mRNA_S-dermatodea_contig11456.942.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11456.942.1
Unique NamemRNA_S-dermatodea_contig11456.942.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11456.942.1 vs. uniprot
Match: D7G8B2_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B2_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.480e-6
Identity = 27/35 (77.14%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 LGSLGVLALVIALHEAGHLTAALSQGIKVRAFSIG 105
            L SLGVL  VI LHE GHL AALSQGIKV AFS+G
Sbjct:   11 LASLGVLTTVITLHEVGHLVAALSQGIKVEAFSVG 45
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11456.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8B2_ECTSI1.480e-677.14PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11456contigS-dermatodea_contig11456:7189..7293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-19_003820.1
Hectar predicted targeting categorysignal peptide
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.9840763-CDS-S-dermatodea_contig11456:7188..72931622924203.9840763-CDS-S-dermatodea_contig11456:7188..7293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11456 7189..7293 +
1694079090.3373127-CDS-S-dermatodea_contig11456:7188..72931694079090.3373127-CDS-S-dermatodea_contig11456:7188..7293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11456 7189..7293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11456.942.1prot_S-dermatodea_contig11456.942.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11456 7189..7293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11456.942.1

>prot_S-dermatodea_contig11456.942.1 ID=prot_S-dermatodea_contig11456.942.1|Name=mRNA_S-dermatodea_contig11456.942.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=35bp
LGSLGVLALVIALHEAGHLTAALSQGIKVRAFSIG
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mRNA from alignment at S-dermatodea_contig11456:7189..7293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11456.942.1 ID=mRNA_S-dermatodea_contig11456.942.1|Name=mRNA_S-dermatodea_contig11456.942.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at S-dermatodea_contig11456:7189..7293+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAGGCTCCCTCGGTGTCCTCGCCTTGGTCATAGCCCTCCACGAGGCGGG
GCACCTTACCGCGGCGCTGTCGCAGGGCATCAAGGTCAGGGCGTTTTCTA
TCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11456:7189..7293+

>mRNA_S-dermatodea_contig11456.942.1 ID=mRNA_S-dermatodea_contig11456.942.1|Name=mRNA_S-dermatodea_contig11456.942.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig11456:7189..7293+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAGGCTCCCTCGGTGTCCTCGCCTTGGTCATAGCCCTCCACGAGGCGGG
GCACCTTACCGCGGCGCTGTCGCAGGGCATCAAGGTCAGGGCGTTTTCTA
TCGGGCTAGGCTCCCTCGGTGTCCTCGCCTTGGTCATAGCCCTCCACGAG
GCGGGGCACCTTACCGCGGCGCTGTCGCAGGGCATCAAGGTCAGGGCGTT
TTCTATCGGG
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