mRNA_S-dermatodea_contig11436.930.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11436.930.1
Unique NamemRNA_S-dermatodea_contig11436.930.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11436.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11436contigS-dermatodea_contig11436:1081..4756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003810.1
Exons6
Model size1035
Cds size1035
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11436.930.1prot_S-dermatodea_contig11436.930.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11436 1081..4756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.4335082-CDS-S-dermatodea_contig11436:1080..12651622924203.4335082-CDS-S-dermatodea_contig11436:1080..1265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 1081..1265 +
1694079089.9819555-CDS-S-dermatodea_contig11436:1080..12651694079089.9819555-CDS-S-dermatodea_contig11436:1080..1265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 1081..1265 +
1622924203.4455388-CDS-S-dermatodea_contig11436:1517..18341622924203.4455388-CDS-S-dermatodea_contig11436:1517..1834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 1518..1834 +
1694079089.9908364-CDS-S-dermatodea_contig11436:1517..18341694079089.9908364-CDS-S-dermatodea_contig11436:1517..1834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 1518..1834 +
1622924203.455668-CDS-S-dermatodea_contig11436:2304..25671622924203.455668-CDS-S-dermatodea_contig11436:2304..2567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 2305..2567 +
1694079089.9997141-CDS-S-dermatodea_contig11436:2304..25671694079089.9997141-CDS-S-dermatodea_contig11436:2304..2567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 2305..2567 +
1622924203.4678671-CDS-S-dermatodea_contig11436:3483..35571622924203.4678671-CDS-S-dermatodea_contig11436:3483..3557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 3484..3557 +
1694079090.0090044-CDS-S-dermatodea_contig11436:3483..35571694079090.0090044-CDS-S-dermatodea_contig11436:3483..3557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 3484..3557 +
1622924203.4820802-CDS-S-dermatodea_contig11436:4120..42591622924203.4820802-CDS-S-dermatodea_contig11436:4120..4259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 4121..4259 +
1694079090.0249386-CDS-S-dermatodea_contig11436:4120..42591694079090.0249386-CDS-S-dermatodea_contig11436:4120..4259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 4121..4259 +
1622924203.4926229-CDS-S-dermatodea_contig11436:4699..47561622924203.4926229-CDS-S-dermatodea_contig11436:4699..4756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 4700..4756 +
1694079090.038305-CDS-S-dermatodea_contig11436:4699..47561694079090.038305-CDS-S-dermatodea_contig11436:4699..4756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11436 4700..4756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11436.930.1

>prot_S-dermatodea_contig11436.930.1 ID=prot_S-dermatodea_contig11436.930.1|Name=mRNA_S-dermatodea_contig11436.930.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=345bp
RIDRVLRKSRTVGNVRSLDPNRPDLLARATRLSNLYGTSLDSGLARKGAG
ERPCRQRRHKLSNKHGSGSPGVSREQKRNHAPNDMTLGRKKKKILRSALE
KAGEAALRYTREVSVGMRAFDGPQLGPKDVKDALLRIFRIRISTREAAAL
ITHFTKVRQRNHMLRGLNLRIEHGTLLHAIQRLRRTLLTRHPLPAMGGDE
SVALRLMSGSRSGSALSDHRIGARSRGKVEPTVKMPSFAGVRAPHSMFRV
GVTRRSDNVANVVRALAKVDRAASAYDPRSRIDSLREADLSRGTSPRAFG
GVLLARFDVRVDPAEQKELVALLEDETGTVDVERFRVYFLSLIHE
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mRNA from alignment at S-dermatodea_contig11436:1081..4756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11436.930.1 ID=mRNA_S-dermatodea_contig11436.930.1|Name=mRNA_S-dermatodea_contig11436.930.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3676bp|location=Sequence derived from alignment at S-dermatodea_contig11436:1081..4756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGATTGACCGAGTTCTGCGCAAATCACGGACCGTGGGCAACGTGCGATC
GTTAGACCCCAACCGCCCAGACCTCTTGGCTCGAGCAACACGGCTTTCAA
ACCTCTACGGCACCAGCCTCGACTCTGGGCTCGCTCGAAAAGGCGCCGGG
GAAAGGCCGTGTCGACAAAGAAGACACAAGCTCAGGTACTGTTTGTACGC
GTTCTGTCGCGTCGCACCGCATTTCAAGTGGCACACACACGCCAGGATTC
TTCCGTGTCAACATTGTTTTTCGTGTGTCGTGCGTTTGGAGTGCACCCCC
ATGAACAACGTCGGAGTAGAAGAAGCTAGAATGACACTACTCTAGGTACG
GGGCCGCATTTTCTTATTGAAATGTTTACCTAGACCTTTCCCGTGACTTG
AACTCCCGAACTTGTCCGCGAACAGTTCGCCTGACAGCAATAAGCACGGC
AGCGGCAGCCCCGGTGTATCTCGAGAGCAGAAGAGAAATCACGCCCCGAA
CGACATGACTCTGGGACGCAAAAAAAAAAAAATCCTACGGTCCGCCCTTG
AAAAGGCTGGCGAGGCCGCCCTGCGGTACACGAGAGAGGTTTCTGTGGGG
ATGAGAGCCTTTGACGGGCCTCAGCTGGGACCGAAGGATGTCAAAGATGC
ACTGCTGCGGATATTTCGAATTAGAATTTCTACACGCGAGGCTGCCGCCT
TGATCACGCACTTCACCAAGGTCAGACAACGAAACCACATGTTGCGGGGG
TTGAGTTGCTGCGGCCACCAACTGGAGATGCGCGTGCACGTGCACGTGCA
CACATCTCTCTATATAGGAAGGATACTGTCTTACCGGGAAACACAGGCTG
CACGCGTTACCAGTGATTGGCTGCTTTCGATCTACACGCACGTCGAGGGT
AAAACGTGTGAAAGCGAGAGATACACTTGTACCAGTATACATATATGAGG
ATACATTTTCGCACAGTCATTTTGCCACGCTCTCCTTCTAATAAGCTGCC
GTTTCCCCATCCTAGAACAATGTACTGGCCGGCGGTAGCCCTGGTACCTC
CTCCATTCAAGGCCGCCGCGCCTACACCCTGCAAAGCCACGTACAATATA
TCCATTAACATCAATTCGTAAAAACAAACGCGAACTGTGCGCATGCCCCT
TTTTCCCATTTTGCTTGCGTCGTCGGCGTCAAATATAACACAGAGCGACA
ACAGCCACGCGCGGCATATAGAAGATCTGCGCATCGAACACGGGACTTTG
CTTCACGCGATACAGCGGCTTCGCCGGACGCTACTCACGAGGCACCCACT
CCCAGCGATGGGTGGTGATGAATCTGTGGCACTGCGTTTAATGAGTGGCT
CTCGAAGTGGATCCGCGCTAAGTGATCACCGGATTGGCGCACGGAGCCGC
GGTAAAGTGGAGCCAACGGTGAAAATGCCATCCTTCGCAGGTGTGCGTGC
CCCACACTCGATGTTCCGTGTAGGAGTGACAAGAAGAGTAGTTTTCGGGC
GTTGCGTGAAACAGTGTCTGACGCCAAACATACTGATACTAAAATAGTGA
TAGCCTATTGTTTCAACAATAGGCCCGGAGTGAAAGATCCAGCGTGTTGT
TGTCAGCTTGGACGAACGAAGAGTCTTGAGAGCATTTCATTTTAACACCT
GCCGAATTTCCCAAGAAGAAACCACCTGCTGCGGGTTTGGTTTTCTACGG
CGGCTCCGTCGGTCGAGTTCTGTCTGCCTCAAGGTTTGAGCATTTAACGC
ACAGGCCGTCGGCGAGCTCCGCTTGGCCCATCCCAGACGAAAACGTTGTC
AATCTAAATATTAACGTACTGTCGATCTTTGCAACTCTACGGCAGCTCCG
TCGGTCGAGTTCTGTCTGCCTCAAGGTTTGAGCATTTAACGCACTTGGCA
GGCCGTCGGCGAGCTCCGCTTGGCCCATCCCAGACGAAAACGTTGTCAAT
CTAAATATTAACGTACTGTCGATCTTTGCAACTCTTGCTCCCAGCGAGTG
GTGGTCTCGAGACCGCATGCATGCATGATCCTCAAACTTGAAACATATAC
ATACCTCGACGCGTGGCTGGTAGCGCAACACTCCCCCCGACTTGTTGTGT
AGGTTCAGAGTATATTAAACCAACCGCCCCGTGCGTGAGGGCCTTGTTCG
TTTCTGTCGACCCGCTCCGACCGCTTGAGCTCATCCTTTAAACATACATG
CCTCCTATTAACTTTAGTACTGGGCCTTGCCGCATTTTTTTCACGGAGAG
AGCTGCGCTATATTTTTGCATTCCAGTGAAATAGCTGGACGGCATTATGT
CGTTAACTCTTGTCGTCGCTCCTTTTCTGTTTTGCACACACACCCATTAG
CCTGCATTAACGCTGAGCGTTGTACAACCTTTGCAGGAGCACCTGCGCAG
CAGTCCGACAATGTGGCCAACGTTGTTCGGGCGCTGGCGAAGGTAGACCG
CGCAGCCTCCGCCTACGATCCACGGAGGTAATGCGCTGTTGTGCTAAATT
GTTTGTTAATCCTACTTCACACCTGCTTGGCGGCTGCCCTTGAGCCATTC
GTTTACGCCACGCCTAGTGCGCGAAAATCAAACTTGCTTGGTCACTTTTC
TGTGACGCCAAAGGACACGTTGCATATTGTTGGCACGATTCGCAGAATAG
TCAGTTTTATGGCCTACACCTGCAGATATTTTTCAGGTGTATGAGCACAG
CTCGTCAGAGAGAGGGGGGTTGCATTCGAAGAACAAAACAAACAGCTATG
ATATACAAAAACATATAGTCCGATACGGCATGCACTCTCCTGGGATATTC
AATACGCGCGCAAGCGCAATATCCTTTGGTTGAGTACGGTAAGGTGTGTT
GCGTGTCGTTTAGACTTCGGCATAGCACGCGCTTCGCCATCAGGCACCTC
CGCTTGAAACATCAAAAATTTAGTCCTGTACGACAAAAGTTCTGGCCAAC
CGGCTCCTACCGTTGCTGACGGCTCAACAAACAAATAGAAGACCCCGTCG
AATTCGTTCTCATCACGGTCTTCTGTTCGCGCTGGGGAAGCAGGATCGAT
AGCCTGCGGGAGGCAGATCTTAGCAGGGGCACCTCGCCGCGTGCGTTTGG
AGGCGTGCTTCTCGCTCGTTTCGACGTCCGGGTCGACCCTGCCGAGCAGA
AAGAGCTAGTGGCGCTCTTAGAAGACGAGGTATGTACACGACGGTATCGA
CGAAAAGTAGAGCAATGTTCATCGACATCCATTTTTTATCCACATAATAC
TACTGTACGAGCTCCCCGCAGAGATAGAGAGACACGGCATCGAACTATAA
TAGAACGTTGGTCGTCCACTGACCGCCCGAGACATGAATATTATTGCTCA
CCGGGGTGTAAATATAAATATCACCGTATATTTCTTTATACGTGTAAACC
GTACCACGTGCGTTTTGATCGCCTTCTATTAATACATGTATTCTATAGTT
TTTGTTAAATCTGAGTTTTGACAGCACAAAGTCACTCCCTGCTCTCTACC
CCCCCCCACCCCCTCGTTGTTTTTGCGACACGCGCAACAACGGTGGCGAC
AACGGTGGCGGCGCTGACGCTGCCAACGACGAACGGTGCTGTCAATGTCT
AAAACGAAAACGAAAACAGACCGGCACGGTAGACGTCGAGCGCTTCCGAG
TGTACTTTCTGAGTCTGATCCACGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11436:1081..4756+

>mRNA_S-dermatodea_contig11436.930.1 ID=mRNA_S-dermatodea_contig11436.930.1|Name=mRNA_S-dermatodea_contig11436.930.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at S-dermatodea_contig11436:1081..4756+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGATTGACCGAGTTCTGCGCAAATCACGGACCGTGGGCAACGTGCGATC
GTTAGACCCCAACCGCCCAGACCTCTTGGCTCGAGCAACACGGCTTTCAA
ACCTCTACGGCACCAGCCTCGACTCTGGGCTCGCTCGAAAAGGCGCCGGG
GAAAGGCCGTGTCGACAAAGAAGACACAAGCTCAGAGGATTGACCGAGTT
CTGCGCAAATCACGGACCGTGGGCAACGTGCGATCGTTAGACCCCAACCG
CCCAGACCTCTTGGCTCGAGCAACACGGCTTTCAAACCTCTACGGCACCA
GCCTCGACTCTGGGCTCGCTCGAAAAGGCGCCGGGGAAAGGCCGTGTCGA
CAAAGAAGACACAAGCTCAGCAATAAGCACGGCAGCGGCAGCCCCGGTGT
ATCTCGAGAGCAGAAGAGAAATCACGCCCCGAACGACATGACTCTGGGAC
GCAAAAAAAAAAAAATCCTACGGTCCGCCCTTGAAAAGGCTGGCGAGGCC
GCCCTGCGGTACACGAGAGAGGTTTCTGTGGGGATGAGAGCCTTTGACGG
GCCTCAGCTGGGACCGAAGGATGTCAAAGATGCACTGCTGCGGATATTTC
GAATTAGAATTTCTACACGCGAGGCTGCCGCCTTGATCACGCACTTCACC
AAGGTCAGACAACGAAACCACATGTTGCGGGGGTTGACAATAAGCACGGC
AGCGGCAGCCCCGGTGTATCTCGAGAGCAGAAGAGAAATCACGCCCCGAA
CGACATGACTCTGGGACGCAAAAAAAAAAAAATCCTACGGTCCGCCCTTG
AAAAGGCTGGCGAGGCCGCCCTGCGGTACACGAGAGAGGTTTCTGTGGGG
ATGAGAGCCTTTGACGGGCCTCAGCTGGGACCGAAGGATGTCAAAGATGC
ACTGCTGCGGATATTTCGAATTAGAATTTCTACACGCGAGGCTGCCGCCT
TGATCACGCACTTCACCAAGGTCAGACAACGAAACCACATGTTGCGGGGG
TTGAATCTGCGCATCGAACACGGGACTTTGCTTCACGCGATACAGCGGCT
TCGCCGGACGCTACTCACGAGGCACCCACTCCCAGCGATGGGTGGTGATG
AATCTGTGGCACTGCGTTTAATGAGTGGCTCTCGAAGTGGATCCGCGCTA
AGTGATCACCGGATTGGCGCACGGAGCCGCGGTAAAGTGGAGCCAACGGT
GAAAATGCCATCCTTCGCAGGTGTGCGTGCCCCACACTCGATGTTCCGTG
TAGGAGTGACAAGAAGAATCTGCGCATCGAACACGGGACTTTGCTTCACG
CGATACAGCGGCTTCGCCGGACGCTACTCACGAGGCACCCACTCCCAGCG
ATGGGTGGTGATGAATCTGTGGCACTGCGTTTAATGAGTGGCTCTCGAAG
TGGATCCGCGCTAAGTGATCACCGGATTGGCGCACGGAGCCGCGGTAAAG
TGGAGCCAACGGTGAAAATGCCATCCTTCGCAGGTGTGCGTGCCCCACAC
TCGATGTTCCGTGTAGGAGTGACAAGAAGATCCGACAATGTGGCCAACGT
TGTTCGGGCGCTGGCGAAGGTAGACCGCGCAGCCTCCGCCTACGATCCAC
GGAGTCCGACAATGTGGCCAACGTTGTTCGGGCGCTGGCGAAGGTAGACC
GCGCAGCCTCCGCCTACGATCCACGGAGCAGGATCGATAGCCTGCGGGAG
GCAGATCTTAGCAGGGGCACCTCGCCGCGTGCGTTTGGAGGCGTGCTTCT
CGCTCGTTTCGACGTCCGGGTCGACCCTGCCGAGCAGAAAGAGCTAGTGG
CGCTCTTAGAAGACGAGCAGGATCGATAGCCTGCGGGAGGCAGATCTTAG
CAGGGGCACCTCGCCGCGTGCGTTTGGAGGCGTGCTTCTCGCTCGTTTCG
ACGTCCGGGTCGACCCTGCCGAGCAGAAAGAGCTAGTGGCGCTCTTAGAA
GACGAGACCGGCACGGTAGACGTCGAGCGCTTCCGAGTGTACTTTCTGAG
TCTGATCCACGAAACCGGCACGGTAGACGTCGAGCGCTTCCGAGTGTACT
TTCTGAGTCTGATCCACGAA
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