mRNA_S-dermatodea_contig11458.943.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 338 bits (866), Expect = 1.760e-109 Identity = 169/264 (64.02%), Postives = 197/264 (74.62%), Query Frame = 1
Query: 1 AAASNDSVCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPGVEPSQCCATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSADCCSATIEASGSLCSVTGEAPCVVDPPEVIASTCPNGLSGYQDDTVCCAEAC-GQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVMVNGTYTDAPTVAPI------------PGATAA---PTAGERGGLFSMAPT 744
AAA+NDSVC+NGQTGV D DTDVCCPLECG CGGEGCG++PGV +QCC++ I++SG VCSDTV PC+V AA A ++TTCSNG+ GIED V+ ICCDAACG CGG GCGN+ GLT DCCS I LCSVT EAPCV+DPP+ +ASTCPNGL+G QD +VCCAE C G CGG+GCGS+ GTNGA DCCS IL +GV C +GV+APC+M+NGTYTDAP AP PGA AA P AG R F+ APT
Sbjct: 96 AAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAPGAVAATEAPVAGTREFRFTQAPT 359
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 291 bits (745), Expect = 3.990e-92 Identity = 181/364 (49.73%), Postives = 211/364 (57.97%), Query Frame = 1
Query: 4 AASNDSVCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPGVEPSQCCATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSADCCSATIEASGSLCSVTGEAPCVVDPPEVIASTCPNGLSGYQDDTVCCAEAC-GQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVMVNGTYTDAPTVAP-IPGATAAPTAGERGGLFSMAPTAVGQXXXXXXXXXXXX-GTGIPTLAPTSVDEIG--------------GQTAAPTSATRDLE--SSAPTASGSTLAPXXXXXXXXXXXXXX-STGFVVTLAALVGGAFAVFAVARN 1035
AAS DSVCDNGQTGVQD DTDVCCPLECG CGGEGCGT+PGV+ SQCCA+ I SG+VC D ++ PC A A AD+ CSNG GIE+ +CCD AC CGG CGN+ GLT ADCC+ TI A+ LCS G APCVVDPPEV ASTC NGL+G +VCCAE C G TNGA DCCS IL + + C D APCVMV GT+T AP V P + T AP A G +MAPT Q GTG+PT APTSV+E G G++ A ++ P+A G T+AP S G VV++AA+ GG FAV A RN
Sbjct: 92 AASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSV-CSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVD--TAPCVMVEGTFTPAPAVVPTVAATTTAPLA--PGETVTMAPTPTSQTAAPTPGSRDLDFGTGVPTPAPTSVEEAGMSSXXXXXXXXXXIGESMAXXXXXXXXXXXTAGPSALGDTMAPSTAPPGAATAGSAALSAGSVVSVAAMAGGMFAVLAATRN 450
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 152 bits (385), Expect = 3.140e-37 Identity = 91/210 (43.33%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 16 DSVCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPG-VEPSQCCATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSAD-CCSATIEASGSLCSVTGEAPCVVDPPEVIASTCPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVM 639
D VC NG G+Q + CC ECGT CGG GC G + CC + I D G +CS T++ PC+V+ CSNG+ GI+ CC A CG CGG GC + G AD CC + IE G LCSVT EAPCVVD C NG+ G Q CC CG CGG GC + G GA +CC + I + G C+ + APC++
Sbjct: 2753 DDVCSNGIPGIQTGN--ACCLAECGT-CGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVD-------DVCSNGIPGIQ--TGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSVTMEAPCVVD------DVCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIV 2944
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.410e-36 Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 1 AAASNDSVCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPGVEPSQCCATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQC 315
AAASNDSVC+NGQTGVQD DTDVCCPL CG CGGEGCG++ GV+ +QCC+ I++SG VCSDTV PC+V AA A ++TTCSNG+ GIED V+ I C C
Sbjct: 96 AAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 133 bits (334), Expect = 5.100e-33 Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 1
Query: 427 VDPPEVIASTCPNGLSGYQDDTVCCAEAC-GQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVMVNGTYTDAPTVAPI------------PGATA---APTAGERGGLFSMAPT 744
+DPP+ +ASTCPNG++G QD +VCCAE C G CGG+GCGS+ GTNGA DCCS+ IL +GV C GVVAPC+M+NGTYTDAP AP PGA A AP AG R F+ APT
Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVATTEAPLAGTREFQFTQAPT 122
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 133 bits (335), Expect = 2.790e-31 Identity = 91/250 (36.40%), Postives = 122/250 (48.80%), Query Frame = 1
Query: 16 DSVCDNGQ---TGVQDSDTDVCCPLECGTQCGGEGCGTVPGVEPSQCCATAILDSGLVCSDTVDPPCIVEAAAA-----------ADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSADCCSATIEASGSLCSVTGEAPCVVDPPEVIAST----------------------------CPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASD-CCSTFILNSGVQCTDGVVAPCV 636
DSVC +G+Q+ D VCCP+ CG CG EGC T PG S CC T +LD+G+ C + PC+++A+++ ++ C G+ GI+ +CC A+CG CGG GC G + A CC + ASG LCSVTGEAPC+ P A + C G+ G Q VCC+ +CG CGG GC +G +G SD CC + SG C APC+
Sbjct: 56 DSVCTTSTGDISGIQNKD--VCCPVSCG-MCGDEGCSTAPGGAAS-CCTTNVLDAGIECGEA---PCVIDASSSTTPAPATPAPTSEVPMCDGGIVGIQ--AKEVCCSASCGSCGGVGCSGRDGGSDA-CCGGGVTASGRLCSVTGEAPCITGPAPTPAPSPPXTVEGPAPTLEPXXXXXXPPAGEVPMCDGGIVGIQAKEVCCSASCGSCGGVGC---SGRDGGSDACCGGGVTASGRLCAVTGEAPCI 292
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 123 bits (308), Expect = 4.100e-27 Identity = 83/241 (34.44%), Postives = 106/241 (43.98%), Query Frame = 1
Query: 22 VCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPG-VEPSQCCATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSAD-CCSATIEASGSLCSVTGEAPCVVD-------------------------PPEVIAST----------CPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPC 633
C NG G+Q + CC ECG CGG C G + CC + I++ G +CS ++ PC ++ CS+G+ GI CC A CG CGG GC G AD CC IE G LCS+T EAPCVVD PP + + C NG+ G Q + CC CG CGG C G GA +CC + I+ G C+ + APC
Sbjct: 746 TCSNGMPGIQSGN--ACCLAECGA-CGGSDCDAFGGGLGADNCCESDIVEHGELCSIALEAPCYLD-------DVCSDGIPGIRS--GNACCLAECGACGGSGCDEFGGGLGADNCCEGNIEEHGELCSITLEAPCVVDGRLVADTVPCPSCLMVCLSEHGLTLPPSLFRISSRYSSLPPDMCSNGIPGIQSGSACCLAECGACGGLDCDEFGGGLGADNCCVSDIVEHGELCSIALEAPC 974
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.960e-26 Identity = 66/139 (47.48%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 223 AAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSADCCSATIEASGSLCSVTGEAPCVVDPPEVIASTCPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVM 639
A A TTCSNGL+G+E G+CC CG CGG GCG+ GLT DCC++TI+ LCSVT EAPCV+D TC NG++ +CC+ CG CGG GC G +G +CC++ I + C D APCVM
Sbjct: 17 AHASGTTCSNGLSGLEK--GGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSNGVA---KGDICCSAGCGYCGGTGCAGRGGLSG-DECCTSKIAAANKSC-DDQSAPCVM 148
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 101 bits (252), Expect = 4.810e-20 Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query: 148 CATAILDSGLVCSDTVDPPCIVEAAAAADNTTCSNGLAGIEDTVDGICCDAACGQCGGDGCGNIVGLTSADCCSATIEASGSLCSVTGEAPCVVDPPEVIASTCPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASDCCSTFILNS 597
C + D C DP C TCSNGLAG E++ G CC CG CGG+GC + G + CC++ I A+ CS G APC++D + TC NGL+G+++ CC+ CG CGG GC + GA+ CC++ I+++
Sbjct: 351 CGCELSDGTSPCGQ--DPACSPGPEGYTCAQTCSNGLAGYENS--GACCSVGCGTCGGEGCSQL-GEGAESCCTSNIIAAREPCSEKGAAPCIMDTDQ----TCSNGLAGFENSGACCSVGCGTCGGQGCSQLG--EGAASCCTSNIISA 489
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.080e-17 Identity = 45/78 (57.69%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 445 IASTCPNGLSGYQDDTVCCAEACGQCGGDGCGSVAGTNGASDCCSTFILNSGVQCTDGVVAPCVMVNGTYTDAPTVAP 678
+ STC NGL GYQD CC CG CGGDGCGSV GT GASDCC + I+NS C +VAPC++ T APT AP
Sbjct: 3 VPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIP---ATPAPTPAP 77 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11458.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11458.943.1 >prot_S-dermatodea_contig11458.943.1 ID=prot_S-dermatodea_contig11458.943.1|Name=mRNA_S-dermatodea_contig11458.943.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=346bp AAASNDSVCDNGQTGVQDSDTDVCCPLECGTQCGGEGCGTVPGVEPSQCCback to top mRNA from alignment at S-dermatodea_contig11458:5514..7148- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11458.943.1 ID=mRNA_S-dermatodea_contig11458.943.1|Name=mRNA_S-dermatodea_contig11458.943.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1635bp|location=Sequence derived from alignment at S-dermatodea_contig11458:5514..7148- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11458:5514..7148- >mRNA_S-dermatodea_contig11458.943.1 ID=mRNA_S-dermatodea_contig11458.943.1|Name=mRNA_S-dermatodea_contig11458.943.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at S-dermatodea_contig11458:5514..7148- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |