mRNA_S-dermatodea_contig11436.931.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11436.931.1
Unique NamemRNA_S-dermatodea_contig11436.931.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11436.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11436contigS-dermatodea_contig11436:5991..6785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size797
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.3935266-CDS-S-dermatodea_contig11436:5990..64641622924203.3935266-CDS-S-dermatodea_contig11436:5990..6464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 5991..6464 +
1694079089.9635704-CDS-S-dermatodea_contig11436:5990..64641694079089.9635704-CDS-S-dermatodea_contig11436:5990..6464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 5991..6464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.403984-UTR-S-dermatodea_contig11436:6464..67851622924203.403984-UTR-S-dermatodea_contig11436:6464..6785Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11436 6465..6785 +
1694079089.9729698-UTR-S-dermatodea_contig11436:6464..67851694079089.9729698-UTR-S-dermatodea_contig11436:6464..6785Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11436 6465..6785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11436.931.1prot_S-dermatodea_contig11436.931.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11436 5991..6464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11436.931.1

>prot_S-dermatodea_contig11436.931.1 ID=prot_S-dermatodea_contig11436.931.1|Name=mRNA_S-dermatodea_contig11436.931.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
SFSVPGVTTVTVVDARSVLLLSLVFPPRIPHRVSLRPPPFQPLARQAESE
KRASGPRQTRSPPLFPETVVIPLTNSCRSCWLRRSPRPDVTAVSEGSPDV
GVISYSRRRKMSVVGVRTCPGVPPSSLLDPLPSFLLEPRPQLCLSREPLR
NGVEVAV*
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mRNA from alignment at S-dermatodea_contig11436:5991..6785+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11436.931.1 ID=mRNA_S-dermatodea_contig11436.931.1|Name=mRNA_S-dermatodea_contig11436.931.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at S-dermatodea_contig11436:5991..6785+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTTTTCCGTCCCGGGTGTTACCACCGTGACGGTCGTTGATGCCCGATC
GGTTCTGCTGCTCTCTCTGGTCTTCCCTCCTCGGATTCCGCACAGGGTAT
CGCTGCGGCCACCTCCCTTCCAACCACTCGCACGGCAAGCGGAATCCGAA
AAAAGGGCGTCAGGGCCTCGGCAGACGCGATCACCGCCATTATTTCCGGA
AACGGTGGTGATCCCGTTGACAAATAGTTGCCGCTCGTGCTGGCTTCGCC
GCTCGCCTCGCCCGGACGTGACTGCGGTTTCGGAAGGGTCTCCCGACGTC
GGGGTGATTTCGTACAGCAGGCGCCGCAAAATGTCTGTCGTTGGGGTACG
GACGTGCCCAGGTGTCCCTCCCTCTTCTCTTTTAGACCCACTGCCGTCTT
TCCTGCTGGAGCCGCGTCCGCAGCTCTGCTTATCACGAGAACCGCTTCGA
AACGGTGTCGAGGTCGCCGTCTGAAGAGTAGCGGTAACGTTCGGCGGCGT
TACCGGTACCTGTCCAGGAGAAGGTGGGCCCGCCGAGGGACTCTTCCGTC
TCTTCGAGCCGTCCCTACGGCATGGATCCCTGATGATGCTGTGGCATCTT
CGCCCCGCGGGGCCGACGGCCGGAGAGCAGCAGCACGCCTCATCGCCTTT
CTGGCGGGAGTCTAGAACACGATTGGGGGGACTGAAGAGTGATTGCCGGC
CCTGAGACGGATTCGGTCGCAATCCGGCCGGGGTCTCCATGCGAGCGGAA
CAGTTACCGCACCCCGAACGGGGTACAACACGCGGCGCTAAGAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11436:5991..6785+

>mRNA_S-dermatodea_contig11436.931.1 ID=mRNA_S-dermatodea_contig11436.931.1|Name=mRNA_S-dermatodea_contig11436.931.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig11436:5991..6785+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTTTTCCGTCCCGGGTGTTACCACCGTGACGGTCGTTGATGCCCGATC
GGTTCTGCTGCTCTCTCTGGTCTTCCCTCCTCGGATTCCGCACAGGGTAT
CGCTGCGGCCACCTCCCTTCCAACCACTCGCACGGCAAGCGGAATCCGAA
AAAAGGGCGTCAGGGCCTCGGCAGACGCGATCACCGCCATTATTTCCGGA
AACGGTGGTGATCCCGTTGACAAATAGTTGCCGCTCGTGCTGGCTTCGCC
GCTCGCCTCGCCCGGACGTGACTGCGGTTTCGGAAGGGTCTCCCGACGTC
GGGGTGATTTCGTACAGCAGGCGCCGCAAAATGTCTGTCGTTGGGGTACG
GACGTGCCCAGGTGTCCCTCCCTCTTCTCTTTTAGACCCACTGCCGTCTT
TCCTGCTGGAGCCGCGTCCGCAGCTCTGCTTATCACGAGAACCGCTTCGA
AACGGTGTCGAGGTCGCCGTCTGATCGTTTTCCGTCCCGGGTGTTACCAC
CGTGACGGTCGTTGATGCCCGATCGGTTCTGCTGCTCTCTCTGGTCTTCC
CTCCTCGGATTCCGCACAGGGTATCGCTGCGGCCACCTCCCTTCCAACCA
CTCGCACGGCAAGCGGAATCCGAAAAAAGGGCGTCAGGGCCTCGGCAGAC
GCGATCACCGCCATTATTTCCGGAAACGGTGGTGATCCCGTTGACAAATA
GTTGCCGCTCGTGCTGGCTTCGCCGCTCGCCTCGCCCGGACGTGACTGCG
GTTTCGGAAGGGTCTCCCGACGTCGGGGTGATTTCGTACAGCAGGCGCCG
CAAAATGTCTGTCGTTGGGGTACGGACGTGCCCAGGTGTCCCTCCCTCTT
CTCTTTTAGACCCACTGCCGTCTTTCCTGCTGGAGCCGCGTCCGCAGCTC
TGCTTATCACGAGAACCGCTTCGAAACGGTGTCGAGGTCGCCGTCTGA
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