mRNA_S-dermatodea_contig1143.925.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1143.925.1
Unique NamemRNA_S-dermatodea_contig1143.925.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Match: D7FYU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU6_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 8.040e-63
Identity = 101/127 (79.53%), Postives = 113/127 (88.98%), Query Frame = 1 
Query:  142 TAAAAAAPTKKK-SITVKYVQETPGGYICDVDVKNFKATTHHRIVMAKDEMDKYSELAGLKVEAKDLSTYTMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVQEKIVEICKEAPDLTE 519
            T AAAAAP KKK SITV++VQETP GYI  VDVKNFKATT+HRIVM+K+++ +YSELAG KVE  DL  Y MKYMLDKG+KLDNTEGMIEASVFPVNYFTLKQLSYFHDDV+EKIV +CKEAPDL+E
Sbjct:    7 TPAAAAAPIKKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVALCKEAPDLSE 133
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BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Match: A0A835YV54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV54_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.760e-24
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 1 
Query:   19 LLAALAGLCSVHAFNV----GVPLRTSSRQAGVHRFRSVSMSDKATAAAAAAPTKKKSITVKY--VQETPGGYICDVDVKNFKATTHHRIVMAKDEMDKYSELAGLKVEAKDLSTYTMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVQEKIVE 489
            LL   A +C   +F      GV  R +   +   R R++ MS+   + A A P    S+ VK   +QET GG+I  ++V  F+  T H+I++AK  +   SE  G  V+ + +  + +++M+DK + LDNTEGMI+A VFPVNYFT  QL+ FH ++ +K+ E
Sbjct:    9 LLTVAANVCPACSFQAWTRSGVG-RAAVASSAKCRTRALLMSEAPASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 170
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BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Match: W7TI06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI06_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.270e-19
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:  151 AAAAPTK-KKSITVKYVQETPGGYICDVDVKNFKATTHHRIVMAKDEMDKYSELAGLKVEAKDLSTY---TMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVQEKI 483
            AAAAPT+ ++ I +  V E+ GGY+  V+VKNFK  T H ++ +K+   +   LAG   +   +  Y     K+++ KGL L  TEGMI+A VFP+NYF++ QL+ F DD  E +
Sbjct:   57 AAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGV 171
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BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Match: A0A7S1K9Y0_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9Y0_9ALVE)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-14
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:  181 ITVKYVQETPGGYICDVDVK-NFKATTHHRIVMAKDEMDKYSELAGLKVEAKDLSTYTMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVQEKIVEICK 498
            I V+YV E  GG++ DV +      TT H + +     +     A  +V+ + L  Y  K+MLD+ + +DNTEGMI++SVFPVNYF+  Q+ Y H+D ++++ ++ +
Sbjct:  146 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVE 252
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BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Match: A0A0G4H3W5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3W5_VITBC)

HSP 1 Score: 78.2 bits (191), Expect = 1.150e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:  181 ITVKYVQETPGGYICDVDVK-NFKATTHHRIVMAKDEMDKYSELAGLKVEAKDLSTYTMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVQEKIVEICK 498
            I V+YV E  GG++ DV +      TT H + +     +     A  +V+ + L  Y  K+MLD+ + +DNTEGMI++SVFPVNYF+  Q+ Y H+D ++++ ++ +
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVE 571
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1143.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYU6_ECTSI8.040e-6379.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV54_9STRA3.760e-2437.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TI06_9STRA2.270e-1941.74Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1K9Y0_9ALVE2.640e-1436.45Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H3W5_VITBC1.150e-1336.45Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1143contigS-dermatodea_contig1143:1548..4943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002530.1
Exons5
Model size525
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1143.925.1prot_S-dermatodea_contig1143.925.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1143 1548..4943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924203.0665433-CDS-S-dermatodea_contig1143:1547..16101622924203.0665433-CDS-S-dermatodea_contig1143:1547..1610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 1548..1610 +
1694079089.7176616-CDS-S-dermatodea_contig1143:1547..16101694079089.7176616-CDS-S-dermatodea_contig1143:1547..1610Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 1548..1610 +
1622924203.0773597-CDS-S-dermatodea_contig1143:2331..24351622924203.0773597-CDS-S-dermatodea_contig1143:2331..2435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 2332..2435 +
1694079089.7279344-CDS-S-dermatodea_contig1143:2331..24351694079089.7279344-CDS-S-dermatodea_contig1143:2331..2435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 2332..2435 +
1622924203.0847442-CDS-S-dermatodea_contig1143:2990..30961622924203.0847442-CDS-S-dermatodea_contig1143:2990..3096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 2991..3096 +
1694079089.7354343-CDS-S-dermatodea_contig1143:2990..30961694079089.7354343-CDS-S-dermatodea_contig1143:2990..3096Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 2991..3096 +
1622924203.0941262-CDS-S-dermatodea_contig1143:3661..38351622924203.0941262-CDS-S-dermatodea_contig1143:3661..3835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 3662..3835 +
1694079089.746691-CDS-S-dermatodea_contig1143:3661..38351694079089.746691-CDS-S-dermatodea_contig1143:3661..3835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 3662..3835 +
1622924203.1061792-CDS-S-dermatodea_contig1143:4865..49431622924203.1061792-CDS-S-dermatodea_contig1143:4865..4943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 4866..4943 +
1694079089.7577705-CDS-S-dermatodea_contig1143:4865..49431694079089.7577705-CDS-S-dermatodea_contig1143:4865..4943Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1143 4866..4943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1143.925.1

>prot_S-dermatodea_contig1143.925.1 ID=prot_S-dermatodea_contig1143.925.1|Name=mRNA_S-dermatodea_contig1143.925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
MKFNGPLLAALAGLCSVHAFNVGVPLRTSSRQAGVHRFRSVSMSDKATAA
AAAAPTKKKSITVKYVQETPGGYICDVDVKNFKATTHHRIVMAKDEMDKY
SELAGLKVEAKDLSTYTMKYMLDKGLKLDNTEGMIEASVFPVNYFTLKQL
SYFHDDVQEKIVEICKEAPDLTEW*
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mRNA from alignment at S-dermatodea_contig1143:1548..4943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1143.925.1 ID=mRNA_S-dermatodea_contig1143.925.1|Name=mRNA_S-dermatodea_contig1143.925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3396bp|location=Sequence derived from alignment at S-dermatodea_contig1143:1548..4943+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTTCAACGGGCCGCTCCTTGCGGCTCTGGCGGGCTTGTGTTCGGT
TCATGCGTTCAACGTGAGCAACGTAACGCGCTTTTGGCCCGGCCGTGGTA
CATAGCCTGTGTACGGTGACTTTCGCGACCCTTCGCTAGGGTAGATGGCT
TGTTTGCGTCGTTGAAGCAGATTGTGGCGTGCATGCGAGGGTGACACGCG
GCTCCCCTGGGTGCACCTAATACGCATTCTTCGTCGTGTTTTGTTTGTCG
TCAGCAGTATCATACCTGGTACAATATAATAGGACATCGCACCGCCCGGC
ACGGCGTTGGTCTTCCTCAGCAGGGTCGGTACTCTCGAAGGCTGTGCTGA
CTCGTCGCAGTACCGATGCTTTGCCCGCTGCTCGCCATCGCGGGAATGGA
TTTCGTCAACGCTGATGTTCCTAGAATGCTTTCAGACGTCTCCGTGTCTG
ATCTTCATGTATGACACTACAAAGTACTATAATAACTGTCGTATAGAGAT
AGAGCCAACATGCAGCGGTCGTCCAGACCCCTGCAGCAGCTTCAGGCTGC
AGGTGGCTGTCATGCATCTTAACCCAGTCGCTGCCGTTATGGATAATCTT
GATGCAGATAGGATGGCATATCGTCGCTAAGTTGGCTTTGGAGAGGTTGA
TTCGCCACCCGTTCGCATGGTATCTCTACTCTCGACGCTACTATCATAAC
TATTTGCTCTGCGAGCATGTTGGTCGTGGATGCGTACCATAAGCTCTATT
ACTGCACCCGGTGGGCGTCGATGTGCGATTGCAGGTTGGTGTTCCTCTCC
GCACCTCTTCTAGGCAAGCCGGCGTACACCGTTTCCGATCTGTGTCCATG
TCGGACAAGGCGACAGCAGCAGCAGCTGCTGCACCAACGTGAGCGAGAAC
TTTGTTAACAAAACCGAATGCTATTTACGTGTAGATCAGCCGTAACAAAT
TCGCTCTCGTTTGTTTCTATGGTACGTATACTTCGTACATGTGTACATAC
GGTATTATTAATAGTGCTAGCTCTATAATAGTGCAGCAACACAGTAGTGC
TGAAATATAAAAAGGGCCACAAGCATGGCTCTCCAGCGTGAACATCTTGG
TACCAAGTTTTGGTTTTCAGCGAGGTTTCGTACGTGAACAAAGCGCTTTC
AGCTGACCTTGGCAAGCGGTGCTGCTCGCCTATCGAGGCGGGGGAGTGGA
CGAGTTGCGGCAAGTGCTTTGCCATATGTGCATAAAAGGGTGCTGGCGCT
TTCGTCGCTGCTGGGCGCCAACCCACTGCCGTGTGAACTTGTGGGGTTGG
AGGTGAATGCCGAGAACTCTTCACAAAACCTGTAACCGGTTAGTTGGCCC
TCTGTTCCGTGGGGTGGGAACGTCATTTCCCGGTTTCGGACGGATGGGCG
CTCTCAAGATGCTTGCCTTTTGTCGTCGTTTGCTCGTGTGCAGAAAAAAA
AAATCCATCACGGTGAAGTACGTGCAAGAGACTCCTGGCGGCTATATATG
TGATGTAGACGTGAAGAACTTCAAGGCCACCACACACCACCGGATAGTGG
TGAGAAGTTGGAGAAGCTAGAGACGCCAGAGTTTGGATGGTAAGCGTGTT
TTTGGCTGTCCGTGTGACCCTAGTTCGTGTAGCTTGTCTTCGTCGATGAG
CTAGACTGACGCGGTGGCCTGCGTAAACCGTGGTACTAAGCACCAGGATG
CAGCACTCCGTGCTCACAATACTAAGCGCGTGAGGCTTGATTGCTCTGAA
GTTGCCGAGGAGACTGGTACCTGGCCGCTTCTTTGGAAGGATGAACGGCC
GACTCTGCCGCACGCGCCTCGGGCTTTGCCCACCAATGAGGTGATCCGGG
TATGGCCCCACCAACGAAGCGCTCACCTTAATCGTGTGGACAAGATGTAA
CCCGCAGCTTCGGTGTTTTCCGGGGATGGCAAGGCGATCAACGCCCCGCA
AGTGTGTGTTTCGGCCGCTCGGGTAGAGGCAGCTAGAGACCCAGCCATGT
TATCTTTGTTGAGATCGCTTGACTAATGACAAGCAAGCTAGGGAGGTGTG
TGGGTGCGAACGTAAACCTGCACCCCCTGATTCTCTTTTTCTCGTCGCCG
TTTGGGATTTACAGATGGCCAAGGACGAGATGGATAAATATTCGGAGCTT
GCCGGATTGAAGGTGGAAGCCAAGGACTTGTCAACGTATACCATGAAGTA
CATGCTGGACAAAGGCCTAAAGCTGGACAATACCGAGGGCATGATTGAAG
CCTCCGTATTCCCCGTCAACTATTTCACCCTGAAACAGGTACGCACCTAC
AAGCAAATGCGACGTACTGTAGCGCCCTTGTGTTCTTTGCGAGAAGTTGA
CCCAGTAGCGTGATCACGGTTCAGGTCCCTACACGACCTACATGTGAGGC
ATGGCTCGTGCTGCGTTCAGGTGTCGTGTTCGTCGGTCAACTGTCTCGAA
AAACTATCAGAATGCAGGACTGGTAATCAGCTTACTGTGTTGATACCTTT
GTCAATCTCCTCGCCTTCCACTGGCGGGGGTGGTACAAGCTACTGCCAGT
GCGCCGGAGGCACCGTTCGTTGTCGCATGTGCACCCACCGGCTGAGCTAC
GTCGAGCATCGCTCGTGTGGCGACTTTAGTCAGTGTGGCACTATTTAGCA
AGCTGTGTGACGGTGAAACGAACCAGGCAGGCCCCAAACAAAAATGTGCT
GGCCTAGGGTGTGATGAGATGAGCTGCCGAAACCTTGCGCATCTTTGTAG
GAAACATTTCACGTTTCTCAAGTGTGCGCAGCGAATTTTGTGTAGACGCT
TGTTCTCTATCGGCAGCCTGCGATCCACCAAAATGAGTCTGCGGACATTT
TTACGCAATTGGAGTTTGTTCTATGGTGACCGTGTTTTTTTTCCCTGTCA
GATTAATCAACAATTTCGAGACACCGGCGCCTCTGGGCATTGAATGCACT
TTTCAAAACAATCGCACAAATGTCACCTCAGGACGAAGCTCCCGCTTCCA
TTCCGACACACCAATGCCTGTGCATGACAGCAGTGGAGCTCTAGATCACT
GCATTCGCTCAATCGAAAGCCGAACGCGGCGTGCTTTGTGGACCAGCAAC
TAGTATACTTGTAGGCCGCGCCCTCTTCGCGGTGCTTATTGGCCACTTTA
CGTTGCTCTACTTTGTTGGGAACGAAGCGGGTACCGGGGGCAATAATTTT
ACTGGGGGGAAAAATAACAGGTCACCTGATTGTATCCCTGACCAAGTATT
GCAGCAACTTCCTGGAGATATTGGAGCCCTAAACTCCCCACTACTGCAAC
GTTCTGTTTCCTTCGCAGCTGTCGTACTTCCACGATGATGTGCAAGAGAA
GATAGTGGAAATATGCAAGGAGGCACCGGACCTGACGGAGTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1143:1548..4943+

>mRNA_S-dermatodea_contig1143.925.1 ID=mRNA_S-dermatodea_contig1143.925.1|Name=mRNA_S-dermatodea_contig1143.925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig1143:1548..4943+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTTCAACGGGCCGCTCCTTGCGGCTCTGGCGGGCTTGTGTTCGGT
TCATGCGTTCAACATGAAGTTCAACGGGCCGCTCCTTGCGGCTCTGGCGG
GCTTGTGTTCGGTTCATGCGTTCAACGTTGGTGTTCCTCTCCGCACCTCT
TCTAGGCAAGCCGGCGTACACCGTTTCCGATCTGTGTCCATGTCGGACAA
GGCGACAGCAGCAGCAGCTGCTGCACCAACGTTGGTGTTCCTCTCCGCAC
CTCTTCTAGGCAAGCCGGCGTACACCGTTTCCGATCTGTGTCCATGTCGG
ACAAGGCGACAGCAGCAGCAGCTGCTGCACCAACAAAAAAAAAATCCATC
ACGGTGAAGTACGTGCAAGAGACTCCTGGCGGCTATATATGTGATGTAGA
CGTGAAGAACTTCAAGGCCACCACACACCACCGGATAGTGAAAAAAAAAA
TCCATCACGGTGAAGTACGTGCAAGAGACTCCTGGCGGCTATATATGTGA
TGTAGACGTGAAGAACTTCAAGGCCACCACACACCACCGGATAGTGATGG
CCAAGGACGAGATGGATAAATATTCGGAGCTTGCCGGATTGAAGGTGGAA
GCCAAGGACTTGTCAACGTATACCATGAAGTACATGCTGGACAAAGGCCT
AAAGCTGGACAATACCGAGGGCATGATTGAAGCCTCCGTATTCCCCGTCA
ACTATTTCACCCTGAAACAGATGGCCAAGGACGAGATGGATAAATATTCG
GAGCTTGCCGGATTGAAGGTGGAAGCCAAGGACTTGTCAACGTATACCAT
GAAGTACATGCTGGACAAAGGCCTAAAGCTGGACAATACCGAGGGCATGA
TTGAAGCCTCCGTATTCCCCGTCAACTATTTCACCCTGAAACAGCTGTCG
TACTTCCACGATGATGTGCAAGAGAAGATAGTGGAAATATGCAAGGAGGC
ACCGGACCTGACGGAGTGGTGACTGTCGTACTTCCACGATGATGTGCAAG
AGAAGATAGTGGAAATATGCAAGGAGGCACCGGACCTGACGGAGTGGTGA
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