mRNA_S-dermatodea_contig11417.916.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11417.916.1
Unique NamemRNA_S-dermatodea_contig11417.916.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11417.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11417contigS-dermatodea_contig11417:3494..4956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.2794828-CDS-S-dermatodea_contig11417:3493..36201622924202.2794828-CDS-S-dermatodea_contig11417:3493..3620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11417 3494..3620 -
1694079089.1080575-CDS-S-dermatodea_contig11417:3493..36201694079089.1080575-CDS-S-dermatodea_contig11417:3493..3620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11417 3494..3620 -
1622924202.29063-CDS-S-dermatodea_contig11417:4684..49561622924202.29063-CDS-S-dermatodea_contig11417:4684..4956Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11417 4685..4956 -
1694079089.1163938-CDS-S-dermatodea_contig11417:4684..49561694079089.1163938-CDS-S-dermatodea_contig11417:4684..4956Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11417 4685..4956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11417.916.1prot_S-dermatodea_contig11417.916.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11417 3494..4956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11417.916.1

>prot_S-dermatodea_contig11417.916.1 ID=prot_S-dermatodea_contig11417.916.1|Name=mRNA_S-dermatodea_contig11417.916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
RRLPARGALVPPSNLTSLDGGSAVPESSMFLIASAAVFLGHRAQRCSATS
VIPPAFVPRPCFGRGVEALTSERRGGWDSLGTAVGTCANRRSRTPRTLVV
SATASSSTPTSAEGAAGGQSDATGSDGTGERRR
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mRNA from alignment at S-dermatodea_contig11417:3494..4956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11417.916.1 ID=mRNA_S-dermatodea_contig11417.916.1|Name=mRNA_S-dermatodea_contig11417.916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1463bp|location=Sequence derived from alignment at S-dermatodea_contig11417:3494..4956- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCCTGCCCGCCCGCGGTGCCTTGGTCCCACCCAGCAACTTGACGAG
CCTTGACGGTGGCAGTGCTGTTCCCGAGAGCAGCATGTTCTTGATTGCTT
CAGCCGCTGTGTTCCTCGGCCATCGGGCCCAGCGATGCTCCGCAACGTCA
GTGATTCCGCCAGCTTTCGTACCGCGGCCCTGCTTCGGCCGAGGGGTAGA
GGCGCTGACCTCGGAGAGGAGGGGGGGTTGGGATTCGCTGGGAACTGCAG
TGGGGACTTGTGCTAATCGCAGGTGCAGCGTTGTTTACGAGAGGGATCCC
GCTTCGCTTGTACTATCTATCTATGATGATATCTGTTGGTATAATATCTG
CACTGACGTTGTTGGTACGGTACCTTTATAGTACTAGCTCTATAAAATGT
ATGATACCCCTAAAGATGTGTCGCGTGCCCCGTCGAAAATCATGAGCGAA
GTGCAAGTGGTCGCCCCGCTCGAAAGATCATTTATAAAAACAAAATCTAG
TTCCCATGTACATCCCTAACTCACAAGCACACTGGTTCAGGGGAAACTGA
GATCATTGTGATAACACGTTTTTTATAACGTATTTTTTTCGCAATTTCCA
TGTTTCTTTTTGCTGGACCCCAACCGGCGGAATGTATTCGTGGGCCCGCT
TACACAAGGAGCTCGTTCCTCACGAGCCGGTGTGCGCCCGACTATGCACG
GTACAGCTGCTGCAGCCCCTTCTATCTGCTGGTGCCGTGAGAGCTCTAGA
GCTACAGCTTTTTCTTGATTAATTAATGTCAGAAAGGCAAGGGCTGTCAT
AATCCATTACTTGCATGACATGATATGATACTTGTACTTGTTGCAAGGGT
CCTGGGCACGCAATAGGTCCAGTCTGTGTTCAGCTCGCTCCCTCCTGGTA
GGAAGTATAATATTCTACTGTAGTATATCACCGCTGCTTAGCGTTTGGAT
GCCGATCAGATAACGGCGCTGGCGTCTTTCACCTTCAATGCTTGTACGTG
CGATAGACATACTTTGCCCTCGATTAACGTGTTTGGTTCCCGCTCGTTTC
ATCTCCCAGCAATGGTAAGGACACCGATTCGAAGAGATGGCCATGCTTAT
GATTCGGCGCGCAGCTTGTTTCCGTTTCAAGTCCCCCCGCCCTGCACCCC
TGCACCCCTGCACCCCTGCAATGCTTCGGGGCATTGCTTTGTGCGGCGTT
CTTAGCATGGCATTTCGTGTGCGTGGCGTCTTTTCCCTCAATGCCCATGA
CGATACCGCGATCCACTCCTATGCATATTTGCTGAACTGTTTCATGTTGA
GATATTATATCCTGCCTGTACACAACATGCATTAAGGTCTAGAACTCCAA
GAACCTTGGTGGTATCAGCGACCGCGAGCTCGTCTACGCCAACCTCAGCC
GAAGGCGCCGCCGGGGGGCAAAGCGATGCGACGGGGAGCGATGGTACCGG
CGAGCGGCGTCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11417:3494..4956-

>mRNA_S-dermatodea_contig11417.916.1 ID=mRNA_S-dermatodea_contig11417.916.1|Name=mRNA_S-dermatodea_contig11417.916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig11417:3494..4956- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCCTGCCCGCCCGCGGTGCCTTGGTCCCACCCAGCAACTTGACGAG
CCTTGACGGTGGCAGTGCTGTTCCCGAGAGCAGCATGTTCTTGATTGCTT
CAGCCGCTGTGTTCCTCGGCCATCGGGCCCAGCGATGCTCCGCAACGTCA
GTGATTCCGCCAGCTTTCGTACCGCGGCCCTGCTTCGGCCGAGGGGTAGA
GGCGCTGACCTCGGAGAGGAGGGGGGGTTGGGATTCGCTGGGAACTGCAG
TGGGGACTTGTGCTAATCGCAGCGCCGCCTGCCCGCCCGCGGTGCCTTGG
TCCCACCCAGCAACTTGACGAGCCTTGACGGTGGCAGTGCTGTTCCCGAG
AGCAGCATGTTCTTGATTGCTTCAGCCGCTGTGTTCCTCGGCCATCGGGC
CCAGCGATGCTCCGCAACGTCAGTGATTCCGCCAGCTTTCGTACCGCGGC
CCTGCTTCGGCCGAGGGGTAGAGGCGCTGACCTCGGAGAGGAGGGGGGGT
TGGGATTCGCTGGGAACTGCAGTGGGGACTTGTGCTAATCGCAGGTCTAG
AACTCCAAGAACCTTGGTGGTATCAGCGACCGCGAGCTCGTCTACGCCAA
CCTCAGCCGAAGGCGCCGCCGGGGGGCAAAGCGATGCGACGGGGAGCGAT
GGTACCGGCGAGCGGCGTCGCGTCTAGAACTCCAAGAACCTTGGTGGTAT
CAGCGACCGCGAGCTCGTCTACGCCAACCTCAGCCGAAGGCGCCGCCGGG
GGGCAAAGCGATGCGACGGGGAGCGATGGTACCGGCGAGCGGCGTCGC
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