mRNA_S-dermatodea_contig11474.957.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11474.957.1
Unique NamemRNA_S-dermatodea_contig11474.957.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: D7G9C6_ECTSI (Homologue of a Golgi anti-apoptotic protein identified from vaccinia virus. Transmembrane BAX inhi n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9C6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-21
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GFIRKVYGILS+QL+LTA VA+VCVLND VRTGIL N+WTVW+GFF SIGLL+ L+
Sbjct:   68 RLGFIRKVYGILSIQLLLTAAVAAVCVLNDNVRTGILGNLWTVWVGFFFSIGLLLCLM 125
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: E2AAC3_CAMFO (Transmembrane BAX inhibitor motif-containing protein 4 n=3 Tax=Formicinae TaxID=7479 RepID=E2AAC3_CAMFO)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-11
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GF+RKVYG+LS+QL++T VVASV V++ TV+  +  N WT+ L FFL++G+LI LL
Sbjct:   43 RMGFLRKVYGLLSIQLLMTVVVASVFVMSSTVKLYVQDNPWTIGLAFFLTMGILIGLL 100
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: UPI000623775F (protein lifeguard 4-like n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI000623775F)

HSP 1 Score: 65.1 bits (157), Expect = 3.870e-11
Identity = 31/58 (53.45%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GF+RKVYG+LS+QL++T VVA+V V++ TV+  +  N WT+ L FF+++G+LIAL+
Sbjct:   43 RMGFLRKVYGLLSIQLLMTVVVAAVFVMSSTVKLYVQQNPWTIGLAFFMTMGILIALM 100
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: A0A6I9X3R4_9HYME (protein lifeguard 4-like n=8 Tax=Myrmicinae TaxID=34695 RepID=A0A6I9X3R4_9HYME)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-10
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GF+RKVYG+LS+QL++T  +ASV V++ TV+  +  NVWT+ L FFL++ +LIAL+
Sbjct:   43 RMGFLRKVYGLLSIQLLMTVALASVFVISSTVKLYVQNNVWTIGLAFFLTMAILIALM 100
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: A0A0J7L9Q9_LASNI (Fanconi anemia group i protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7L9Q9_LASNI)

HSP 1 Score: 64.7 bits (156), Expect = 1.090e-10
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GF+RKVYG+LS+QL++T VVASV V++ TV+  +  N WT+ + FFL++G+LI LL
Sbjct: 1207 RMGFLRKVYGLLSIQLLMTVVVASVFVMSSTVKLYVQDNPWTIGVAFFLTMGILIGLL 1264
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: C1C1L9_CALCM (Transmembrane BAX inhibitor motif-containing protein 4 n=4 Tax=Caligidae TaxID=72034 RepID=C1C1L9_CALCM)

HSP 1 Score: 63.5 bits (153), Expect = 1.410e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIAL 171
            R GF+RKVYG+L VQL+LT ++A VC+    V+T + AN W V + F LSIG+L+AL
Sbjct:   41 RMGFLRKVYGLLVVQLVLTTLIAGVCLFTPAVKTAVQANSWLVMVAFILSIGILLAL 97
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: C1BNU8_CALRO (Transmembrane BAX inhibitor motif-containing protein 4 n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=C1BNU8_CALRO)

HSP 1 Score: 62.8 bits (151), Expect = 2.760e-10
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIAL 171
            R GF+RKVYG+L+VQL+LT ++A VC+    V+T +  N W V + F LSIG+LIAL
Sbjct:   42 RMGFLRKVYGLLAVQLILTTLIAGVCLFTPAVKTAVQQNSWLVIVAFILSIGILIAL 98
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: F0YSS4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YSS4_AURAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.450e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GFIRKVYGIL+VQL LTA VAS   L D+ R  +L     +W+G F S+G+L+AL+
Sbjct:   10 RLGFIRKVYGILTVQLALTAAVASALTLVDSARDFVLGTPSLLWVGMFASVGVLVALM 67
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BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: A0A1Y1NFK2_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NFK2_PHOPY)

HSP 1 Score: 62.4 bits (150), Expect = 3.910e-10
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIAL 171
            R  FIRKVYG+LS+QL+LT +VAS+C+    V+  I AN W + + FF SIGLLIAL
Sbjct:   42 RMAFIRKVYGLLSIQLLLTVIVASICLFTPPVKEFIHANDWLLMIAFFGSIGLLIAL 98
[Close]
BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Match: F0Y0L6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0L6_AURAN)

HSP 1 Score: 59.3 bits (142), Expect = 8.700e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLSIGLLIALL 174
            R GFIRKVYGIL+VQL LTA VAS   L D+ R  +L     +W+G F S+G+L+AL+
Sbjct:   60 RLGFIRKVYGILTVQLALTAAVASALTLVDSARDFVLGTPSLLWVGMFASVGVLVALM 117
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11474.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9C6_ECTSI2.570e-2177.59Homologue of a Golgi anti-apoptotic protein identi... [more]
E2AAC3_CAMFO2.010e-1156.90Transmembrane BAX inhibitor motif-containing prote... [more]
UPI000623775F3.870e-1153.45protein lifeguard 4-like n=1 Tax=Linepithema humil... [more]
A0A6I9X3R4_9HYME1.040e-1053.45protein lifeguard 4-like n=8 Tax=Myrmicinae TaxID=... [more]
A0A0J7L9Q9_LASNI1.090e-1055.17Fanconi anemia group i protein n=1 Tax=Lasius nige... [more]
C1C1L9_CALCM1.410e-1054.39Transmembrane BAX inhibitor motif-containing prote... [more]
C1BNU8_CALRO2.760e-1054.39Transmembrane BAX inhibitor motif-containing prote... [more]
F0YSS4_AURAN3.450e-1055.17Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1Y1NFK2_PHOPY3.910e-1057.89Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
F0Y0L6_AURAN8.700e-1055.17Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11474contigS-dermatodea_contig11474:6143..6322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.8e-17
Seed eggNOG ortholog2880.D7G9C6
Preferred nameTMBIM4
KEGG koko:K06890
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050848,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0098588,GO:0098791,GO:0098827,GO:1902531
EggNOG free text desc.negative regulation of Fas signaling pathway
EggNOG OGsCOG0670@1,KOG2322@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionBax inhibitor 1-related
Ec32 orthologEc-03_004480.1
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.7732303-CDS-S-dermatodea_contig11474:6142..63221622924204.7732303-CDS-S-dermatodea_contig11474:6142..6322Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11474 6143..6322 +
1694079090.8939478-CDS-S-dermatodea_contig11474:6142..63221694079090.8939478-CDS-S-dermatodea_contig11474:6142..6322Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11474 6143..6322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11474.957.1prot_S-dermatodea_contig11474.957.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11474 6143..6322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11474.957.1

>prot_S-dermatodea_contig11474.957.1 ID=prot_S-dermatodea_contig11474.957.1|Name=mRNA_S-dermatodea_contig11474.957.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=60bp
RAGFIRKVYGILSVQLMLTAVVASVCVLNDTVRTGILANVWTVWLGFFLS
IGLLIALLW*
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mRNA from alignment at S-dermatodea_contig11474:6143..6322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11474.957.1 ID=mRNA_S-dermatodea_contig11474.957.1|Name=mRNA_S-dermatodea_contig11474.957.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at S-dermatodea_contig11474:6143..6322+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCAGGGTTCATCCGCAAGGTCTACGGCATCCTTTCCGTCCAGCTAAT
GCTCACCGCGGTGGTAGCGTCCGTGTGCGTCTTGAACGACACCGTGCGAA
CCGGCATCCTGGCGAACGTTTGGACGGTGTGGCTAGGCTTCTTCCTGTCC
ATCGGTCTCCTCATCGCCCTGCTATGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11474:6143..6322+

>mRNA_S-dermatodea_contig11474.957.1 ID=mRNA_S-dermatodea_contig11474.957.1|Name=mRNA_S-dermatodea_contig11474.957.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig11474:6143..6322+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGCAGGGTTCATCCGCAAGGTCTACGGCATCCTTTCCGTCCAGCTAAT
GCTCACCGCGGTGGTAGCGTCCGTGTGCGTCTTGAACGACACCGTGCGAA
CCGGCATCCTGGCGAACGTTTGGACGGTGTGGCTAGGCTTCTTCCTGTCC
ATCGGTCTCCTCATCGCCCTGCTATGGTGACGTGCAGGGTTCATCCGCAA
GGTCTACGGCATCCTTTCCGTCCAGCTAATGCTCACCGCGGTGGTAGCGT
CCGTGTGCGTCTTGAACGACACCGTGCGAACCGGCATCCTGGCGAACGTT
TGGACGGTGTGGCTAGGCTTCTTCCTGTCCATCGGTCTCCTCATCGCCCT
GCTATGGTGA
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