|
|
Homology
BLAST of mRNA_S-dermatodea_contig1141.912.1 vs. uniprot
Match: A0A6H5JZS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZS7_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 5.120e-7 Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 10 GAAVLAHGLRENSTLENLQVNGNAVGWSGGRALFRTANSSEIARVIGIRGCDLSE----GDLNTFDPRFPGG 213
GA V+A L N LE L+++GN++G++GGR L R+ N ++R +G++ C L GD FDP FP G
Sbjct: 198 GALVIAQALENNDRLETLRLDGNSIGFNGGRTLVRSLNYWTLSRTLGLKNCMLESRARVGDC--FDPLFPTG 267
BLAST of mRNA_S-dermatodea_contig1141.912.1 vs. uniprot
Match: A0A7S0WJQ1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WJQ1_9CHLO) HSP 1 Score: 56.6 bits (135), Expect = 1.240e-6 Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 7 KGAAVLAHGLRENSTLENLQVNGNAVGWSGGRALFRTANSSEIARVIGIRGCDLSEG-----DLNTFDPRFPGGVFSLDLSNQNELAIADDVLL--AASFRT 291
+ +L GL+ N+TLE L +NGNAVG G R L ++ + +G++G ++S + F+P P G ++LDLS + A+A + AA+ RT
Sbjct: 17 EACVMLGEGLKVNATLEELFLNGNAVGDDGARHLMAALKHNKALQFLGLQGSNMSSSARGGHGASDFNPLAPDGSYTLDLSQPADRAVAQQLCAFDAAAQRT 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 3.3e-07 |
| Seed eggNOG ortholog | 112098.XP_008609686.1 |
| KEGG ko | ko:K02183,ko:K20865 |
| KEGG Pathway | ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04621,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04621,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418 |
| EggNOG free text desc. | Ca2 -binding protein (EF-Hand superfamily |
| EggNOG OGs | COG5126@1,KOG0027@2759,KOG4308@1,KOG4308@2759 |
| COG Functional cat. | DTZ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01009,ko03036,ko04131,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 552 |
| Cds size | 549 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1141.912.1 >prot_S-dermatodea_contig1141.912.1 ID=prot_S-dermatodea_contig1141.912.1|Name=mRNA_S-dermatodea_contig1141.912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=183bp
SCKGAAVLAHGLRENSTLENLQVNGNAVGWSGGRALFRTANSSEIARVIG
IRGCDLSEGDLNTFDPRFPGGVFSLDLSNQNELAIADDVLLAASFRTGCT
LTDVEHFGSVARGGGVGGDTGTGTRLELVRPSTDAPALQPRSPNNHEQAF
AWSTRGYADLRSTLEGLMVRRSGGSQPWRPPPS back to topmRNA from alignment at S-dermatodea_contig1141:8980..13767- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1141.912.1 ID=mRNA_S-dermatodea_contig1141.912.1|Name=mRNA_S-dermatodea_contig1141.912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4788bp|location=Sequence derived from alignment at S-dermatodea_contig1141:8980..13767- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTGCAAAGGGGCAGCGGTCTTGGCCCACGGTCTCCGCGAAAACTCCAC
CCTGGAGAATCTCCAGGTATTCTGCCACCTGTTTTTGCAGGCACTGTTTA
TTTGAAGTAGAGGTATAGTTTGCTGTAGAGAAGTGGTTGCTCCCCTCAAG
CTATGATGTCAGTATTAGTAGAGAAAAAATGTCTATTTTCGGTATTTGTT
ATGGAAAAGTAGTTGTGTCGTCGTGGGCCCACCAAATATTTTACAGAAGT
TTGGACAAACCAAACCTGCTTGTTGACTACTACGCCGTTCGACACACATC
CTCGGAAAGCCTCCGAGCACTTGAAACCTTGAAAACCTTTCAGGTATTTC
TGTCTAGCTATAGAGATTGTTCAGCACTTTAAAAACATCTCCGTTCATTC
GTGACGCAGAAAGCAAACATTTGGCCCAGAGCATTGGGACAACATTGACG
AGAATTGGGAAAGCATTGGCGATAATTGGAACAACCATCAAGGAATGAGC
GGCGGGTGCTTATACGATTGCTAGCTTTTTATGTGGAAGTACAGTATTAC
GTGATGCTCATTTTTTTCTAACGGAAGCGTTGATGCGAAACACCACTTGG
CGTATTATCACAATATCTATTTTTCTGTGGCGTTGTCTTGCTTTCGGACC
TCAACGCTTCACATGACGGACTCGCATTTTTTTCCCTGACGAACACACAC
ACACACACGGGGAATGCCAGGTTTTCCCTCGAATGGTGGCGAAAAAGCCA
AATTTGCTTCGCTGGGCTGATACAGGCGCAAAGCATCTGACGCGATGCTA
GCGAAAGCTACAGATTGCTGGCCGCGACTCGTCGAAAGAACGATGATGTG
TAGACCCTCTGTGTTCGTCCGGACTCCTGTTGGTGCAGACTCGGAAATCC
ACCGACTATGTCTGTCTGTGATATTTGTTAGTCTTAACCACTGACCTATA
AATGTCAGCGCCGACTTAGGCGAGTGGTAAAGATTGATACCTAACAAAGG
TATAACCCGTGATCCGTCTATAATAGCTGTTAAGCCAGGCCGTCGGACCC
GGAAGCGACGTGGAAGGCGGTCGTCGAACCCCGTTGTTATAGTGTTAGGT
AGGCGTTATATATATGGGGACGTGAGTCCCCATATAGTTATAGTGATAGG
TAGGCGTTGTATATATGACGATGTGAGTCTTCATATTAGGTCTTTAGTAT
ATGACGGGTCTGACCACCGGGTTATACTTCGTGAGGTGTTCATCTTCCTC
ACTGAGCTAGGTCAGCGCTGACCTAGCTCAGTGGCTGTCCTAGCTCAGTG
GTTAAGATTGACATAAAATAGTCTCATAGCATACGGAGGAACACAGTGAA
TAGGACCTGATCTACACTAAAAATTTCGTCAACGGAGCTCCAGAGATCTA
ATAGGCCAGCTTGTGGGAAAATAAGGCGTTGGTCCTATGCTCCCTTGGAG
TAAATGTGGTAGCACGCGCGCAGAATCATGACTGGCGGGTCGCCGGGATA
CGTTCTGCTGAGCCAAGTATCGCACTGGGTGAGTCGCCTGAACCATGTTC
TAATAAGGATGTTTTATATCGGGCGGGCGTGAAATTATCTCAGTTTTGTG
TACCACAAAGTCCACCCGGGTACTGTCCCGATGAGTTATGGATTGTGCAC
TTTCTGCGTTCTGTTTCTTTATAAAAACAAAAAAATAACTATATTAACCT
TTGTGGAGCCGAGTCCGTTTTTTTGCCGAATGCGGTGACTAGTATACTGA
CTACTGACTACCGGTAATGCGGTGACTTCTACGCGTACGAGAGCACCGTG
CATGCGAGATAAACGTGGCACGAGGCCGTTTTTCTACCCCCACTACAAGG
GCCAAGAGTAGCGGTGGTTGATCAGTAGCTGTTCGACGCGAAATAAGTTG
CGGGCAGGTGGCCCCCTTAAACCTAAAACGGACTCATTCCCAAAAGGATT
AATTAATGCAACCTTCCGGCCAAGATTCGTGTTTGCCAGAAAAATGTGAC
TAGAAAATCCGAAGAGCATTTTTGGGGGGTGTTGGTGGATTGTTAACAAC
CCAAATAATTGGGAAAGTTAACTATGCTACACCATTGGTAAGCAGGTCGG
TTGTAAGTGTGACGATGAATGAATAAATCAATCTAAAAATCAGATCAATC
AACCGTACTAGTAGCGCTTAGGCAAAGCCTTGACCTTCGGGTGTCTATCC
ATTGGGAAACACCTGGTTGGTGCTAAATAGTGACACCTGTAAGCGAACAG
ACACCGAGCCGGTCCCTCTTTCAGGAAAACAGGCCGGAGTGCCGTCGAGG
AGGGAGGCCAACAAGCCCATCCGTCCCGGCACAGGCTTCATTTCCGTTAA
AAAACCATGTCACGATGGAGGGAAAATATGGGTTCAGCGCCAAGCTTTGT
CGTGTTTTGTGCTCAAAAGCACTTGTTTTTGTTAATTATTTATTATTTTG
TACTCATGCACTGTCATATAGATAAATCCGTAAGCTTTTTCAAATTCTCG
ATTTCTGATCTGCCCACGAGAGGGATCGGCAACAATTAGCGGGCCGGTCG
GCTGTCAGTGTGATGATCAATCAAACCAATAAAAACAACGTCACCTATGC
CTAATGATAGTGATGGGAGCAGCTGCGATGCGCAAGGCGCCAAGCGGAAA
CATCACACCCACACGTACAACTTACGCCGCTGAGCGCCTGCGCCGCTGCA
TCGCTACCTCCAAACCAAGAAACACCACCGTGCTCTTTGCTACACGTGCC
ACTATCGCGGTGATCGTCGCAGGTCAACGGCAACGCCGTGGGGTGGTCCG
GTGGGCGTGCACTTTTCCGTACCGCTAACTCCTCGGAGATCGCGAGGGTA
ATAGGGATACGAGGTTGCGACCTGAGCGAAGGGGACTTGAACACGTTCGA
TCCGAGGTTTCCAGGTGCGGTCATAAAGTGCTATTAAATTATTAATAAAG
TGCTCACGGTTGAGTAAACAGCGACTGCGGTACAAGATCAGGCAAACGGG
TTTTTGTAGCAGTCCCTCGATTGAGAACTAAAGGATATTTTCTTTCGGGC
GGCCGATGATATCATCTCAGTTTTGTGCACAGCAAAGTCCACCTGGGTCC
TGTCCCGATGAGTTGTGGGTTGTACACTTTCTGCGTTAAGGTTATTTATT
TATAATGTGCGGTAGCTCCGCGGCTAGAGGAGGTTATCCGACGGAGGAAA
ACAGCACCCGTGTAAGCAGGGTCGCGGCCGGGAGCCTTTCGTGTTTTTCG
TGGTGACTATAACAGGCGTTCGCAGGGAATTGCTGCAGCTCTTTTCCAGA
CCCTCCGAGACGGGGCACGTCTTCACATCCTTCATGCTCACTCGGCGAAA
AGTATCGATACTTCCTGAACACAAGATGTGAAAACTATTACGAACAAAAA
TGCATACTCCAGACACACATCGAAACCTTGCTTGCTTGAAATCCCTCCAC
AATATGGCATACATAGGCGGAGTTTTCAGTCTCGACCTGTCGAACCAGAA
CGAACTCGCGATCGCGGATGATGTCCTCTTGGCGGCAAGCTTCCGCACCG
GATGCACCCTTACGGACGTGGAGCACTTCGGCTCTGTAGCGCGAGGCGGG
GGAGTCGGAGGAGATACCGGGACGGGCACTCGGTAAGAATGTAGAGAGTT
TCGCGAAGCTCAAGCTCGGCGATGGGTTTAGGGTTCGGCCTTGAATTTCG
GCCTGGAAGAGCCCGCGGGTTCGGCGCGAGCTTGCGTGCTGTGCACTGAG
ATTCGGGCCTCGCATTGTGTCACGTCGGCTCATCGTTCGAGCTGTTTAGT
TAATCTAATCGACAAAATAACGGGCGCAGCCTAGAGGGGTAGGTCTGAGC
AACCAACAGAGGGGTGTGGGAAAAAAGTGTTCCGTATCTTCCCGCGAATA
GATAGGGCCTGCTTCAGCTCTCTTCTACTCTATTAATAGCAAAAACAGCG
GGAGCAAAATTGCCGCCAGCGTAACCTGTATCACGCCATTACGATGTCTG
GTTTTGCTCCATGGTGGTTTTGGCATAGGTTGGAGCTTGTCAGGCCGTCT
ACCGATGCGCCTGCCCTTCAACCCCGAAGCCCAAACAATCACGAGCAAGC
ATTTGCGTGGAGCACCAGGTGAACTTTCAAGTGGGGCTACAGTACGCCGT
TGGGGCTTGCGTGAGTTTGTTTCTGCCGCTAACCCCTGAAGTGTCGAGGG
GTGTGGTAGGAGGGAGGAAGTACGGTTAGGGTCAATAGACGTTTGAGCTT
TGTGCTGGAGGGCAGTATCTTTACTACTTAAATAGCGCTTTGAACGTTTC
ATAATTAGCGATTTTAGAGTGACCATGTCAACACACTTTCCTATACGATT
TTGTCCAACAAACTCCAATACGATTTTTGAGACCGATTTGTGATGTCGAA
CAACTTGGTGTTTGCGTTGAGCGCCAAAACACTTGATTTTAGAGTTGAAC
GACCACGCACATCTCACGGGCGTAGCCGTGGCTACCTACTACAGCAGTTG
CTTAATAAATATTGTTACGTCGCCAATGTCCGACGTGAAGCTGTGTTACT
GCCCCACTCCTCGCGCTGATCATCTTACGCGTTTCTCGTATACGTGAACG
CATCCGTCCGCCCAAATATCTCATATACTAACAAGCTTGAACTGTCTAGT
GCTAATCACGACAACGCCCCTTCGCTGTGCCTCTCTGTATCATATGGGAA
GGGGGTACGCGGACCTGCGTTCGACGCTAGAAGGCTTGATGGTGCGTAGA
TCTGGCGGCAGCCAACCGTGGCGGCCCCCGCCAAGCGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1141:8980..13767- >mRNA_S-dermatodea_contig1141.912.1 ID=mRNA_S-dermatodea_contig1141.912.1|Name=mRNA_S-dermatodea_contig1141.912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at S-dermatodea_contig1141:8980..13767- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTGCAAAGGGGCAGCGGTCTTGGCCCACGGTCTCCGCGAAAACTCCAC
CCTGGAGAATCTCCAGTCTTGCAAAGGGGCAGCGGTCTTGGCCCACGGTC
TCCGCGAAAACTCCACCCTGGAGAATCTCCAGGTCAACGGCAACGCCGTG
GGGTGGTCCGGTGGGCGTGCACTTTTCCGTACCGCTAACTCCTCGGAGAT
CGCGAGGGTAATAGGGATACGAGGTTGCGACCTGAGCGAAGGGGACTTGA
ACACGTTCGATCCGAGGTTTCCAGGTCAACGGCAACGCCGTGGGGTGGTC
CGGTGGGCGTGCACTTTTCCGTACCGCTAACTCCTCGGAGATCGCGAGGG
TAATAGGGATACGAGGTTGCGACCTGAGCGAAGGGGACTTGAACACGTTC
GATCCGAGGTTTCCAGGCGGAGTTTTCAGTCTCGACCTGTCGAACCAGAA
CGAACTCGCGATCGCGGATGATGTCCTCTTGGCGGCAAGCTTCCGCACCG
GATGCACCCTTACGGACGTGGAGCACTTCGGCTCTGTAGCGCGAGGCGGG
GGAGTCGGAGGAGATACCGGGACGGGCACTCGGCGGAGTTTTCAGTCTCG
ACCTGTCGAACCAGAACGAACTCGCGATCGCGGATGATGTCCTCTTGGCG
GCAAGCTTCCGCACCGGATGCACCCTTACGGACGTGGAGCACTTCGGCTC
TGTAGCGCGAGGCGGGGGAGTCGGAGGAGATACCGGGACGGGCACTCGGT
TGGAGCTTGTCAGGCCGTCTACCGATGCGCCTGCCCTTCAACCCCGAAGC
CCAAACAATCACGAGCAAGCATTTGCGTGGAGCACCAGGTTGGAGCTTGT
CAGGCCGTCTACCGATGCGCCTGCCCTTCAACCCCGAAGCCCAAACAATC
ACGAGCAAGCATTTGCGTGGAGCACCAGGGGGTACGCGGACCTGCGTTCG
ACGCTAGAAGGCTTGATGGTGCGTAGATCTGGCGGCAGCCAACCGTGGCG
GCCCCCGCCAAGCGGGGTACGCGGACCTGCGTTCGACGCTAGAAGGCTTG
ATGGTGCGTAGATCTGGCGGCAGCCAACCGTGGCGGCCCCCGCCAAGC back to top
|