mRNA_S-dermatodea_contig11460.945.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11460.945.1
Unique NamemRNA_S-dermatodea_contig11460.945.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11460.945.1 vs. uniprot
Match: D7FPY8_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY8_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.180e-35
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 YRNRRTGHVTRNKPVFLGNHDLESPRHFALTDGHDPGESSLPQFSLFITNRVFESPKIPDIPEQVYGDHDALREIIEHPYFCKFSS 258
            YRNRRTG+++R KPVFLGN DLE+PR+FA  D +DPG+S++PQF++ ITN+ FESPKIP IPEQV  DHDALRE +EHPYF KF S
Sbjct:   39 YRNRRTGYISRRKPVFLGNDDLETPRYFAALDNYDPGKSAIPQFAVIITNQEFESPKIPTIPEQVLADHDALRETLEHPYFSKFQS 124
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BLAST of mRNA_S-dermatodea_contig11460.945.1 vs. uniprot
Match: A0A6H5KZI5_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.810e-21
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 YRNRRTGHVTRNKPVFLGNHDLESPRHFALTDGHDPGESSLPQFSLFITNRVFESPKIPDIPEQVYGDHDALR 219
            YRNRRTG+++R KPVFLGN DLE+PR+FA  D +DPG+S++PQF++ ITN+ F+S KIP+IP Q      A +
Sbjct:   32 YRNRRTGYISRRKPVFLGNDDLETPRYFAALDNYDPGKSAIPQFAVIITNQEFDSTKIPNIPGQAVRQRHASK 104
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11460.945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPY8_ECTSI4.180e-3569.77Fibronectin type-III domain-containing protein n=1... [more]
A0A6H5KZI5_9PHAE8.810e-2157.53Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11460contigS-dermatodea_contig11460:424..1312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11460.945.1prot_S-dermatodea_contig11460.945.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11460 425..1312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924204.1606665-CDS-S-dermatodea_contig11460:424..4901622924204.1606665-CDS-S-dermatodea_contig11460:424..490Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 425..490 -
1694079090.4440064-CDS-S-dermatodea_contig11460:424..4901694079090.4440064-CDS-S-dermatodea_contig11460:424..490Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 425..490 -
1622924204.1750298-CDS-S-dermatodea_contig11460:904..10191622924204.1750298-CDS-S-dermatodea_contig11460:904..1019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 905..1019 -
1694079090.460546-CDS-S-dermatodea_contig11460:904..10191694079090.460546-CDS-S-dermatodea_contig11460:904..1019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 905..1019 -
1622924204.192429-CDS-S-dermatodea_contig11460:1235..13121622924204.192429-CDS-S-dermatodea_contig11460:1235..1312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 1236..1312 -
1694079090.470695-CDS-S-dermatodea_contig11460:1235..13121694079090.470695-CDS-S-dermatodea_contig11460:1235..1312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11460 1236..1312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11460.945.1

>prot_S-dermatodea_contig11460.945.1 ID=prot_S-dermatodea_contig11460.945.1|Name=mRNA_S-dermatodea_contig11460.945.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
YRNRRTGHVTRNKPVFLGNHDLESPRHFALTDGHDPGESSLPQFSLFITN
RVFESPKIPDIPEQVYGDHDALREIIEHPYFCKFSS
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mRNA from alignment at S-dermatodea_contig11460:424..1312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11460.945.1 ID=mRNA_S-dermatodea_contig11460.945.1|Name=mRNA_S-dermatodea_contig11460.945.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=889bp|location=Sequence derived from alignment at S-dermatodea_contig11460:424..1312- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAGGAACAGGCGAACCGGGCACGTCACCCGCAATAAGCCGGTTTTCCT
CGGCAACCATGACCTGGAATCGCCACGGTATGTTCCGTTCGGTGGTGCGT
GTATGTCGCACCAGCCGAGTTTGGGATCACCTTAGGTTTCCAAAACCATT
TGCTTTTTAACCATCATCGCAATGCCTCAAGTAGCCTCACTTGCCGTGTC
AGGAAGCCGCTTCGATTTAGTCTGCTTCTATAACTAAGCTTTTTATCAAC
CCTCTGTCTGATACTCCCTGGGTATGGTTTCCGGTCGATGAAGGCACTTC
GCTCTGACAGATGGTCACGATCCGGGTGAATCGTCGCTGCCGCAATTCTC
CCTGTTCATCACGAACCGGGTGTTCGAAAGCCCGAAGATCCCGGACATCC
CGGAGCAGGTTCGAGGTGGAAACTTTCCGATCTATTGTTATAGTAGTAAG
AGTTGAACTGCACGTTTTGCCCATCAATACACCATACACCATTTTTTCGT
GTGTGCTATCAACACTGCTGCAAGCTACCGTGTGGGCGCGAAAAATCCCC
ACCGTTAACGCCGAGGGCAAGTAAATAGATGCCTTCTTGCGATGCGTTCG
TGCACACACGTCTTGATTTTGTTCGACTTCAGACAGGATCTAAGCGTCAA
CGGGCCGCGATCGTGATATAACCTAAGACGTTCCTCTGGCGCCATTTTCA
CTCCACAAGGCAGCACGGTATCCACCGATTCATTGCGCGTACAACCTTGG
TACTTGTCCATCACCGCCTTGCCCCCCCGCCCCCCACGTCCCTCCCGCCT
CGCGGAAACTGCCGCTGCACAGGTGTATGGAGATCATGACGCCCTGCGAG
AAATCATTGAACACCCGTACTTTTGCAAGTTTTCATCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11460:424..1312-

>mRNA_S-dermatodea_contig11460.945.1 ID=mRNA_S-dermatodea_contig11460.945.1|Name=mRNA_S-dermatodea_contig11460.945.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig11460:424..1312- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACAGGAACAGGCGAACCGGGCACGTCACCCGCAATAAGCCGGTTTTCCT
CGGCAACCATGACCTGGAATCGCCACGTACAGGAACAGGCGAACCGGGCA
CGTCACCCGCAATAAGCCGGTTTTCCTCGGCAACCATGACCTGGAATCGC
CACGGCACTTCGCTCTGACAGATGGTCACGATCCGGGTGAATCGTCGCTG
CCGCAATTCTCCCTGTTCATCACGAACCGGGTGTTCGAAAGCCCGAAGAT
CCCGGACATCCCGGAGCAGGCACTTCGCTCTGACAGATGGTCACGATCCG
GGTGAATCGTCGCTGCCGCAATTCTCCCTGTTCATCACGAACCGGGTGTT
CGAAAGCCCGAAGATCCCGGACATCCCGGAGCAGGTGTATGGAGATCATG
ACGCCCTGCGAGAAATCATTGAACACCCGTACTTTTGCAAGTTTTCATCG
GTGTATGGAGATCATGACGCCCTGCGAGAAATCATTGAACACCCGTACTT
TTGCAAGTTTTCATCG
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