mRNA_S-dermatodea_contig11449.939.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11449.939.1
Unique NamemRNA_S-dermatodea_contig11449.939.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11449.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11449contigS-dermatodea_contig11449:986..5029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.8739512-CDS-S-dermatodea_contig11449:985..11381622924203.8739512-CDS-S-dermatodea_contig11449:985..1138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11449 986..1138 +
1694079090.2665672-CDS-S-dermatodea_contig11449:985..11381694079090.2665672-CDS-S-dermatodea_contig11449:985..1138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11449 986..1138 +
1622924203.883268-CDS-S-dermatodea_contig11449:4795..50291622924203.883268-CDS-S-dermatodea_contig11449:4795..5029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11449 4796..5029 +
1694079090.2753017-CDS-S-dermatodea_contig11449:4795..50291694079090.2753017-CDS-S-dermatodea_contig11449:4795..5029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11449 4796..5029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11449.939.1prot_S-dermatodea_contig11449.939.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11449 986..5029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11449.939.1

>prot_S-dermatodea_contig11449.939.1 ID=prot_S-dermatodea_contig11449.939.1|Name=mRNA_S-dermatodea_contig11449.939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
GGGHDILVYRSYRNGQQTLHRGHLQRTSFQAASAVAGRMPWRASSIASGI
QARTRNDAPWRSRQYEPSADLTERRPSETFRNTDRGTTEAERAVDRARNA
PASVAGGARRIWRGAVEQAVGKQRVRGFT
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mRNA from alignment at S-dermatodea_contig11449:986..5029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11449.939.1 ID=mRNA_S-dermatodea_contig11449.939.1|Name=mRNA_S-dermatodea_contig11449.939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4044bp|location=Sequence derived from alignment at S-dermatodea_contig11449:986..5029+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCGGCCATGATATCCTCGTGTACAGGTCCTACCGTAATGGCCAACA
AACGCTACACCGCGGACACCTGCAGAGAACGAGCTTCCAAGCAGCTTCGG
CTGTGGCAGGGCGCATGCCTTGGCGAGCTAGCTCCATCGCGAGCGGGATA
CAGGTGCAGGCCTACTAGTATTGCTTGATCGATTGGTTGATTTATTGATT
GATTATCACACACACAAACGACCGGCCAGCCGTTTTTTTGCAATTACAAG
AACGGTCACCGATCCCGGTCGTGGTCTCACGACGATGAATACACAAGAGA
AAATGGGATCCAGCACCCCTACTTTTAAGGGGGTGTGGTGGAGAACAAAT
TCGCGTATGCACAATTGTCAACCATCTGGAAATTGGTTACATATTTTGAA
TACCACGCACTCTGCAAGGAAAAGGACACTAACTCCAGTATAAACAATGT
CAAGAAATCGAGGTGCGGTATCGTAAAATTTGCTTCTGGGGGTGTTCACC
TCACTGGAAGTTATGCGATTTATAGCTTCATTGGTTCGGCATCTAGCTTT
CTTATTCAGATCGCGAACCTATTTGCGCCGCGCGTTGCCCTCGATTTGCC
CATCTAAATCAGGCGATTTGTTGTATCAATGTTCGCCGATCTGAATAAGA
AAGGTAGATGCCGAACCAATGAAGCTATAAATCTCAAGGTTTCCAGCGAG
GGGAAAACCCCCAAAAGCAAATTTTACGATACCGCACCTCGGTTTCTTGG
CATTGTTTATACTGGATTTAGTGTGTTTTCCTTGCAGAGTGCGTGGGATT
CAAAATATGTCACCATTTTTCCAGATGGTTGACAATTGTGCATATTCGAA
TCTGTTCTCCACCCCACACCCTTAACAGTACCCCAAACGAAAAACGCGAT
GTCCAGGCATGACGGATGTAACCCGCACGCCGCCCGGAACGCCTCGTGTG
GGCGAGCTCGACATCGGGGCATCTTGGCCCTCGCACGCGTTGGTTCAGGA
TTGGAGCTTCTAATAGATAGAAGGGGGAGGGGTTGTCGGGTGGCTATGAT
AGCAACAAAAATAATGTTGCAATCCGGAAGCTTCTGGCTGAACCTTGTAA
AGTCGGAACGGGATCTGAGACGGGCTGGCCAATCAGGCGTGAGCCCAGCG
AAACGGAAAAACGCCTTCGACTATATGTGTAGCTCCTGCGCAACAGACAA
GAGCCGGTTTATGTTACCCCCGGTATCTTTGGAGGATTGCTCGTGTTACC
AGTAAGTTTTTCTTGTATTTATTTCACGTGTTTATTATTGTTGTTAGTAT
TATATATACTAGTAGGTAGCCAAGGTTATTATTCATATTATTACTACTAC
AAGTAGTAGGTAGGCACAGGCTACGCCCGCGAGGTGAAAAACCCTATGAT
TTGCTTAGCAGATATTTCACCACCTCAACTCTGAATCGCAGGTAGTTCTG
TCCAGAAGAATCAACTCTAAATCGCTATTAAAAAACGTTAATTGTTCCTT
TAGTTAATGGGGGATGATTAGTATTGTTATTATCGAGGTCGCAAAAGAGG
TACATAAGGAACACACAGAAGACGTACAGAAGGAACACACGGAATAAGAA
GATCCAAGGTACACGACGATAATAAAACCAAACAAGAGCTATAGCCTCAA
AGCGAATAATCCCAATGTTTTCCTAGAACGACACCTGACTATAACACTAC
GGCTTAAAGATGAAGCCTTGATCAATAATCCGACTACTGTTTTTAATGAG
ACGCTCAGACGGTCGTTTGCGGGAGTGTGCGCCGCCTGTGGAGTGCGTAT
ATTACGTCATAAAAAGGTACAATTTTTTGCCATCAATGGAGCCCCATGGG
AAGGATCCAGGATTGCAATCTGGATTTGGTAAGAGCGAGAGTATCGGTCT
GTTGCATGTTCAGAAAATCGGTCGGAGAAACGCTCGGAGAATGTTCGGAG
AATGTTCGGAGAATGTTACGGATGGATGCATTGCCTCGAGATTCTAGAAG
GCGTTATGATAGTTACTTCAGTCAGTCTGTATTGGTGTCTCAGTTAGTGC
CCAGGCTAGGGCACGACGCCGAGGGCTAGTTGCAAGGGCAGCCGGTCGAA
CAACAGCTGTCTAGTGAGCAGGACTACTGCCGCTGTTGGTTCAGAGTACT
CCCTGGATTTTGTACGAGCGAAAGCGTTGACTTCCTGTTGCGACGTTGTG
ATTTGGGGGAGATGCCCCCCCGAGGTTTCCACTTCCCCCCCTCTGGGGGG
GAGGGGGGGGGGTCCATAGGTGTAGCTTGGAACGTCTTCCCTACGCCCGC
TCGATGTTTTATAAACCATTATTTTGAAAGGGGGGTGACTACACACAAAT
CACCAAGTATACGGAAGCAAAGCACTAGAGTATCATCTCTTTGATTGATT
GATTGATTGATTGATTAGAAGCAGACGTGTCATATAGCCGATCGGCTTAA
TCCGACCCGACTCGTGGTTGGTCAGATGCTTTCGCGAAGAGTCGAAGAGA
ACCTGACTAATCATAACTCTACTTCTACTATACACCGTACCATCCCTGGT
ACGGTGTACAGGTGCAAGAAAGAAGAGATAGTACCGCAGGAATAAAAAAA
ACGCTAGAAGAGGACTCGGAATCGGACAATGCCCCCTCGCCTCTCCACCA
GGTGTCCTTATTGTACTACGGCCAGCTGAAACGCGGCAGGGACACGAGTA
GAGGAGTGAGAGCAGATGGAAAATATGCATAGAAGAAGCAAAGAAGACAT
AGAAAAGAGACTCAAGATCCAGGAAAAATAAATAAAAACTAAACTGAAAA
GCAGGAAAAAATATGTATCAAAAGAAAACCGCCAGACTGTGCTAGCGAAG
GGGTAGCAGAAACAGACTCGACAACCCCTCGCCCCGCGAACAAAACACAA
AAAGGGCCTGCCGGATATCCCTGGTCGAATGCGGGGTATTAAATACCTAG
ATGGAGGGATTGACTGTACTGTGATACGGTATAGCAATGACGCCGTCAGC
GTCCAGCGCCCATTGTGTCAATGATGGTTTTAGCAGCTCGTATATATAAT
ACGCGGTTCGTTGCCGCATTTAAGTTTTTGCACACATGTGACAGAAGACT
GACTTGTCTGAGGTCCGTCTGTGGTGACCAAGGTGTCATCCCATCTCTCT
TATCTTATCCCCGGTTCTTACCTTGGGCTTTTAATCACGAATGCGTTGGG
TTTGTTCGGCACTCCCGCAGCTTGCCGACTCCTCGGATTTTGCTCGTCGC
GGGGGGACTTGGTGCGGAGCCTTCGCCTTGATCTTTTGTCTTTTGTCAAT
TAATTACCACTTTTGTCCGTTTTTGTAATTTAACCCGTTTGGTACTATTA
AATTAGTATTAATAATGAATAGGGCTTCCGAAACGACCAAAAACGCTCTC
GCTGCCAGTCGACAGCTACAGCCCCGTTTCCTTGCGCTCCGTTCTATCTC
ACTCCTGCGTCAAAACCCATGGAGTTTCCCACGGCCCCGCTTCAAGCACG
CCTCATTACGTGCTAACAGGCGCTCCAAACAGTATTAGGGGCTAGTACCA
AAAGGGTTAAAAGCGGTTTTAGAGTGACCATGCCCACCCTCTTTCCTACA
CGTTTGGCGTAAACACATATCATATCGATTTTAGAGAGGGGACTAAATTG
ATGCAAAAACAACTGGATTTTAGAGCACGCTCTCTCCTGGCCTCTCATAA
GAGTAGGAGTTATCACCTCACGGGCGTAAATAACCATGACTAACCAAGGC
TACCTACCATTTTAATTTTAATCCCGACTCCGATGATCATATGTACCCAT
CGCCGTCCAGGCACGAACGAGAAACGATGCACCTTGGCGGTCACGCCAGT
ATGAGCCAAGCGCAGACCTTACAGAACGCCGACCAAGCGAGACCTTCCGG
AATACGGACCGAGGAACAACGGAGGCAGAGAGAGCCGTTGACCGCGCAAG
GAATGCTCCGGCGTCCGTCGCTGGAGGAGCACGGCGCATTTGGCGCGGCG
CCGTTGAGCAGGCTGTCGGCAAGCAGCGCGTCCGCGGATTTACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11449:986..5029+

>mRNA_S-dermatodea_contig11449.939.1 ID=mRNA_S-dermatodea_contig11449.939.1|Name=mRNA_S-dermatodea_contig11449.939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig11449:986..5029+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCGGCCATGATATCCTCGTGTACAGGTCCTACCGTAATGGCCAACA
AACGCTACACCGCGGACACCTGCAGAGAACGAGCTTCCAAGCAGCTTCGG
CTGTGGCAGGGCGCATGCCTTGGCGAGCTAGCTCCATCGCGAGCGGGATA
CAGGGCGGCGGCCATGATATCCTCGTGTACAGGTCCTACCGTAATGGCCA
ACAAACGCTACACCGCGGACACCTGCAGAGAACGAGCTTCCAAGCAGCTT
CGGCTGTGGCAGGGCGCATGCCTTGGCGAGCTAGCTCCATCGCGAGCGGG
ATACAGGCACGAACGAGAAACGATGCACCTTGGCGGTCACGCCAGTATGA
GCCAAGCGCAGACCTTACAGAACGCCGACCAAGCGAGACCTTCCGGAATA
CGGACCGAGGAACAACGGAGGCAGAGAGAGCCGTTGACCGCGCAAGGAAT
GCTCCGGCGTCCGTCGCTGGAGGAGCACGGCGCATTTGGCGCGGCGCCGT
TGAGCAGGCTGTCGGCAAGCAGCGCGTCCGCGGATTTACGGCACGAACGA
GAAACGATGCACCTTGGCGGTCACGCCAGTATGAGCCAAGCGCAGACCTT
ACAGAACGCCGACCAAGCGAGACCTTCCGGAATACGGACCGAGGAACAAC
GGAGGCAGAGAGAGCCGTTGACCGCGCAAGGAATGCTCCGGCGTCCGTCG
CTGGAGGAGCACGGCGCATTTGGCGCGGCGCCGTTGAGCAGGCTGTCGGC
AAGCAGCGCGTCCGCGGATTTACG
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