mRNA_S-dermatodea_contig11465.951.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11465.951.1
Unique NamemRNA_S-dermatodea_contig11465.951.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11465.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11465contigS-dermatodea_contig11465:1329..5513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.4086099-CDS-S-dermatodea_contig11465:1328..14261622924204.4086099-CDS-S-dermatodea_contig11465:1328..1426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11465 1329..1426 -
1694079090.608112-CDS-S-dermatodea_contig11465:1328..14261694079090.608112-CDS-S-dermatodea_contig11465:1328..1426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11465 1329..1426 -
1622924204.4203439-CDS-S-dermatodea_contig11465:5308..55131622924204.4203439-CDS-S-dermatodea_contig11465:5308..5513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11465 5309..5513 -
1694079090.625053-CDS-S-dermatodea_contig11465:5308..55131694079090.625053-CDS-S-dermatodea_contig11465:5308..5513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11465 5309..5513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11465.951.1prot_S-dermatodea_contig11465.951.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11465 1329..5513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11465.951.1

>prot_S-dermatodea_contig11465.951.1 ID=prot_S-dermatodea_contig11465.951.1|Name=mRNA_S-dermatodea_contig11465.951.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
SVVYQISCSFWRQNRAGDRHCYRTGCESRSGGIVVMARTRRESLNLLLAA
VLHAVVTSTAIRANPAANDRVAFAYSSPFRSRFPYTTAVPAHASSAPAQS
R
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mRNA from alignment at S-dermatodea_contig11465:1329..5513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11465.951.1 ID=mRNA_S-dermatodea_contig11465.951.1|Name=mRNA_S-dermatodea_contig11465.951.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4185bp|location=Sequence derived from alignment at S-dermatodea_contig11465:1329..5513- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGTTGTATATCAGATATCGTGTTCGTTCTGGAGGCAAAACAGAGCAGG
AGATCGCCACTGCTATCGTACTGGCTGCGAATCTCGCTCTGGAGGAATAG
TGGTCATGGCGCGGACCCGTCGGGAATCTCTGAATCTGCTGCTCGCGGCC
GTTCTCCATGCAGTGGTGACTTCCACGGCGATTAGAGCTAACCCGGCAGC
AAATGGTAAGACCTATTTTCTACAATATTTTCTATATTCAATTGTATATG
TTTTCGATTTTTACTCCAGCCCGCTGTCTGTTTAAGCCCGCTGTGTGGTA
CGAGCCTGCCGCTAGACCCCATGGGGTCTCTTGAGGAGTGTGCGGAGCTC
TGCTTCTCCGGTCGGGCTGTCTTCGGAACTGTGACTATTTATTATATTAG
CAAGTACATACTGGTACACATCGTCGCAGCGCATCCCAAAAAAAATACAA
TACTTGTACTACTACAGTTGTCTGCAAAAGTCACACGACACAACTGGGTC
AACGATCCGCTCACAAACACTGACAATAACATAATGTCTATTATATCATA
CTTGAGAGTATGAATACAAGTATTCATATCACACTCTGTAAGTGGTGTGT
TGGATGTTCTTTCGGCAGAGTTTCATCAATGTCGGCCACAGACTCCCGCG
TCTCCAGCTTTGATATGTCTGGTTCGCTCTTTGCTTGTTGTGGAGCGGCG
ATGGTCGTCTCGTTGGTATGGCGTGTGATAGCTTAGCAAAGAGCTAGTAT
AGCATAGAAGCATGTATGATAGCGAAGGTGTATCGGGAGTTTCATGTACA
CAAGCAGTACGCAGCAGTATGATTGAAGACCCAAGTCTGAAGTATGCCAT
GTACAATTTCAAGTCGGAGTCAGTCAGCTGTCAGTACGTACTACTCTGGC
TGTGCATCACAATTCATACTCCTGAAGTGTTTTGGACTTTTGGATGACGT
GGGCTCTCACTTCCTCGGTTTGTCACCAGGGGACACTATTAATTATGTAC
TCTGGACGGATGTATGATACAAACCCTAGACACAGCAGCAGTGCATATTA
CACTGGCCATGATACAGCATACAGCAGAGTCTGTACAGTCAAAGCGCTCT
GATACGCCAGCTTTTGGCGGATATCATACTCTGTGTACAAGTACAGCCAG
TATCCTTAGGGTTTTAGAGAGTCACATTTTCCAAGTGAGACGTCCCATTT
CAACTGAAGCCCAACGACCGCGGCGGCCGTGATCGGCCGGAGTCGGCCGG
AGTCGGCCTCGGCCGCGGTCGGCCACGGTCGACCAGCATATAGTTCTGCC
AACGCACACCCCTCACGGGCGTGCCGTGGCTACCTACTAGTTAATATAAT
ACAAGAGTGAACCATTTTTTAATAGGGTTTTCATAGCGATTTAGAGAGTC
CCATTTTCCAAGTGAGACGTCCCATTTCAACTCAAGCCCAACGACCGCGG
CGGCCGTGGTCGGCCGGAGTCGGCCGCGGTCGGCCACGGTCGACCGGCAT
ATCGTTCTGCCAACACACACACCTCACGGGCGTAGCCGTGGCTACCTCCT
AGTATGTATTAATAGTGTAGTCAGTACAGCAGTATTCATATTAATGGTTT
ACAACTACAGCTGTAGGTTCCGGGAGACCGCTTGAACTGACTTGTTCAAG
CTGCCCTGCAAAAGCAGGCATCACGTGGTGGGGCTGGCCGACTGAAGCGC
GACCCGGCCGAAACCGAAACAAAGCGTCTTGGGTACAGTACACAGACAGA
CAGTATTATAGTACGCAACTACTGTACTTTGTGTACACAGCAGTACAAGT
TGCACGAGCGTCATTTCATGACGTCATAAGCATGCTAGCTTTATGACAGA
TCCTTGTAAAAAAGTAAAAACAAACAACTAGTTAGTAGACCTCTACAAGT
ACAGTATACAATATGATACTGTAGTAGTACAAGTACTTTGTCATCGCTCT
GTGTGCTCGTATTAATAATATATACGGAAATTCCATTTTACATGTTCAGC
AGTAAAGCCTCTGTTTAGTATTTAGCGTTAGCTCTTCCTTCACGAGTTTC
TCACACACAGGAGGAGTCGCATGGCCCGCGTGAGCGCCTGGTGTGCAGGG
CGAGGGATCGCTGTCGCGATGAGCAGAATTTCCTATCGACGCATCGGCCT
TCGTGTCGTTGTTGTGCACAAACATCACCTTTCTCGGTCTCTCCCTCGGT
CCGTCGGTGGGTCTTCGCTTCCTCGCGAGGGCGAACCATGCGCCGCCTCT
TCGTGTGCCCTACTGCTGTACCTGGTACTTGTTAATGCATGGCGTGGCGA
TCGAGCACGCCGTCTCGCCCGCGACACCGCGGTCTGTTTTCGGCACGACA
ATATTACTTGTTGTGTTGGTTTTCCAGTACTAGCAGCAGTAGGCTCTATG
GGCACTGTAAACAAGTTACTATTCGAATGCCTCCAGGGACGTGGTAATGA
AAAGACACTGATAGTAGTATTAGTATTAATAGTAGCCAGGTAATTCGGAA
GAAGAGAGTCCAAATATTGAATCTGATTGGTCAACCGTCTGAAGGACAGG
AGACCAACGCCAGCAGGCAGAGCAGTCCTGTGCGAGCTCGCTCTGATCCT
GCCCGGCTAGCCAGGCAGCGAGCGCGTTGAACGCAGATAGCGCAGCCTGG
ATATATATCGATTCATGGCTTGCGTTGGCGGCGAATGCCGCGCGGGACCA
GGAGGACGCGGCTGGGAATCCTGAAAACGATGATCGGAGCGGAATGATGA
GATGGAAGGGCGGCACGAAAGGAGACCATCGCAGTGCAGGCAGCCGAAGC
AGCGCTACAAGAGCTTAGCTTTAACTGTTCTTGGCAAGCAACCCATACAA
CGCGACCCAAGGATACTACGATAGGTGTAGATGATGGCAATACACCAGTC
CCGGGTCAACAGAACGTCATCACGACAAATCTACGTAGATATGCACTATC
CAGAAACGGAAGGGTCGTCATCTCACAATACACAATACACTACCAATTGG
CCCAAGGGTAGACTTATATAATACGCACTACCTGGTACACAGCTGTGCGC
AGAAGCAGCGTATCCTAGAAAGAAGAACGCCAGGCAACACCATCGTACAT
TACACTACTGTAGCCCACCCTGATAGTCCGTCAAAGTGCAGTTTACCTAA
ACGAATTACGGATTATCATATGATACATGCTTGTATTGTACAATTGGATT
TCCAAATCTTAATAATTCATCCGTTCACCACCCGCCAGCTTCGCTAGCAT
CACGCACCTGGGTGACCGCGGGTCGTTTGTACGTTTGGCAAATCTCACCC
ATAGTAGGCTTGCGCGTGCTCACGGTCGTCGCGATACTTTCACACTTCGT
CTTCTCATGGACGTCTCGGTAAGGCATGACGTGGTTCGTTTTCTTGCTGC
GAAGGGGCCTGGTAGTGCGCGACAGCATCCTGTGGTGGGTGGTGCGCAGC
TTACTTATCGTGGTAGGGCTCGTACCAGTACCACCGGATGGCAGCATCTT
GGACCGCTGTCAGACCACGAGGTCGTCATGTTGGGCAGCTTTACGTCGGC
TTCTCGCATCTACAATTTTGTGTTGTTCGGAATTTCGTATCAGTTCACAC
AAGGATACAAGTTATTTATGTGTTCCCCCGGTGCTTGCTTTCGAAATTTA
TCGCGCACCGAGTTCTTCATTTACGCGGACCGCCCTTTCACCTATTATAC
TACGGTTCCTGCGGTAGACCTACAAACAGTACTTCAACCCGGGGTAACGC
CCATGACCGTTTCACACCCCGTTTGCCAGCATCTATGATACTCTCTCACC
ACAAGCATCCAGCGGTAGACCTCGTGTCCACCTACGCGTACGCTCCGTCA
CCCCCGCTCATATCCCCCATCTTCGCGAAAACTATCACACATGCCACAAA
CCGCGCGCTCACCCTTGACCCCGGGTACCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCACCCCTCTCCCCCCCCTCCCCCAAACCTCACACCCCGGCCC
CACCCCGCCCGCCCCCCCTTCCCCCCCGCTCCCCCCCCCCCCCCCCCCAC
CCCCCAATCCCCCCATCCTCGACTCCTTCCCGCGCAGATCGTGTCGCCTT
CGCGTACTCGTCCCCGTTTCGTTCGCGATTCCCGTACACGACCGCGGTGC
CCGCGCACGCGTCGAGCGCGCCGGCTCAATCACGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11465:1329..5513-

>mRNA_S-dermatodea_contig11465.951.1 ID=mRNA_S-dermatodea_contig11465.951.1|Name=mRNA_S-dermatodea_contig11465.951.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig11465:1329..5513- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTGTTGTATATCAGATATCGTGTTCGTTCTGGAGGCAAAACAGAGCAGG
AGATCGCCACTGCTATCGTACTGGCTGCGAATCTCGCTCTGGAGGAATAG
TGGTCATGGCGCGGACCCGTCGGGAATCTCTGAATCTGCTGCTCGCGGCC
GTTCTCCATGCAGTGGTGACTTCCACGGCGATTAGAGCTAACCCGGCAGC
AAATGTCTGTTGTATATCAGATATCGTGTTCGTTCTGGAGGCAAAACAGA
GCAGGAGATCGCCACTGCTATCGTACTGGCTGCGAATCTCGCTCTGGAGG
AATAGTGGTCATGGCGCGGACCCGTCGGGAATCTCTGAATCTGCTGCTCG
CGGCCGTTCTCCATGCAGTGGTGACTTCCACGGCGATTAGAGCTAACCCG
GCAGCAAATGATCGTGTCGCCTTCGCGTACTCGTCCCCGTTTCGTTCGCG
ATTCCCGTACACGACCGCGGTGCCCGCGCACGCGTCGAGCGCGCCGGCTC
AATCACGGATCGTGTCGCCTTCGCGTACTCGTCCCCGTTTCGTTCGCGAT
TCCCGTACACGACCGCGGTGCCCGCGCACGCGTCGAGCGCGCCGGCTCAA
TCACGG
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