mRNA_S-dermatodea_contig11464.950.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11464.950.1
Unique NamemRNA_S-dermatodea_contig11464.950.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.710e-64
Identity = 106/128 (82.81%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 QGDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQEAAV 384
            QGDL GVR+ LLPFTA+QVA+SRRAL RLDL+PEGFTKTHMY L KVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRS +LR++ N++CFPGGKVDI  DQHIIQTA+REMGEEIGI E++V
Sbjct:  314 QGDLSGVRKVLLPFTAKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSGNLRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSV 441
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 9.020e-64
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 QGDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQEAAV 384
            QGDL GVRR LLPFTA+QVA+SRRAL RLDL+PEGFTKTHMY L KVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRS ++R++ N++CFPGGKVDI  DQHII+TA+REMGEEIGI E++V
Sbjct:  324 QGDLSGVRRVLLPFTAKQVAESRRALGRLDLEPEGFTKTHMYALRKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSGNMRAYKNDVCFPGGKVDIGQDQHIIETAVREMGEEIGILESSV 451
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7S3MB31_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB31_9STRA)

HSP 1 Score: 119 bits (299), Expect = 8.760e-31
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    4 GDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGI 369
            G+ + ++  L+PF  E V + R     LDL  +GFT+  +  L + L R+PRHV    E+RASV++PLCNV+GVASVLF +RS  +R+H  ++CFPGG +D  VD  IIQT+LREM EE+GI
Sbjct:   39 GETEELKELLVPFLDESVERRRLRHHHLDLS-KGFTRKEIVILQRYLHRMPRHVFHNAERRASVIIPLCNVNGVASVLFERRSMKVRTHKQQVCFPGGMLDEGVDSTIIQTSLREMEEELGI 159
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A4D9DAL0_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAL0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.460e-30
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:    4 GDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQEAAV 384
            G+L+ + R L P+ AE + + RR  R LDL   G T  H+  L K LQR PR +T     RASV++PLCNV+GVASVLF +RS  +RS  N++CFPGG V+ ++D +II+T+LREM EEIG    +V
Sbjct:   95 GNLEQLERVLHPYQAELITRRRRKTRSLDL-AGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNVNGVASVLFERRSPFVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSV 220
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7S0DGZ8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGZ8_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.800e-28
Identity = 57/125 (45.60%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:    1 QGDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQE 375
            +G  + +R+ L PF   ++++ RR  R++ L  +GF   H+Y + K L RLPR +    E+RASVM+PLCN  GVA VLF  RS+++RSH +++CFPGG VD   D +I++T LRE+ EE+GI +
Sbjct:  147 EGREEELRKVLRPFHTTKISERRRKRRKMFLH-DGFQSEHVYMIRKYLHRLPRQLPRYAEKRASVMLPLCNSQGVACVLFQYRSDNVRSHKSQVCFPGGIVDNRKDSNIVETCLRELEEEMGISQ 270
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7S2USV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USV2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.010e-27
Identity = 56/126 (44.44%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    7 DLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQEAAV 384
            +LD +R+ L PF    + + R   R ++L  EGF   H++ + K L R+PR ++    +RA+V++ LCNVDGV S+LF+KRS+ + SH NE+CFPGG VD   D ++++T LRE+ EEIGI +  V
Sbjct:  148 ELDELRKLLRPFHHSNLERHRTKKRDMNLS-EGFQAKHLHMIRKYLHRMPRQISRSASRRAAVLLTLCNVDGVPSILFSKRSDKVTSHKNEVCFPGGHVD-EQDDNVVETCLREVREEIGIPDTTV 271
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7S3Y7X1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7X1_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 7.320e-27
Identity = 54/120 (45.00%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:   10 LDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGI 369
            +D + + L PF   ++++ R   R++ L  EGF   H+Y + K L R+PR +    E+RASV++PLCN  GVA +LF +RS+++RSH +++CFPGG VD  +D +I++T LREM EE+GI
Sbjct:  155 MDELHKVLRPFHTTKISERRLKRRKMFLH-EGFKSEHIYMIRKYLHRMPRQLPRYAEKRASVILPLCNSQGVACLLFQRRSDTVRSHKSQVCFPGGVVDNRLDANIVETCLREMHEEMGI 273
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A482SUV1_9ARCH (CoA pyrophosphatase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUV1_9ARCH)

HSP 1 Score: 109 bits (272), Expect = 4.170e-26
Identity = 52/123 (42.28%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:    1 QGDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGI 369
            QGD + ++  L PF  + + +SR      DL   GF++  +  +   L R+PR+V   +E+RASV++PLCNV G+ S+LF +RS ++R+H  ++CFPGG V+  VD  +I+T LREM EE+G+
Sbjct:  128 QGDFERLKNLLFPFLKKNIEQSRMRNFSFDLS-NGFSRKALLLIQGYLHRMPRYVYHGSERRASVVIPLCNVQGIPSILFERRSATVRTHKQQVCFPGGMVEYGVDASVIETCLREMEEELGV 249
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7R9ZSG7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSG7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.100e-24
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    7 DLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIG 366
            D++G++ AL  F  + V + R+ +RRLDL     T T +  + K L R+PR VT    +RA V++ +C+V+GV S+LF KR+ SLR+H +EIC PGG      D+ I++T LREMGEEIG
Sbjct:   11 DVEGLKAALDIFHPDLVLQQRKDIRRLDLS-RTLTGTSLEIIRKALMRMPRRVTQAHSKRAGVVLAMCHVNGVPSLLFEKRAASLRAHPDEICLPGGMFCSVEDKTIVETCLREMGEEIG 129
[Close]
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Match: A0A7S2GLJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLJ1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.100e-21
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  130 LLKVLQRLPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGKVDIAVDQHIIQTALREMGEEIGIQE 375
            L K L R+PR VT    QRASV++PLCNV+GV S+LF KR+  LR H  E+CFPGG V    D  I+ T LREM EE+G+ E
Sbjct:    6 LRKALNRMPRQVTKAHRQRASVVLPLCNVNGVPSILFEKRALELRKHPGEVCFPGGMVSEGDDHTIVDTCLREMCEEVGLNE 87
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11464.950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIG8_9PHAE3.710e-6482.81Nudix hydrolase domain-containing protein n=1 Tax=... [more]
D7FSP6_ECTSI9.020e-6482.03Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S3MB31_9STRA8.760e-3150.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9DAL0_9STRA1.460e-3050.39Nudix hydrolase domain-containing protein n=3 Tax=... [more]
A0A7S0DGZ8_9EUKA1.800e-2845.60Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S2USV2_9STRA5.010e-2744.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y7X1_9EUKA7.320e-2745.00Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A482SUV1_9ARCH4.170e-2642.28CoA pyrophosphatase (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7R9ZSG7_9STRA2.100e-2445.83Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2GLJ1_9STRA1.100e-2156.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11464contigS-dermatodea_contig11464:1790..7392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.5
Seed ortholog evalue2.8e-53
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-03_003030.1
Exons3
Model size384
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11464.950.1prot_S-dermatodea_contig11464.950.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11464 1790..7392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.3516777-CDS-S-dermatodea_contig11464:1789..18731622924204.3516777-CDS-S-dermatodea_contig11464:1789..1873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 1790..1873 -
1694079090.5771923-CDS-S-dermatodea_contig11464:1789..18731694079090.5771923-CDS-S-dermatodea_contig11464:1789..1873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 1790..1873 -
1622924204.3599534-CDS-S-dermatodea_contig11464:4585..47001622924204.3599534-CDS-S-dermatodea_contig11464:4585..4700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 4586..4700 -
1694079090.5866456-CDS-S-dermatodea_contig11464:4585..47001694079090.5866456-CDS-S-dermatodea_contig11464:4585..4700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 4586..4700 -
1622924204.3683105-CDS-S-dermatodea_contig11464:7207..73921622924204.3683105-CDS-S-dermatodea_contig11464:7207..7392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 7208..7392 -
1694079090.5969203-CDS-S-dermatodea_contig11464:7207..73921694079090.5969203-CDS-S-dermatodea_contig11464:7207..7392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11464 7208..7392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11464.950.1

>prot_S-dermatodea_contig11464.950.1 ID=prot_S-dermatodea_contig11464.950.1|Name=mRNA_S-dermatodea_contig11464.950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
QGDLDGVRRALLPFTAEQVAKSRRALRRLDLDPEGFTKTHMYTLLKVLQR
LPRHVTTLTEQRASVMVPLCNVDGVASVLFTKRSESLRSHSNEICFPGGK
VDIAVDQHIIQTALREMGEEIGIQEAAV
back to top

mRNA from alignment at S-dermatodea_contig11464:1790..7392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11464.950.1 ID=mRNA_S-dermatodea_contig11464.950.1|Name=mRNA_S-dermatodea_contig11464.950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5603bp|location=Sequence derived from alignment at S-dermatodea_contig11464:1790..7392- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGAGATTTAGATGGGGTGAGGCGTGCGCTTCTCCCGTTCACTGCTGA
ACAGGTGGCCAAGAGTCGGAGGGCGCTGAGGAGGCTAGACCTCGACCCGG
AGGGCTTCACGAAGACCCACATGTACACGCTGCTTAAGGTGCTGCAGAGG
CTTCCGCGGCACGTGACCACGCTCACGGAGCAGAGGTGAGATAGATGCTA
TGTGTTTTTTCGTTTTTAGCTTTTAGTTTTTCGTTTTTAGTTTGAGAAAA
AAGCAAACAAACAAAAAGCCAAGCGCACACTCACACTCGTGCATACACAC
ACACACACGCGCGAAGTTTTGCTGGCGCTTTTCAGGCCAACATACTTGAT
TTTTGGTTTATTATGTCGGGTAGAGCTCTATTAAGAGGTCTATACGTTTT
AGCGCATTTGCTCCTGGTTACTGTGTATCTCGGTAATAGTTCAAGGGGAC
CCCGAAATAGGTTCTGCCTTTACTCTCTCAGCAAGGTATTCCTTAACGGG
GGATATAAAAGGGCACAGGTACTTCGTTTTTTCACTCAGAAAGGTATACG
TGCAAGGGGATAAAAAAGGTACAGGTACTTCCTTTACCCGCTCAGAAAGG
TATACGTGCAGGGGAGGATGTACAAGGTAAAGATACTTCCTTTACTCTCT
CAGTAAGGTACAGGCGCAAGGGGATATTAAAGGTACAGGTAATCCCTTTA
CTCTCTCAGTGTTGTATAGGTGCAAGGGGGGATATTAAAGGTACAGGTAC
TTACTTATTTACTCTCTCAGTAAGGTATAGGTGCAAGGGGGGCTATATAA
GGTACAGGTACTTCCTTTACTCTCTCAGTAAGGTATACGTGTAAGGGGGG
ATATAAAAGGTAAAGGTACCTTCCTTTACCCGCTCAGAAAGGTATACGTG
CAGGGGAGGATGTACAAGGTAAATGTACCTTCCTTTACTCTCTCAGTAAG
GTATAGGCGCAAGGGGATAATAAAGGTACAGGTACTCCCTTTACTCTCTC
AGTAAGGTATAGGTGCAAGGGGGGATATTAAAGGTACAGGTACTTTCTTT
ACGCTCTCAATAAGGTATAGGTGCAAGGGGATATTAAATGTACAGGTAAT
CCATTTACTCTCTCAGTAAGGTATAGGTGCAAGGGGGGATATAAAAGGTA
CAGGTACTTCCTTTACTCTCTCAGTAAGGTATAAGTGCAAGGGGGTCTAT
GTAAGGGACAGGTACTTCCTTTACTCTCTCAGTAAGGTATACGTGTAAGG
GGGGATATATAAGGTACAGGTACTTCCCTTACTCTCTCAGTAAGGTATAG
GCGCAAGGGGATATTAAAGGTACGGGTACATCCTTTACTCTCTCAGTAAG
GTATAGGTGCAAGGGGGGATATTAAACAGGTACTTCCTTTACTCTAAGGT
ATAGGTGAAAGGGGATATTAAAGGTATAGGTACCTCCTTTACTCTCTCAG
TAAGGTATACGTGCAAGGGGGGATACTAAAGACACAGGTGCTTCCTTTTC
TCGCTCAGCTTTTTGTTGTTTTTTTCTTAGCAGGCCCAACTTCCGAGGCA
TGCCTCCTCTGTGTCCGAGAGTAAGTTTTTTTCTCGATCGCTCGGTTTTC
TCAACTGACCACGAGCGGGATCGGCAACCATTAGTGGGCCGGTCGGTTGT
ATGTGTGATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAACTAGTGAGTAGCCACGGCTACGCCCGTGT
GAGTTGTGCGTTCAGTACCCACGGCAGGCGTTCACCCACGGAGGAAGCTG
AGCGTGCAAGAAGGGCCTGGCTGCTGCTGATGTGTGTGTTGAGTGGTGCG
TTTTGTGGGCTGTTTCCATATCAAGCAGAGGGAGGGGCAAAGGAGTCGGT
GATGACAGAAGTAGGAAAGAAATCCACGAAAAATAAGCAAAAAAGGTTTT
AAGTTATACACCAATAAATCATAACCTATCGATATGGGTGCGGCTCCTGA
CAGACAGAGAGAGAGAGGTTGCTTAGCACACGAGAACCGGAGAGGCAGCG
CGTAGCTGGCTGCGCTCCGGTGCGGGCGGCTGTGTGTGTGGCTGCGTGGT
GTTCTGCCTGGCAGTGTGCTGCTGCTTGTGTCGTTGCTGCTTGTATGCAG
TGTGGTGCGTTTTTTGTGCTGTCTCGAGAATATGATATGTATGTACAAGT
ATGTTGTTTGCGTTGGTGGCTGCAGCCCGCGCCGGCGCTGCTGGCTGCTG
CCTTTGGCTGTGCTGCTGACTGTGGCTGGTGGCGCTGCAGGCTGTGCTGC
TGACTGTGGCTTCTGGCCGTGGTGGTGACGGCGGCGGCGGCGGCCGAGCG
CAAAAATCAAACCTTTGGTGCTCAACACAAATATCGCTCAACACAAACAT
CAAAGTTCTTTGGCATCAAAATCCTTCTCTAAATCGCTATAAAAAATCGT
ACAGAAATCAGCATGCCAGGATTTGCTGGACATGTTCCTTCTCTAAATCT
TCATAAAAAAACGGACCTTGTTGTATTCATTAATAAGATAGTAATAGTAG
TGGAGGCTAAGGTCGCTTGTGATGCGATGATTTCATGTCATGTATTATGT
CTTATGGGTATGGTACAAGTATCTTTGTCCTGAGCTTTAGCCCCGCACCC
CCCACCCCCCACCCCCCCTCCCGCCCCCCGCTGCCAAAACAGAGCCTCCG
TCATGGTACCGCTGTGTAACGTTGACGGAGTAGCATCGGTGCTCTTCACC
AAACGTTCTGAGAGCCTGCGGTCTCACAGCAACGAGATCTGCTTCCCTGG
GGGCAAGGTGTGGCCTTTTTTTTCTTTTCTTTTTTTATTGATCAAGTGTG
GCCTTTGTTTTCCTTGTGTGTGTTTTTTTCTTCTTGATACCTTGTCAATG
TGGCGATACTACTTCAGAGAGTGCGCTCTGCGCAAGCAAAGTGGTAATTG
CCGCGTCTTGGATGCCTGTTGCCCCTCGGGATTTGCACATGCTACGACAC
GTCCATTCGCATGACGCGGGGCGGGGCAGCGACATATACAACAACAGTAG
CAGCAGTCCGTCCCATGGCGGTATTAATGTGTTGGTGTATACAAAGTATC
CTTATTAATTAGTACAACAGTGAACCATTTTTAATAGCGATTCGGTGTGG
CTTAGTGTGGACCACAACGGACCACAGCACTAAACTCTTATTCGATTTGA
GGCCGATTTTGTACACTAACCTTCTATACGATTTACATTTTTTTAGCTCC
TACCATGGTATACGATTCGAGGCCGATTTTGTACACGAAACTCGCCGCGG
CCGAGCGCGGCGCCTACGCCTGCCTTGGGTCGCCACACCGTATGTTCCAA
ACCCAACCCGCACATCATCCTGCCAACGCACACCTCACGGGCGACAGCCG
TGGCTTGCAACTAGTATATAATGTATTTGTGTTTTAAAGGAGTGGCAGTC
TGACGCTTATGTTTGTATATCTGGGGTTACACTAGTGCTTCTCTCTTGCG
CTATAGTAAGTACAGTACCAGGGGCGGCATTCTGTGTTGCTAGTGGGTAG
CGACGGCTTCGCCCGTGACGTGTGCGAATGGGCGAACCGGCGAAATATCC
GAAAAATGCTTCAATATTGTCCTCTGTAAGCCCTATCGATTTGGCCTCAA
GAATTCCCCTCTAAAAGCCCTACCATTTTGGCATCAAGGCGCTGCTCTAA
ATTCCAAAATACTGCTCTGTAAGAAAAATGGGGAATTCACGCGAAATACG
TGGCCTCTGCCACAGCACAGCACACAGAGCAGCCTCATCCACACTCCACT
CAGCGGTACAGGGATATCGTGGAGACCATTCTTCGACCGCAGCGTGTCTA
GACGTGTACTTGCAGTGTGTGCCCACACGATAGTGATTCGTGGAGCCCTG
TGGCATCGATGAATCTAAATCCCGGAAGGGTTGCTTGAACTCTCTCGAAT
ACTACAGCAGTCTCTGTGTGTGTGTGTGTGTGCAATATCGCATGTAAACA
ATAACAACAGCCTTGTACCGGCGGCCCATCAGAGGTATCGGCGACGCATC
AGAGGCCCGCCGGACAGTAGCGCTAGCAGTAGCTGTACCCGCGTCGATCC
GCAGGGCGCTGCTCTCCTCAGCGGCTTCGTACCTACCTCCCGAAACCTAC
TCACGCCACTTTCTACGGAAGGCAAAAAAACAAAAAACAACAAGTGCGCT
CAACGCACCACGACCCATAATTACAGCAAGCAAAGTACAGCGTGGACCGA
GAGGAAGGTTCCTAAGCTCATAAAAATATCAAAACTAAGTTTGTAGTTTC
TTTTACAGGGAAATTTCCTGCGTATTTTAGTGGCCAAAGCTGGAAGTCTT
GTGGTCGGAGTTTGGTCGGAATGACCGTGGACGAAATTTCGAGGAAAATT
CTCTCAAACGCGACGCAGCTGCGTTTGAGCGCTACCGCCCTCGGATGAAG
ATTCTGATTGATTTATTGATTGATTGATTTTCACACGTATAAACGACCGG
CCCGCCGCTATTTTTGCAATTGCAAAGTGGGTGCTGATCCCGCTCGTGGT
CACATGAAGGCACAAGAGCAATTGCAATCCAGCACCCCCAAAGACTGTTG
TACAATAGTCTTTGTCCTGAGCGATGCCCTGGTAAGGTGGCTTTGATGTA
CTTTGTGAGCCAACAAGATTAATATCTCCACCACATGCTTTTTTCTTCCC
CTCCCTTAAAAATACCGATTTCAGAAACGTGGAGCGAGCGTTCTCCCCCC
CAAAAAATTACAGATTTCAGAAACATAGAGCCCCCCCCCCCCCTCATCTC
CTCCAACCTTTACTCGTTCTGTTTATTTTGAAAAATAAAATAACTGTAGA
CCTAAGGTGGAGATTGTCGTGTACTATTTATACTGTACACGTGTAAAACG
TGTATTTAATATTCATATTAATAGCGGACAACAGTGTACAGATAGCGAAA
ACATTGTACCCGTGGCTGTACTGCTTTCAAAAATACGCGTGTATTGTATA
GGTACGCGCCCCGTGGTTGAACTGGTTGACCAACAACCCAGTAGCCGGGA
GGACCCGGGTTCAAATCCCGGCAGAGTCGATATTTAGTATTTATTTATTT
TCTCTACCTCCGCCGCGGAAAGCGCGAGAGCGTGAGTAAGCAAAAATCCG
AGAAATCGGCAAGCTGCGGGAGTGCCGAACCCAATGCATTCGCGATGAAA
ATCAAAGGTTAGAACCGGGGATAAGAGAGATGGGATGATCCCTTGTGACC
ACAGACGGAACGCGGAAAAGCAAGTCTATCGTACGTATGCAAAAAAACAA
AAACAGTCCTTGTACATCCCGGATTCAAAAATACACTTGTGGGTAGGCTG
TGTACCTGATTGCAATACCCCTACCCCAAATTTCACGTTATATTACACTC
TTAATAACACTAACACTACAAACTCCATCTTTATAATTGCGTTTGTTTTT
CCACGTTTTTTTTTTCCGCGTCGCGTGGAACGCAACGCAACATGACACAC
GAACGACGACCGGGAGCAGGTAGACATCGCGGTGGACCAGCACATCATCC
AGACGGCGTTGAGGGAGATGGGGGAAGAAATCGGCATCCAAGAGGCTGCG
GTA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11464:1790..7392-

>mRNA_S-dermatodea_contig11464.950.1 ID=mRNA_S-dermatodea_contig11464.950.1|Name=mRNA_S-dermatodea_contig11464.950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig11464:1790..7392- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGAGATTTAGATGGGGTGAGGCGTGCGCTTCTCCCGTTCACTGCTGA
ACAGGTGGCCAAGAGTCGGAGGGCGCTGAGGAGGCTAGACCTCGACCCGG
AGGGCTTCACGAAGACCCACATGTACACGCTGCTTAAGGTGCTGCAGAGG
CTTCCGCGGCACGTGACCACGCTCACGGAGCAGAGCAGGGAGATTTAGAT
GGGGTGAGGCGTGCGCTTCTCCCGTTCACTGCTGAACAGGTGGCCAAGAG
TCGGAGGGCGCTGAGGAGGCTAGACCTCGACCCGGAGGGCTTCACGAAGA
CCCACATGTACACGCTGCTTAAGGTGCTGCAGAGGCTTCCGCGGCACGTG
ACCACGCTCACGGAGCAGAGAGCCTCCGTCATGGTACCGCTGTGTAACGT
TGACGGAGTAGCATCGGTGCTCTTCACCAAACGTTCTGAGAGCCTGCGGT
CTCACAGCAACGAGATCTGCTTCCCTGGGGGCAAGAGCCTCCGTCATGGT
ACCGCTGTGTAACGTTGACGGAGTAGCATCGGTGCTCTTCACCAAACGTT
CTGAGAGCCTGCGGTCTCACAGCAACGAGATCTGCTTCCCTGGGGGCAAG
GTAGACATCGCGGTGGACCAGCACATCATCCAGACGGCGTTGAGGGAGAT
GGGGGAAGAAATCGGCATCCAAGAGGCTGCGGTAGTAGACATCGCGGTGG
ACCAGCACATCATCCAGACGGCGTTGAGGGAGATGGGGGAAGAAATCGGC
ATCCAAGAGGCTGCGGTA
back to top