mRNA_S-dermatodea_contig1141.914.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1141.914.1
Unique NamemRNA_S-dermatodea_contig1141.914.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1141.914.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.310e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 DPSGVFNMYQEWSDIKNRVLARGFEEQRSDLALYEELRK---DDDASS 135
            DP+G++ MYQEWS+IKNRVL+RGF EQRSDLALY+ LRK   DD ASS
Sbjct:  110 DPTGIYGMYQEWSNIKNRVLSRGFAEQRSDLALYDRLRKEAEDDKASS 157
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BLAST of mRNA_S-dermatodea_contig1141.914.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.130e-9
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 DPSGVFNMYQEWSDIKNRVL---ARGFEEQRSDLALYEELRK---DDDASS 135
            DP+GV+ MYQEWS++KNRVL   A G+ EQRSDLALY+ L K   DD ASS
Sbjct:  110 DPTGVYGMYQEWSNMKNRVLSGIAGGYAEQRSDLALYDRLHKEAEDDRASS 160
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1141.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI7.310e-1372.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE6.130e-964.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1141contigS-dermatodea_contig1141:20225..21009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D8LKL9
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size296
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1141.914.1prot_S-dermatodea_contig1141.914.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1141 20225..20988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.1032782-CDS-S-dermatodea_contig1141:20224..202921622924202.1032782-CDS-S-dermatodea_contig1141:20224..20292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20225..20292 -
1694079088.9888394-CDS-S-dermatodea_contig1141:20224..202921694079088.9888394-CDS-S-dermatodea_contig1141:20224..20292Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20225..20292 -
1622924202.1128397-CDS-S-dermatodea_contig1141:20496..206581622924202.1128397-CDS-S-dermatodea_contig1141:20496..20658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20497..20658 -
1694079089.0099413-CDS-S-dermatodea_contig1141:20496..206581694079089.0099413-CDS-S-dermatodea_contig1141:20496..20658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20497..20658 -
1622924202.1226544-CDS-S-dermatodea_contig1141:20945..209881622924202.1226544-CDS-S-dermatodea_contig1141:20945..20988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20946..20988 -
1694079089.019657-CDS-S-dermatodea_contig1141:20945..209881694079089.019657-CDS-S-dermatodea_contig1141:20945..20988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 20946..20988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924202.1377256-UTR-S-dermatodea_contig1141:20988..210091622924202.1377256-UTR-S-dermatodea_contig1141:20988..21009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1141 20989..21009 -
1694079089.0293772-UTR-S-dermatodea_contig1141:20988..210091694079089.0293772-UTR-S-dermatodea_contig1141:20988..21009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1141 20989..21009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1141.914.1

>prot_S-dermatodea_contig1141.914.1 ID=prot_S-dermatodea_contig1141.914.1|Name=mRNA_S-dermatodea_contig1141.914.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MYQEWSDIKNRVLARGFEEQRSDLALYEELRKDDDASSGESEDAEYGEEE
FPAAPQEHGQGEHGQNSPEVTQPNAIEDTTTAGFVAQDLVA
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mRNA from alignment at S-dermatodea_contig1141:20225..21009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1141.914.1 ID=mRNA_S-dermatodea_contig1141.914.1|Name=mRNA_S-dermatodea_contig1141.914.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=785bp|location=Sequence derived from alignment at S-dermatodea_contig1141:20225..21009- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATCCTAGCGGGGTGTTCAACATGTATCAAGAGTGGTCCGACATCAAGAA
CCGCGTCCTGGCGAGTGAGTGATTGTCAACAGCCGCAACCCGCGCACTAA
GTTTTCGTGCAGTGGCGGTGCGCTACCTGCGCGACTCAACGTGTTGCTCC
TTCTCCGGATGTCATCGGCTCGTTTTTCATGATTTACGTGTTTTGCGTAG
CTGTTGGCGATTTGCACCGAGGACCCGGGGCATCCCACCCGCCTATCGCG
AATGTGCCTACCTAGGAGTAGACTATGGTGATGTTGTTGTTTTCTCGAAC
ATTCTGTAGTCACGCGGTGTGGCCACCAAGCTGTCCCACCGTGCTTCTCA
GGAGGATTTGAAGAGCAGCGGTCAGACCTTGCACTCTACGAGGAGCTCCG
CAAAGACGACGATGCGAGCTCCGGAGAAAGCGAAGACGCTGAATACGGCG
AGGAGGAGTTTCCTGCCGCCCCACAAGAGCATGGGCAAGGAGAGCATGGC
CAAAATTCACCAGGTGCGCGGCCGGCAATGCTTTTACCACAATGTTTAGA
ATCAGTACTGTTCCGGGCGTTGCACGGCAGTATTGCATACGACGGGGCGA
CTCTCGTGGCTGTTGTGTGCCCTGTGCTGATCTGGTGTCAAACGTGTGGC
CAACTTATGCCTTTTGTTTACCACATCGATACGTTCGTTGTTGATTCACT
CCAAAAACCGGGCGCAGAAGTTACGCAACCCAACGCAATCGAGGACACCA
CCACGGCTGGTTTCGTGGCGCAAGACCTCGTGGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1141:20225..21009-

>mRNA_S-dermatodea_contig1141.914.1 ID=mRNA_S-dermatodea_contig1141.914.1|Name=mRNA_S-dermatodea_contig1141.914.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig1141:20225..21009- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCAAGAGTGGTCCGACATCAAGAACCGCGTCCTGGCGAATGTATC
AAGAGTGGTCCGACATCAAGAACCGCGTCCTGGCGAGAGGATTTGAAGAG
CAGCGGTCAGACCTTGCACTCTACGAGGAGCTCCGCAAAGACGACGATGC
GAGCTCCGGAGAAAGCGAAGACGCTGAATACGGCGAGGAGGAGTTTCCTG
CCGCCCCACAAGAGCATGGGCAAGGAGAGCATGGCCAAAATTCACCAGGA
GGATTTGAAGAGCAGCGGTCAGACCTTGCACTCTACGAGGAGCTCCGCAA
AGACGACGATGCGAGCTCCGGAGAAAGCGAAGACGCTGAATACGGCGAGG
AGGAGTTTCCTGCCGCCCCACAAGAGCATGGGCAAGGAGAGCATGGCCAA
AATTCACCAGAAGTTACGCAACCCAACGCAATCGAGGACACCACCACGGC
TGGTTTCGTGGCGCAAGACCTCGTGGCAAAGTTACGCAACCCAACGCAAT
CGAGGACACCACCACGGCTGGTTTCGTGGCGCAAGACCTCGTGGCA
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