mRNA_S-dermatodea_contig11452.940.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11452.940.1
Unique NamemRNA_S-dermatodea_contig11452.940.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 9.130e-42
Identity = 76/91 (83.52%), Postives = 83/91 (91.21%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEV 273
            +VGERDYRIFVENLNNVADTLAVDI+TSVVSE H+EGLRIETD+  LLEGGSVL FD CYTG+P+ R+LRVKNTTV AMDVSL SDRPGEV
Sbjct:  267 EVGERDYRIFVENLNNVADTLAVDILTSVVSEDHREGLRIETDKDGLLEGGSVLHFDKCYTGMPVWRKLRVKNTTVHAMDVSLGSDRPGEV 357          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6H5L1W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.070e-41
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEV 273
            +VG+RDYRIFVENLNNVADTLAVDI+TSVVSE H+EGLRIETD+  LLEGGSVLQFD C+TG+P+ R+LRVKNTTV +MDVSL SDRPGEV
Sbjct:  289 EVGQRDYRIFVENLNNVADTLAVDILTSVVSEGHREGLRIETDKDGLLEGGSVLQFDKCFTGMPVWRKLRVKNTTVHSMDVSLGSDRPGEV 379          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A024GCH3_9STRA (Uncharacterized protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GCH3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.580e-17
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
            +VGER + I V+NL++ A+   + + T    E H+EGL I    G LL  GS L F  CY+GIP S+ L ++NTT   + V LSSDRP EV  +++
Sbjct:  433 EVGERSFEIQVQNLHDSANVRTLKVHTVANKEQHREGLLIRVPGGSLLLSGSKLDFGDCYSGIPTSKTLLLRNTTENVLQVELSSDRPKEVSFELK 528          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6G0WUD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.550e-16
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
            +VGE+ + I  +NL++  +   V I      E H+EGL I    G  L GGS+L F  CYTGIP S+ L +KNTT  A+ + L SDRP E+  +++
Sbjct:  373 EVGEQFFEILAQNLHDARNVKRVKIHAIASKEHHREGLSIREPNGSYLMGGSLLDFGDCYTGIPTSKALVLKNTTEAALHIELLSDRPKEITFELK 468          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A485LAB2_9STRA (Aste57867_18395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.580e-16
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
            +VGE+ + + V+NL++  +   + I      E H+EGL I    G  L GGSVL F  CYTGIP S+ L VKN T  A+ + L SDRP EV  +++
Sbjct:  377 EVGEQFFEVLVQNLHDSRNVKTLKIHAIASKEHHREGLSIRDSNGSYLMGGSVLDFGDCYTGIPTSKVLVVKNMTEVALQIELLSDRPKEVTFELK 472          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.050e-13
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADT--LAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGE 270
            QVGERDYRI++ENLN++A +  L VDI+T                         V+ F  CY+G+ MSR+LRVKNTT   MDV LSSD PGE
Sbjct: 1778 QVGERDYRIYMENLNDLATSNLLTVDILT-------------------------VVNFGDCYSGVLMSRKLRVKNTTQVPMDVRLSSDCPGE 1844          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: A0A6G0KZ72_9STRA (Uncharacterized protein n=7 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KZ72_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.120e-13
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    1 QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
            ++GER + I  +NL++  +   + I      E H+EGL I+   G  L  GS L F  CYTGIP S+ + ++N T  A+ V L+SDRP EV  +++
Sbjct:  357 EIGERFFEIQAQNLHDSRNVKTLKIHAITNQEHHREGLSIKEPSGSYLMSGSRLDFGDCYTGIPSSKVILMRNMTEVALHVELTSDRPKEVTFELK 452          
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Match: G4YG66_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG66_PHYSP)

HSP 1 Score: 72.0 bits (175), Expect = 1.340e-12
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    4 VGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEGGSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR 288
            +GER + I  +NL++  +   + I      E H+EGL I+   G  L  GS L F  CYTGIP S+ + ++N T  A+ V L+SDRP EV  +++
Sbjct:  307 IGERFFEIQAQNLHDSRNVKTLKIHAITNQEHHREGLSIKEPSGSYLMSGSRLDFGDCYTGIPSSKVILMRNMTEVALHVELTSDRPKEVTFELK 401          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11452.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LHH6_ECTSI9.130e-4283.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1W0_9PHAE4.070e-4181.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024GCH3_9STRA8.580e-1743.75Uncharacterized protein n=8 Tax=Albugo candida Tax... [more]
A0A6G0WUD1_9STRA5.550e-1641.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LAB2_9STRA7.580e-1642.71Aste57867_18395 protein n=1 Tax=Aphanomyces stella... [more]
A0A835YT04_9STRA2.050e-1347.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0KZ72_9STRA7.120e-1338.54Uncharacterized protein n=7 Tax=Phytophthora fraga... [more]
G4YG66_PHYSP1.340e-1238.95Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11452contigS-dermatodea_contig11452:4904..5194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.6e-35
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.912971-CDS-S-dermatodea_contig11452:4903..51941622924203.912971-CDS-S-dermatodea_contig11452:4903..5194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11452 4904..5194 -
1694079090.2870023-CDS-S-dermatodea_contig11452:4903..51941694079090.2870023-CDS-S-dermatodea_contig11452:4903..5194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11452 4904..5194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11452.940.1prot_S-dermatodea_contig11452.940.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11452 4904..5194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11452.940.1

>prot_S-dermatodea_contig11452.940.1 ID=prot_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
QVGERDYRIFVENLNNVADTLAVDIITSVVSETHKEGLRIETDRGDLLEG
GSVLQFDSCYTGIPMSRRLRVKNTTVKAMDVSLSSDRPGEVRCDMR*
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mRNA from alignment at S-dermatodea_contig11452:4904..5194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11452.940.1 ID=mRNA_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at S-dermatodea_contig11452:4904..5194- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGTGAGCGAGACTACCGAATTTTTGTGGAAAACCTCAACAACGT GGCGGACACGCTGGCAGTGGACATAATCACGTCGGTCGTTTCCGAGACGC ACAAGGAAGGCTTGCGGATCGAGACGGACAGGGGGGACTTGCTGGAGGGA GGCAGTGTCCTGCAGTTCGACAGCTGCTACACGGGCATCCCGATGTCGCG GCGGCTGCGCGTGAAAAACACGACGGTGAAAGCCATGGACGTCAGCCTCA GTTCTGACAGGCCGGGAGAGGTGAGATGCGATATGAGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11452:4904..5194-

>mRNA_S-dermatodea_contig11452.940.1 ID=mRNA_S-dermatodea_contig11452.940.1|Name=mRNA_S-dermatodea_contig11452.940.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig11452:4904..5194- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGTGAGCGAGACTACCGAATTTTTGTGGAAAACCTCAACAACGT
GGCGGACACGCTGGCAGTGGACATAATCACGTCGGTCGTTTCCGAGACGC
ACAAGGAAGGCTTGCGGATCGAGACGGACAGGGGGGACTTGCTGGAGGGA
GGCAGTGTCCTGCAGTTCGACAGCTGCTACACGGGCATCCCGATGTCGCG
GCGGCTGCGCGTGAAAAACACGACGGTGAAAGCCATGGACGTCAGCCTCA
GTTCTGACAGGCCGGGAGAGGTGAGATGCGATATGAGATGACAGGTGGGT
GAGCGAGACTACCGAATTTTTGTGGAAAACCTCAACAACGTGGCGGACAC
GCTGGCAGTGGACATAATCACGTCGGTCGTTTCCGAGACGCACAAGGAAG
GCTTGCGGATCGAGACGGACAGGGGGGACTTGCTGGAGGGAGGCAGTGTC
CTGCAGTTCGACAGCTGCTACACGGGCATCCCGATGTCGCGGCGGCTGCG
CGTGAAAAACACGACGGTGAAAGCCATGGACGTCAGCCTCAGTTCTGACA
GGCCGGGAGAGGTGAGATGCGATATGAGATGA
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