mRNA_S-dermatodea_contig11414.915.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11414.915.1
Unique NamemRNA_S-dermatodea_contig11414.915.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: D8LIP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP0_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 2.840e-146
Identity = 210/219 (95.89%), Postives = 218/219 (99.54%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            MTEAVTGAVLTIMKS+DEIDLHMVEIMQMRHKAGTDS LI+G+VMDHGARHPDMPR+LKNCHILTCNVSFEYEKTE+QSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFV+INQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISE+MLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQ+
Sbjct:  172 MTEAVTGAVLTIMKSRDEIDLHMVEIMQMRHKAGTDSVLIKGLVMDHGARHPDMPRSLKNCHILTCNVSFEYEKTEVQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVIINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEEMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQI 390
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A7S2V196_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V196_9STRA)

HSP 1 Score: 352 bits (902), Expect = 1.250e-116
Identity = 170/220 (77.27%), Postives = 196/220 (89.09%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDE-IDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            +TE VT A L +  SKD+ IDLHMVEIM M H+A  DS+L++G+V+DHGARHPDMPR L+ CH+ TCNVSFEYEKTE+ SGFFYS+A++REKLVESERKFTDEKV  VIEFKR VCKEGESFV+INQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVN  +D++ D+LGWA +V+E+TLG+DKFTFVE VR+PRSCTILVKGPN+HTI QV
Sbjct:  169 LTEVVTDATLCVRTSKDQPIDLHMVEIMHMPHRAAHDSRLVKGLVLDHGARHPDMPRRLEKCHVFTCNVSFEYEKTEVSSGFFYSSAEQREKLVESERKFTDEKVKVVIEFKRSVCKEGESFVIINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNCVDDLTPDVLGWADEVYEQTLGEDKFTFVEGVRNPRSCTILVKGPNEHTINQV 388
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A4D9CV25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV25_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.310e-112
Identity = 160/201 (79.60%), Postives = 183/201 (91.04%), Query Frame = 1 
Query:   55 IDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            IDLHMVEIM M HK G+DS+ +RG+V+DHGARHPDMP+ L  CHI TCNVSFEYEK+E+ SGFFYS A+ERE+LV SER+FTDEKV QVI+FKRKVCKEGESFVVINQKGIDPLSLDMFAKEGI ALRRAKRRNMERLTLACGG+ +NS ED+SEDMLGWAG+V+E+TLG++K+TFVEDVRH RSCTIL+KGPN HTI Q+
Sbjct:  189 IDLHMVEIMHMTHKLGSDSRFVRGLVLDHGARHPDMPKALNRCHIFTCNVSFEYEKSEVASGFFYSNAEERERLVASERRFTDEKVRQVIDFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGILALRRAKRRNMERLTLACGGLPINSVEDLSEDMLGWAGRVYEQTLGEEKYTFVEDVRHARSCTILIKGPNQHTIDQI 389
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: W7TJM7_9STRA (T-complex protein 1 subunit zeta isoform a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJM7_9STRA)

HSP 1 Score: 340 bits (872), Expect = 5.810e-109
Identity = 159/201 (79.10%), Postives = 183/201 (91.04%), Query Frame = 1 
Query:   55 IDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            IDLHMVEIM M HK G+DS+ +RG+V+DHGARHPDMP+ L  CHI TCNVSFEYEK+E+ SGFFYS A+ERE+LV SER+FTD+KV QVI+FKRKVCKEGESFVVINQKGIDPLSLDMFAKEGI ALRRAKRRNMERLTLACGG+ +NS ED+SEDMLGWAG+V+E+TLG++K+TFVEDVRH RSCTIL+KGPN HTI Q+
Sbjct:  189 IDLHMVEIMHMTHKLGSDSRFVRGLVLDHGARHPDMPKALNRCHIFTCNVSFEYEKSEVASGFFYSNAEERERLVASERRFTDDKVRQVIDFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGILALRRAKRRNMERLTLACGGLPINSVEDLSEDMLGWAGRVYEQTLGEEKYTFVEDVRHARSCTILIKGPNQHTIDQI 389
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: K3WHV4_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3WHV4_GLOUD)

HSP 1 Score: 325 bits (833), Expect = 1.940e-106
Identity = 148/221 (66.97%), Postives = 197/221 (89.14%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEG--ESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            +TE VT AVLTI +    +DLHM+EIM M H++ +D++LI+G+V+DHG+RHPDMP +L+NC+I+TCNVS EYEK+E+ SGFFY++A++REK+VE+ERKFTD+KV Q+IE KR++C +   ++FV++NQKGIDPLSLDM AKEGI ALRRAKRRNMERLTLACGGM +NSTED+ E MLGWAG+V+E+TLG++++TFVEDV+HP+SC+IL+KGPN+HTIAQ+
Sbjct:  157 LTEIVTDAVLTIAQPGRPVDLHMIEIMHMMHQSSSDTRLIKGLVLDHGSRHPDMPTSLENCYIMTCNVSLEYEKSEVNSGFFYNSAEQREKMVEAERKFTDDKVKQIIELKRELCTDENKKNFVIVNQKGIDPLSLDMLAKEGILALRRAKRRNMERLTLACGGMPINSTEDMDESMLGWAGKVYEQTLGEERYTFVEDVKHPQSCSILIKGPNEHTIAQI 377
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A485LAF2_9STRA (Aste57867_17113 protein n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LAF2_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.220e-105
Identity = 152/221 (68.78%), Postives = 191/221 (86.43%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKE--GESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            +TE VT AVLTI      +DLHM+EIM M H++  D++LI+G+V+DHG+RHPDMP  L+NC I+TCNVS EYEK+E+ SGFFY++A +REK+VE+ERKFTD+KV Q+IE KR VC E  G +FV+INQKGIDPLSLDM AKEGI ALRRAKRRNMERLTLACGGMA+NST+D+  +MLGWAG+V+E+TLG++ +TFVEDVRHP+SC+IL+KGPN+HTIAQ+
Sbjct:  171 LTEIVTDAVLTIATPGRPVDLHMIEIMHMVHQSSADTRLIKGLVLDHGSRHPDMPSELENCFIMTCNVSLEYEKSEVNSGFFYNSADQREKMVEAERKFTDDKVKQIIELKRHVCTEENGYNFVIINQKGIDPLSLDMLAKEGILALRRAKRRNMERLTLACGGMAINSTDDMDPNMLGWAGRVYEQTLGEEHYTFVEDVRHPQSCSILIKGPNEHTIAQI 391
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BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: H3G985_PHYRM (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=H3G985_PHYRM)

HSP 1 Score: 323 bits (827), Expect = 2.250e-105
Identity = 148/221 (66.97%), Postives = 196/221 (88.69%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEG--ESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            +TE +T AVLTI   +  IDLHM+EIM M H++ +D++L++G+V+DHG+RHP+MP +L+NC+I+TCNVS EYEK+E+ SGFFY++A +REK+VE+ERKFTD+KV Q+IE KR+VC E   +SFV+INQKGIDPLSLDM AKEGI ALRRAKRRNMER+TLACGGM +NST+D+ E MLG+AG+V+E+TLG++++TFVEDV+HP+SCTIL+KGPN+HTIAQ+
Sbjct:  170 LTEIITDAVLTIAAPERPIDLHMIEIMHMMHQSSSDTRLVKGLVLDHGSRHPEMPTSLENCYIMTCNVSLEYEKSEVNSGFFYNSADQREKMVEAERKFTDDKVRQIIELKREVCTEENKKSFVIINQKGIDPLSLDMLAKEGILALRRAKRRNMERITLACGGMPINSTDDMDESMLGYAGKVYEQTLGEERYTFVEDVQHPKSCTILIKGPNEHTIAQI 390
[Close]
BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A6V1PFD7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PFD7_HETAK)

HSP 1 Score: 323 bits (827), Expect = 2.310e-105
Identity = 155/219 (70.78%), Postives = 186/219 (84.93%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            +TEAVT A L +      +DLHMVEI+ M H+   D++L+RG+V+DHG RHPDMP  L+NC +LT NVSFEYEKTE+QSGFFYS+A++RE++VE+ERKFTD+KV  VIEFKR VCK GESFVVINQKGIDPLSLDMFAKEGI A+RRAKRRNMERLTLACGG  VN  ED++EDMLG+AG+V E TLG++K+TFVEDV +P+SCTIL+KGPN HTI QV
Sbjct:  169 ITEAVTDACLCVRAPGQPLDLHMVEILHMAHRDAADTRLVRGMVLDHGPRHPDMPTKLENCRVLTVNVSFEYEKTEVQSGFFYSSAEQRERMVEAERKFTDDKVKAVIEFKRAVCKPGESFVVINQKGIDPLSLDMFAKEGIMAIRRAKRRNMERLTLACGGHPVNCVEDMTEDMLGYAGKVWETTLGEEKYTFVEDVANPQSCTILIKGPNQHTITQV 387
[Close]
BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A7S2LGD8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LGD8_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.000e-104
Identity = 151/219 (68.95%), Postives = 183/219 (83.56%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            MT AV  AV  I +    +DLHMVEIM+M +K  TDS+ + GIV+DHG+RHPDMP+ L+NC I+TCNV+FEYEKTE+QSGF+YSTA+EREKLVESERK+ DE+  QV+ FKR VC  GE FV+I+QKGIDPLSLD+FAKEGI ALRRAKRRNMERLTLACGG  ++S ED+ + MLGWAG+V E TLGDDKFTFVE+ +HP+SCTIL++GPN HTI Q+
Sbjct:  100 MTNAVVDAVQCIAEPDKPVDLHMVEIMEMPNKMATDSRFVNGIVLDHGSRHPDMPKLLENCFIMTCNVTFEYEKTEVQSGFYYSTAEEREKLVESERKWLDERCRQVVNFKRSVCTNGEGFVIIDQKGIDPLSLDIFAKEGIIALRRAKRRNMERLTLACGGHPIHSVEDLDKSMLGWAGKVSEVTLGDDKFTFVEECKHPKSCTILIQGPNKHTIDQI 318
[Close]
BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Match: A0A6S8ZRG3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZRG3_9STRA)

HSP 1 Score: 315 bits (807), Expect = 2.160e-104
Identity = 149/222 (67.12%), Postives = 183/222 (82.43%), Query Frame = 1 
Query:    1 MTEAVTGAVLTIMK---SKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGARHPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFTDEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKRRNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRHPRSCTILVKGPNDHTIAQV 657
            MTEAV  A+  I     +   IDL+M+EIM M  K GTDS+ + G+V+DHG RHPDMP+ L NCHI+TCNV+FEYE+TE+QSGFFY TA EREKLVESERK+ DE+  QV++FKR+VCK+GESFV+INQKGIDPLSLD+FAKEGI  LRRAKRRNMER+TLACGG  ++S ED+ E  LGWA +V E TLG+DKFTFVE+ +HP+SCT+L++GPN HTIAQ+
Sbjct:    5 MTEAVVDAIQCIAPPDTTDSPIDLNMIEIMAMPRKMGTDSRFVNGLVLDHGGRHPDMPKVLNNCHIMTCNVTFEYERTEVQSGFFYKTADEREKLVESERKWLDERCKQVVDFKRRVCKDGESFVMINQKGIDPLSLDIFAKEGILCLRRAKRRNMERMTLACGGSPIHSVEDLDESQLGWANKVSEVTLGEDKFTFVEECKHPKSCTLLLQGPNTHTIAQI 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11414.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP0_ECTSI2.840e-14695.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V196_9STRA1.250e-11677.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CV25_9STRA1.310e-11279.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TJM7_9STRA5.810e-10979.10T-complex protein 1 subunit zeta isoform a n=1 Tax... [more]
K3WHV4_GLOUD1.940e-10666.97Uncharacterized protein n=4 Tax=Oomycota TaxID=476... [more]
A0A485LAF2_9STRA1.220e-10568.78Aste57867_17113 protein n=17 Tax=Saprolegniaceae T... [more]
H3G985_PHYRM2.250e-10566.97Uncharacterized protein n=23 Tax=Oomycota TaxID=47... [more]
A0A6V1PFD7_HETAK2.310e-10570.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LGD8_9STRA1.000e-10468.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6S8ZRG3_9STRA2.160e-10467.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11414contigS-dermatodea_contig11414:263..5165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.8
Seed ortholog evalue6.2e-117
Seed eggNOG ortholog2880.D8LIP0
Preferred nameCCT6
KEGG koko:K09498,ko:K19401
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0016020,GO:0032991,GO:0042221,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046686,GO:0050896,GO:0051082,GO:0061077,GO:0101031
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0359@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Hectar predicted targeting categoryother localisation
Exons6
Model size657
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11414.915.1prot_S-dermatodea_contig11414.915.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11414 263..5165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.1769514-CDS-S-dermatodea_contig11414:262..3311622924202.1769514-CDS-S-dermatodea_contig11414:262..331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 263..331 +
1694079089.0407088-CDS-S-dermatodea_contig11414:262..3311694079089.0407088-CDS-S-dermatodea_contig11414:262..331Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 263..331 +
1622924202.195884-CDS-S-dermatodea_contig11414:1172..12821622924202.195884-CDS-S-dermatodea_contig11414:1172..1282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 1173..1282 +
1694079089.0591655-CDS-S-dermatodea_contig11414:1172..12821694079089.0591655-CDS-S-dermatodea_contig11414:1172..1282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 1173..1282 +
1622924202.2051375-CDS-S-dermatodea_contig11414:1856..19861622924202.2051375-CDS-S-dermatodea_contig11414:1856..1986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 1857..1986 +
1694079089.0710304-CDS-S-dermatodea_contig11414:1856..19861694079089.0710304-CDS-S-dermatodea_contig11414:1856..1986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 1857..1986 +
1622924202.2171419-CDS-S-dermatodea_contig11414:3813..39511622924202.2171419-CDS-S-dermatodea_contig11414:3813..3951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 3814..3951 +
1694079089.0819325-CDS-S-dermatodea_contig11414:3813..39511694079089.0819325-CDS-S-dermatodea_contig11414:3813..3951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 3814..3951 +
1622924202.2290964-CDS-S-dermatodea_contig11414:4460..45561622924202.2290964-CDS-S-dermatodea_contig11414:4460..4556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 4461..4556 +
1694079089.0909886-CDS-S-dermatodea_contig11414:4460..45561694079089.0909886-CDS-S-dermatodea_contig11414:4460..4556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 4461..4556 +
1622924202.2426662-CDS-S-dermatodea_contig11414:5051..51651622924202.2426662-CDS-S-dermatodea_contig11414:5051..5165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 5052..5165 +
1694079089.0998073-CDS-S-dermatodea_contig11414:5051..51651694079089.0998073-CDS-S-dermatodea_contig11414:5051..5165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11414 5052..5165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11414.915.1

>prot_S-dermatodea_contig11414.915.1 ID=prot_S-dermatodea_contig11414.915.1|Name=mRNA_S-dermatodea_contig11414.915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
MTEAVTGAVLTIMKSKDEIDLHMVEIMQMRHKAGTDSKLIRGIVMDHGAR
HPDMPRNLKNCHILTCNVSFEYEKTEIQSGFFYSTAQEREKLVESERKFT
DEKVMQVIEFKRKVCKEGESFVVINQKGIDPLSLDMFAKEGIFALRRAKR
RNMERLTLACGGMAVNSTEDISEDMLGWAGQVHEETLGDDKFTFVEDVRH
PRSCTILVKGPNDHTIAQV
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mRNA from alignment at S-dermatodea_contig11414:263..5165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11414.915.1 ID=mRNA_S-dermatodea_contig11414.915.1|Name=mRNA_S-dermatodea_contig11414.915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4903bp|location=Sequence derived from alignment at S-dermatodea_contig11414:263..5165+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCGAGGCGGTGACCGGGGCCGTGCTGACCATCATGAAGTCCAAGGA
CGAGATCGACTTGCACATGGTGAGTTTCGGCTTGAGGGGGTTCGGGAGTG
GGGGGTTGATGCGATGGGTTGACGAGGGAGGCGGGGGAGGGGGGGCGGTA
CCGGAAGCTTCTTTCTAGTTCTTGATGTTTCCCCGGACCCTACCTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTCCTGGATATATTTTT
GTTTTGTTTTTCATGGGACACTCTGATATATTCAACTGTAATCAGTATCA
TGTGGTGCATATATTGTCGCGAAGATTTTCGCAGTTACCTGTAGAAGCAC
TTTTTTTTTTTTTTTTATGCGTACGGGCGGGGTAGCGAGTAGCGAGTGTT
TACGTTTGTATTCCAGTCGGTGTAGTTTTAACACAAACGATTACAAGTCA
GTTCCCCCTCGAATCATTTAAGAACTTGTTGCTACTATTATTAATTGTAC
AGTATGGCTAGATTTTGACATGTATGGATCGGTTCGTGCGAGAGCAACAG
CAACAGCAACAAAAAAACGGGTTATCTCACACACACACACACACAACACA
CACACACACCCACACGCGCGCGCGCGTGCACCTCTGCTGGCGACGTTATT
TTAACTGTTAACAAACCGCACGGTTGAGGCCCGTTGCCTTTTTGTTTTTG
CGCTCGCCTGTTTTTGTTGCATGGTGGGGTCACAGCAGTTATCGCCCTAA
CCCCCCCCCCCCCCTTTTATGTTGTCCGGGCTCGACTTTTCGCTGCTCTC
GTACCCCCCCCCCCCCCCCCCCCCCCTTCCCTTGCGAGGTCTATGGTCTA
ACGACTACGGCATGCACGATCAATGAGTACACCCCCCCTTCCCTTCGCCC
CCCCTTGCAGGTGGAGATCATGCAGATGCGGCACAAGGCCGGTACGGACA
GCAAGCTCATCAGGGGCATCGTCATGGACCACGGCGCGAGGCACCCCGAC
ATGCCCCGCAACCTGAAGAAGTGAGGAGAGAGGCGTTCCGTCCGGTCGCC
CACTTTTTTTTTTTTTTTTTTTTTGTGGTGTGAATGAAGCCCATCCATCC
CCCCGATCGTCTTTTTTTTTTCTTCCGCCCCCACACCTCCTAAAAAAACT
CAAATGTTTTGTACAATATGAAGCGAGCGTTGGGGTCCTGTATTTTCTAT
TTTCGAAGAGAGGAAAGATAGTCCAAGCAACATGTATGGAGGCGTGTACG
TTACGCGTGATGCTACTGTACTTGTATGGGTTTGTGTCGTGTCTTGTCTG
ATGCTATATGGGATCATTGTGCAAATGTGTTTTTTTATTTGAATTTTGTG
TGGGAGGTGTATACCTTGGCGGTGTGTAACTCTGATGTGCTTCGCAGAGC
CAATCAAAATTTTCGCCGTATAACTTGCGTAAATGTTGTGATTTTAGCGT
ACAGTGTATGTAGTGGTAAATGTTTTTTTTTCTTGGGTCTTACTGAAAGT
ATTATGCTCATCCTTGCTATGATACTGATCTATGTATCGCAATCGCCATC
GCCATCGCTTTCGGTGTCGGTTTATCTGTTCTCGGCGGCTCCAGCTGCCA
CATCCTGACGTGCAACGTTTCGTTCGAGTACGAGAAGACGGAGATCCAGT
CCGGCTTCTTCTACTCCACCGCGCAGGAGAGGGAGAAGCTCGTGGAGAGC
GAGCGCAAGTTCACCGACGAGAAGGTGTGTGTTTTTGTGTGTGGAGGGAA
GGGGGAAGGGGGGGGCGTCGTTGTAGTGCGTGGCTATACCACGACAGGCA
TGCAAAACATGACAGGGGTAGTTGTGCTTGTATTGTTTGGGTTTAGTAGT
GGCCATTGTAGCAGGACGAGCACAACGGTTCAATCGAAACAAGACGGACA
CATCAATGCGGCAAAACAAAACCATGTACTATTAGTACTGTATCATAACA
AGGAAACATTAAATGTGGAAAAAGGGTGTATTATAGTGAAGAGACACGTT
TTCATCTTCTTTGGGCCACAAAGAACATCAAAAAGCTACACTATTATACT
TGTATTGTATGGGTTTAGTAGTGGCCATTGTAGCAGGACAAGCACAACGG
TTCAATCGAAACAAGACGGACACATCAATGTGGCAAAACAAAACCATGTA
CTACTAGAGTATCATAACAACGAAACATCAATGTGGAAAAGGTATGTATT
AATAGTGTAGAGACACGTTTATATCTTCTTTGGGCCACAAAGAACATCAA
AAGCTACACCATTATACCAAGATTCATATCGCTTAGGGCATGACATAAAT
GGTCGCATTTATACTGTACACAAGGTAAGCCTCCATTGGGTGTATTAATA
GCTTGGACCATCTTCCCTTCTAAAAAACGTGGGGCCCCAACGCTCGCTCT
GTCTTTGAAATTGATGCCCCCCCACGTAGACGGAGATTTAGGAAGGTAGG
CGAGGAAGACGAGGACAAGTTAAAATGCGATTGCGGCTCGGAGGAGTGTG
AAAAACGTGTCCAATGTAGTGCCGGAATGCCGGTTTTAGGAAAAATAGAG
ATTTGTATATGGCTGAGCTGGGGAAAATTGAAGGTTGTGACTGCGAGTTT
TTTTAAGCAATTGGACAGCCAGTCGAAGGCGGTAGCTATACACTGGGGGG
TGGGAAGTGGCCTGAGAAGGCGAGAAGTGATGAAGACAGGATAGGAAAAA
AGACATTGCGCCACCTTTGGTGAAGTAGAAAGGAACGATTGGCCATCGGC
GATAGATAGATCGATCCTGTGGGAACAATGTCCCGTCCTCTCGAGGACGC
GTGGTCAATGGTCTAAAAGCTAAGGCATGCAAACCATCAGTACGCCCCCC
CTAAAAAAATGAAGATTTCAGAAACATAGAGCGAGCGTTGGGGTCCCACC
TTTTCAAGGGGGAAGATGGTCCAAGGTACATCTATGGAGGCTGGCTCAGT
TGTTACATATGATGTTATGGCGACTTTATCATGTATGATGTTATACGGTT
GTGTTATCATACGGGACATGAGTCTTTGTCCTGAGGTATATCCTGGTGAA
ATATCCTTGCTGCGTTTTTATGAGCCACTAATATTATATGCTCCCTTCCC
ACCATACATTTTTATTGCATCTATTATCTTGATTGAGCCTTTTTGTTCTA
TTCTTTGGTGAGTTTTACATAGTACACCCATACTGCCTTTGTCTGATTGT
TGTGAAATGATCTACTCAGTACATCAGCCACACACTACCCTCCCCACCTT
GCCCCACTCCCCACCACATTNNNNNNNNNNAGTTGGCTCCTGGAGGCAAG
GAGAAGTAAGTTCAGAGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTT
TGGTTTTGGTTTTGTTTTTGTTTTTGTTGTTGTTTTGGTTTTTTTTTGTT
TGTTTTTTTTTTTTTTTTTTTTTTGTGGGTTTTTTATACTACACCCATTC
TTCCTTTGTTTGTTTGTTTTGAAATGATCTCCTCAATACCCCCCCCCCCC
CCCCCCCCCCCTCCGGGACCATGAATTACATCGTATGATATATTATAATA
GGTGATGCAGGTGATCGAGTTCAAGAGGAAGGTGTGCAAGGAGGGCGAGT
CGTTTGTCGTTATCAACCAGAAGGGAATTGACCCGCTATCTCTCGACATG
TTCGCGAAGGAGGGAATCTTCGCGCTCAGGAGGGCTAAGGTGCGCGCGTG
CGCGCAGGTGGCTTTTTTTTTTTTTTTGGGGCCACTCTTGATTGATGTTG
TTAATTGAATTTATTATTGATTTTTTCTGTAACACTTGCAACCGATCGGG
CTCGCCAACGGTCTGCCGATCCTGCCCGCTCGTGGTCGGATTAGAAATCG
AGAAAAAAGGATTTAAAAAATAAAACTCAAAACGAATTTGCGATACATCC
GTTCAAGTACTTGTACGCAGAAGAAGGAATTCACGCAATGCTCGGAAAGA
AAGGGAACGTGCCTCGGAAACTTGGGTTCTGCAAGAAACTCTTTACAAAA
GTTTGTGCTGTGCTCGAGCCACCACCGTCGCCGTTGCCATCGCGATCGCA
TGACAGGGCAACGCTTGTGTCACCTCTCACGTGACATGACACCGTCGTCG
ACGTACACGCCGCGCTTACTTGTCATCGCGTTGCCGTAATATTCCTGCTG
TGTCCCCTGGTTCCCTTTCCATCGTGGTGTGCGTTGTTCCGTGTGCAGAG
GCGAAACATGGAACGGCTGACCCTCGCCTGCGGGGGCATGGCCGTAAATA
GCACGGAGGACATCTCGGAGGACATGCTTGGCTGGGCTGGGCAGGTGTGT
GTGTGTGTGTGTGTGGGGGGGGAGGGGGGGGGGGGCGATGTGATGACAAG
GATTATTGCCTCAAAACACGCGACCTTTGTGGGTCAATAATTAATTGTGT
CTGTGCTGTCATATGTGATGTGTAAGGAAATTTATTTGTAGGATTTTTGC
TTTGCTTTTCATAATGTTTTTCGCATCTGTGACCCACAATGTCAGGTCAG
GCTTTTACAGCAGCCAATTAATCAATCAACAAAACCAATCAGTCAAGCCA
ATCACGCCACCAACAAATCAATCAACCAATCAATCAACCGTTCAAACCAT
CAATCAATGAATGAAATCAACCAATCAATAATCATGTAACGAACCAACCA
ACCAATCACCCAACAAACCAACCAATCAACCAACCAATCAACCGTTCAAA
CCACCATATCAGTGAATTTATCAACCAATCAACCAATCAATGCCCCGCCG
ATGATCCAACCTGCTTCACTCACCCCGTCGCCAACCCAGGTTCACGAGGA
AACCCTGGGGGACGACAAGTTCACCTTCGTCGAGGACGTGCGCCACCCGA
GGTCTTGCACCATCCTCGTCAAGGGCCCCAACGACCACACCATCGCGCAG
GTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11414:263..5165+

>mRNA_S-dermatodea_contig11414.915.1 ID=mRNA_S-dermatodea_contig11414.915.1|Name=mRNA_S-dermatodea_contig11414.915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig11414:263..5165+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCGAGGCGGTGACCGGGGCCGTGCTGACCATCATGAAGTCCAAGGA
CGAGATCGACTTGCACATGATGACCGAGGCGGTGACCGGGGCCGTGCTGA
CCATCATGAAGTCCAAGGACGAGATCGACTTGCACATGGTGGAGATCATG
CAGATGCGGCACAAGGCCGGTACGGACAGCAAGCTCATCAGGGGCATCGT
CATGGACCACGGCGCGAGGCACCCCGACATGCCCCGCAACCTGAAGAAGT
GGAGATCATGCAGATGCGGCACAAGGCCGGTACGGACAGCAAGCTCATCA
GGGGCATCGTCATGGACCACGGCGCGAGGCACCCCGACATGCCCCGCAAC
CTGAAGAACTGCCACATCCTGACGTGCAACGTTTCGTTCGAGTACGAGAA
GACGGAGATCCAGTCCGGCTTCTTCTACTCCACCGCGCAGGAGAGGGAGA
AGCTCGTGGAGAGCGAGCGCAAGTTCACCGACGAGAAGCTGCCACATCCT
GACGTGCAACGTTTCGTTCGAGTACGAGAAGACGGAGATCCAGTCCGGCT
TCTTCTACTCCACCGCGCAGGAGAGGGAGAAGCTCGTGGAGAGCGAGCGC
AAGTTCACCGACGAGAAGGTGATGCAGGTGATCGAGTTCAAGAGGAAGGT
GTGCAAGGAGGGCGAGTCGTTTGTCGTTATCAACCAGAAGGGAATTGACC
CGCTATCTCTCGACATGTTCGCGAAGGAGGGAATCTTCGCGCTCAGGAGG
GCTAAGGTGATGCAGGTGATCGAGTTCAAGAGGAAGGTGTGCAAGGAGGG
CGAGTCGTTTGTCGTTATCAACCAGAAGGGAATTGACCCGCTATCTCTCG
ACATGTTCGCGAAGGAGGGAATCTTCGCGCTCAGGAGGGCTAAGAGGCGA
AACATGGAACGGCTGACCCTCGCCTGCGGGGGCATGGCCGTAAATAGCAC
GGAGGACATCTCGGAGGACATGCTTGGCTGGGCTGGGCAGAGGCGAAACA
TGGAACGGCTGACCCTCGCCTGCGGGGGCATGGCCGTAAATAGCACGGAG
GACATCTCGGAGGACATGCTTGGCTGGGCTGGGCAGGTTCACGAGGAAAC
CCTGGGGGACGACAAGTTCACCTTCGTCGAGGACGTGCGCCACCCGAGGT
CTTGCACCATCCTCGTCAAGGGCCCCAACGACCACACCATCGCGCAGGTA
GTTCACGAGGAAACCCTGGGGGACGACAAGTTCACCTTCGTCGAGGACGT
GCGCCACCCGAGGTCTTGCACCATCCTCGTCAAGGGCCCCAACGACCACA
CCATCGCGCAGGTA
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