGCGATGGTGCGTTACAGCAGTGCGTCTGTGCGTGCTGATTCT
CCGCTGGAAAACAGTAGACGACTGCAACTGGCTTGGCATTCGTTTTCGTT
TGGGCGTGTTTCCCGGCGTGGTCCCTCCGTTCGGGTGGGGTGAGTCAGCC
GTTTCCGCCAGGAAGAAACACCGCAACGACTCACCGCGCTGCCACAGGTT
ACCAACATGGCCAGGCGCGGGGCACCAGACCCTTCCTTAAGAGTGAAAAT
ACATCTGTCGCCGTTACCGGATTACGCGAGTTTTGAGTGTTTTTTGTCCG
TGGGTCATCTACGTGTGTGCTGCCGCACTGCTTTGTGACAATACTTTTGT
CTTTGTCGATTCACACGTTCCAGACTTTTTTCCGTTTGCCTCTCGTTTTT
GTCTTGGTCCACTTCATCTACGGACACTACTCTGACAGGCTGGACTTCGT
GCGGCCTCTGGACGAACGGATTCCGAGTGACATCGAGGAAGAAGAAGAGG
AAGAAGGGGACGAAGAGAACAGCGACACGGAAGAGCCGAAAGCGGACTTT
GAGGGGAAGAAGCAGGAGGAGAAAAGCACGTGGGGGCACACTCCGCCGAA
GGCCTCCCTCAAACCCAGCGCGCGTGGTGGCAGTGGCGGGGACAGGGCGG
GGGAAACGGACAGAACGGCCTCGACGGAGATCGCCAGAGGCGGCAGCGGA
GGAACGCCGACGTCCGAGGAGAAACGGTCGACTAACTCCTGGGTGCCGGC
GAGTGCCCGACGGGATCCGGCGCAAAGTGATCGAGAGGCCCGACGTCTCG
GAAGACGTCGCAACGGAGGAAAGGGGTTAGCGGCGGCAGCGGCAGCGACG
GTGGCAGCGACGGCCGTACCGACACTGTCGACGAAGAACCCGCCTGCGCG
AGATAGTGGGAGGAGCAAGGCTTGTGCGCCGCGAAGGAGCACTAGAGGAG
CGACCCACGCCGCGGAACCGTGTGCAGATGAGGAGGGGGAGGAGGAGGAG
GAGGAAGAAGAGGACGCGGCCCGTGAGGAAACTGAGGAGGAGGGGGAGGA
GTCCCAAGGGGAAGAGGACGACGAAGGACTTCCGGTAGTGCGGTCCGTCG
AGGAGCTTCGTCAGTTCGTGCGGCTCGAAGGGTCGGTTGTTGGGCACGGG
AGTTGCATGTGGGCGGACACTTTCGCGCACCACGTGGTGTCGCGTCGATT
AGGGCTCACTATCCTCTTCATTGATATGGTGAGCGTGCTGCGTCGCCTCT
GA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11475:153..3454- >mRNA_S-dermatodea_contig11475.958.1 ID=mRNA_S-dermatodea_contig11475.958.1|Name=mRNA_S-dermatodea_contig11475.958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at S-dermatodea_contig11475:153..3454- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGAGGTGTTGCCCCCGTGTCCGTTCCCCGGGCATGATAACGTTTCGTG
GGCGTGTCACGCGTGCGGGGGGGCGAAGCACCATCTGACTTCGCGGTTCG
CCATGGAGCCGCTGAAGAGGGCGCACGGTTTTAAGAAGGAGGTGTTGCCC
CCGTGTCCGTTCCCCGGGCATGATAACGTTTCGTGGGCGTGTCACGCGTG
CGGGGGGGCGAAGCACCATCTGACTTCGCGGTTCGCCATGGAGCCGCTGA
AGAGGGCGCACGGTTTTAAGGTGCACAGGGTACCAAACGACGGGGATTGT
TTTTTCTCGTCAATCAAGGCTGCGGTAGAGCCGGTCACCGGAGGGCGCAG
GAAGGGAGGGGCAGCGGCAGCGGCGATGGCGGAGGTGGAGGCGACGGGCA
TCACGGTGGCCAAGATGCGCGAGTGGGTCGCGGAGGAGACCGGGGAGGAA
CAGCTGGCATTTTACACTCTCCAGGCCAAGGCAAACCCGGAAGAGCGATG
GTGCACAGGGTACCAAACGACGGGGATTGTTTTTTCTCGTCAATCAAGGC
TGCGGTAGAGCCGGTCACCGGAGGGCGCAGGAAGGGAGGGGCAGCGGCAG
CGGCGATGGCGGAGGTGGAGGCGACGGGCATCACGGTGGCCAAGATGCGC
GAGTGGGTCGCGGAGGAGACCGGGGAGGAACAGCTGGCATTTTACACTCT
CCAGGCCAAGGCAAACCCGGAAGAGCGATGGCTGGACTTCGTGCGGCCTC
TGGACGAACGGATTCCGAGTGACATCGAGGAAGAAGAAGAGGAAGAAGGG
GACGAAGAGAACAGCGACACGGAAGAGCCGAAAGCGGACTTTGAGGGGAA
GAAGCAGGAGGAGAAAAGCACGTGGGGGCACACTCCGCCGAAGGCCTCCC
TCAAACCCAGCGCGCGTGGTGGCAGTGGCGGGGACAGGGCGGGGGAAACG
GACAGAACGGCCTCGACGGAGATCGCCAGAGGCGGCAGCGGAGGAACGCC
GACGTCCGAGGAGAAACGGTCGACTAACTCCTGGGTGCCGGCGAGTGCCC
GACGGGATCCGGCGCAAAGTGATCGAGAGGCCCGACGTCTCGGAAGACGT
CGCAACGGAGGAAAGGGGTTAGCGGCGGCAGCGGCAGCGACGGTGGCAGC
GACGGCCGTACCGACACTGTCGACGAAGAACCCGCCTGCGCGAGATAGTG
GGAGGAGCAAGGCTTGTGCGCCGCGAAGGAGCACTAGAGGAGCGACCCAC
GCCGCGGAACCGTGTGCAGATGAGGAGGGGGAGGAGGAGGAGGAGGAAGA
AGAGGACGCGGCCCGTGAGGAAACTGAGGAGGAGGGGGAGGAGTCCCAAG
GGGAAGAGGACGACGAAGGACTTCCGGTAGTGCGGTCCGTCGAGGAGCTT
CGTCAGTTCGTGCGGCTCGAAGGGTCGGTTGTTGGGCACGGGAGTTGCAT
GTGGGCGGACACTTTCGCGCACCACGTGGTGTCGCGTCGATTAGGGCTCA
CTATCCTCTTCATTGATATGGTGAGCGTGCTGCGTCGCCTCTGAGCTGGA
CTTCGTGCGGCCTCTGGACGAACGGATTCCGAGTGACATCGAGGAAGAAG
AAGAGGAAGAAGGGGACGAAGAGAACAGCGACACGGAAGAGCCGAAAGCG
GACTTTGAGGGGAAGAAGCAGGAGGAGAAAAGCACGTGGGGGCACACTCC
GCCGAAGGCCTCCCTCAAACCCAGCGCGCGTGGTGGCAGTGGCGGGGACA
GGGCGGGGGAAACGGACAGAACGGCCTCGACGGAGATCGCCAGAGGCGGC
AGCGGAGGAACGCCGACGTCCGAGGAGAAACGGTCGACTAACTCCTGGGT
GCCGGCGAGTGCCCGACGGGATCCGGCGCAAAGTGATCGAGAGGCCCGAC
GTCTCGGAAGACGTCGCAACGGAGGAAAGGGGTTAGCGGCGGCAGCGGCA
GCGACGGTGGCAGCGACGGCCGTACCGACACTGTCGACGAAGAACCCGCC
TGCGCGAGATAGTGGGAGGAGCAAGGCTTGTGCGCCGCGAAGGAGCACTA
GAGGAGCGACCCACGCCGCGGAACCGTGTGCAGATGAGGAGGGGGAGGAG
GAGGAGGAGGAAGAAGAGGACGCGGCCCGTGAGGAAACTGAGGAGGAGGG
GGAGGAGTCCCAAGGGGAAGAGGACGACGAAGGACTTCCGGTAGTGCGGT
CCGTCGAGGAGCTTCGTCAGTTCGTGCGGCTCGAAGGGTCGGTTGTTGGG
CACGGGAGTTGCATGTGGGCGGACACTTTCGCGCACCACGTGGTGTCGCG
TCGATTAGGGCTCACTATCCTCTTCATTGATATGGTGAGCGTGCTGCGTC
GCCTCTGA back to top
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