mRNA_S-dermatodea_contig11460.948.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11460.948.1
Unique NamemRNA_S-dermatodea_contig11460.948.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11460.948.1 vs. uniprot
Match: A0A6H5JWM9_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.680e-35
Identity = 70/89 (78.65%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 PDEKGC-LRRPVGLNCLNFLSLCGYRPLAGAGSGRGSRSPKFLLLLDLDETLVHCSPHLMDPARRRSGGG--AVRPDLKLEMRGGAPSD 258
            P EKG  L RPVGLNCLNFLSLCGYRP    G GRGSR PKFLLLLDLDETLVHCSPH+M P RR  GGG  A RPDLKLEMRG APSD
Sbjct:  555 PSEKGLHLGRPVGLNCLNFLSLCGYRP----GGGRGSRQPKFLLLLDLDETLVHCSPHVMQPPRRHGGGGRGAPRPDLKLEMRGRAPSD 639
[Close]
BLAST of mRNA_S-dermatodea_contig11460.948.1 vs. uniprot
Match: D7FPY9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.410e-33
Identity = 68/96 (70.83%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 PDEKGC-LRRPVGLNCLNFLSLCGYRPLAGAGSGRGSRSPKFLLLLDLDETLVHCSPHLMDPARRRSGGG---------AVRPDLKLEMRGGAPSD 258
            P EKG  L RPVGLNCLNFLSLCGYRP    G G+GSR PKFLLLLDLDETLVHCSPHLM P RR  G           A RPDLKLEMRG APSD
Sbjct:  252 PSEKGLHLGRPVGLNCLNFLSLCGYRP----GGGKGSRQPKFLLLLDLDETLVHCSPHLMQPPRRHGGXXXXXXXXXXXAPRPDLKLEMRGRAPSD 343
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11460.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWM9_9PHAE1.680e-3578.65FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D7FPY9_ECTSI4.410e-3370.83FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11460contigS-dermatodea_contig11460:6512..6773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D7FPY9
KEGG koko:K15731
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
EC3.1.3.16
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.2168422-CDS-S-dermatodea_contig11460:6511..67721622924204.2168422-CDS-S-dermatodea_contig11460:6511..6772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 6512..6772 +
1694079090.490434-CDS-S-dermatodea_contig11460:6511..67721694079090.490434-CDS-S-dermatodea_contig11460:6511..6772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 6512..6772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11460.948.1prot_S-dermatodea_contig11460.948.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11460 6512..6772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11460.948.1

>prot_S-dermatodea_contig11460.948.1 ID=prot_S-dermatodea_contig11460.948.1|Name=mRNA_S-dermatodea_contig11460.948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
PDEKGCLRRPVGLNCLNFLSLCGYRPLAGAGSGRGSRSPKFLLLLDLDET
LVHCSPHLMDPARRRSGGGAVRPDLKLEMRGGAPSDR
back to top

mRNA from alignment at S-dermatodea_contig11460:6512..6773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11460.948.1 ID=mRNA_S-dermatodea_contig11460.948.1|Name=mRNA_S-dermatodea_contig11460.948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=262bp|location=Sequence derived from alignment at S-dermatodea_contig11460:6512..6773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGACGAGAAGGGCTGCCTCCGGCGACCGGTCGGGCTCAACTGCCTGAA
TTTTCTCAGCCTGTGCGGGTACCGCCCGCTTGCCGGGGCGGGCAGCGGGA
GGGGATCCAGGTCCCCCAAGTTCCTGCTCCTCCTTGACCTCGACGAGACG
CTGGTGCACTGCAGCCCTCACCTCATGGATCCCGCCCGGAGGCGAAGCGG
CGGTGGGGCGGTGCGGCCAGACCTGAAGCTGGAGATGAGGGGCGGCGCCC
CTTCCGACCGGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11460:6512..6773+

>mRNA_S-dermatodea_contig11460.948.1 ID=mRNA_S-dermatodea_contig11460.948.1|Name=mRNA_S-dermatodea_contig11460.948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig11460:6512..6773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGACGAGAAGGGCTGCCTCCGGCGACCGGTCGGGCTCAACTGCCTGAA
TTTTCTCAGCCTGTGCGGGTACCGCCCGCTTGCCGGGGCGGGCAGCGGGA
GGGGATCCAGGTCCCCCAAGTTCCTGCTCCTCCTTGACCTCGACGAGACG
CTGGTGCACTGCAGCCCTCACCTCATGGATCCCGCCCGGAGGCGAAGCGG
CGGTGGGGCGGTGCGGCCAGACCTGAAGCTGGAGATGAGGGGCGGCGCCC
CTTCCGACCGGCCGGACGAGAAGGGCTGCCTCCGGCGACCGGTCGGGCTC
AACTGCCTGAATTTTCTCAGCCTGTGCGGGTACCGCCCGCTTGCCGGGGC
GGGCAGCGGGAGGGGATCCAGGTCCCCCAAGTTCCTGCTCCTCCTTGACC
TCGACGAGACGCTGGTGCACTGCAGCCCTCACCTCATGGATCCCGCCCGG
AGGCGAAGCGGCGGTGGGGCGGTGCGGCCAGACCTGAAGCTGGAGATGAG
GGGCGGCGCCCCTTCCGACCGG
back to top