mRNA_S-dermatodea_contig11406.908.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11406.908.1
Unique NamemRNA_S-dermatodea_contig11406.908.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.740e-28
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    4 VSIEGSVLDGCGSSGDAVRVILADRGCEVTTNDIN-----------HVENFVEHFQG--NGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATVEAWMVW 384
            VSI G VLD CG + DAV + L D  C+V TND+               +F + F    +G++PDW+VTSPPYK A+ F+K A  +AK GV+ KL L+FL+P A RA WL  NPP+  +++SRA Y+       E W VW
Sbjct:   85 VSISGCVLDMCGGTDDAVAIRLRDT-CQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 223          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.700e-23
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = 1
Query:    4 VSIEGSVLDGCGSSGDAVRVILADRGCEVTTNDIN-------HVENFVEHFQGN------GRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATV-EAWMVW 384
            V+I G VLD CG   DAV        CEV TND++       +++  +  F+ N      G++PDWVVTSPPYK A+ F+K A  +A  GV+ KL L+FL+P A R  WL++NPP+  I L RA Y       V E W VW
Sbjct:  143 VAIAGCVLDMCGGPEDAVAQGFRST-CEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVW 282          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.040e-22
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   34 CGSSGDAVRVILADRGCEVTTNDINH-----------VENFVEHFQG--NGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATY-RGRMSATVEAWMVW 384
            CG   DAV   L    CE+ TND++            +E F E F    +G+RP+WVVTSPPY  A+ F+K A  +A  GV+FK+ + FL+P A R  WL  NPPS  + L RA Y R   + T E W VW
Sbjct:    2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVW 131          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.780e-19
Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 VSIEGSVLDGCGSSGDAVRVILADRGCEVTTNDIN----------------HVENFVEHF--QGNGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVI 321
            V +EG VLD CG  GDA+   L    C+V TNDI+                 + +F   F     G+RPDWV+TSPPYK A+ ++K+A  +A  GV+ KL L+FL+P A R  WL  NPP+  +
Sbjct:   97 VELEGCVLDMCGGPGDAIATRLGAT-CKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.200e-18
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   34 CGSSGDAVRVILADRGCEVTTNDINHVENFVEHFQGNGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATV-EAWMVW 384
            CG   DAV +      CEV TND++   +        G++PDWVVTSPPYK A+ F+K    +A  GV+ +L L+F +P A R  WL++NPP     L RA Y       V E W VW
Sbjct:    2 CGGPEDAVALGFGGT-CEVLTNDVSSRLSPAHP----GKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVW 114          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5K9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.440e-17
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  154 PDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATVEAWMVW 384
            PDWVVTSPPYK A+ F+K A  +AK  V+ KL L+FL+P A R  WL  NPP+  +++SRA Y+       E W VW
Sbjct:   57 PDWVVTSPPYKGALGFVKAALTVAKESVALKLPLSFLEPCADREGWLQANPPALCMMMSRARYQPAHVRVGEFWGVW 133          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.270e-17
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  112 VENFVEHFQG--NGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATV-EAWMVW 384
            +E+F E F    +G+RP+WVVTSPPY  A+ F+K A  +A  GV FK+ ++ L+P A R  WL  NPPS  + L RA Y    +A + E W VW
Sbjct:  145 LESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVW 238          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: D7G7B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 4.470e-14
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   34 CGSSGDAVRVILADRGCEVTTNDINH-----------VENFVEHFQG--NGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWL 294
            CG   DAV   L    CE+ TND++            +E F E+F    +G+RP+WVV SPPY  A+ F+K A  +A  GV+FK+ + FL+P A R  WL
Sbjct:    2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLDASLELFPENFLAAYSGKRPEWVVISPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWL 100          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5K2D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-8
Identity = 42/127 (33.07%), Postives = 57/127 (44.88%), Query Frame = 1
Query:   34 CGSSGDAVRVILADRGCEVTTNDINH-----------VENFVEHFQG--NGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIENPPSTVIVLSRATYRGRMSATVEAW 375
            CG   DAV   L    CE+ T D++            +E+F E F    +G+RP+WVVTSPPY  A+ F+K A R    G+      +F      R  WL  N P   + +S  T R     T+  W
Sbjct:    2 CGGPTDAVATRLRS-ACEIRTKDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMR----GIQ---NAHFFTATLRRPGWLTANEPPVCVFVS--TQRKTRMRTMRRW 118          
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.870e-8
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    4 VSIEGSVLDGCGSSGDAVRVILADRGCEVTTNDINHVENFVEHFQGNGRRPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPV 273
            V+I G VLD CG   DAV          +  + +   + F++     G++PDWVVTSPPYK ++ F+  A  +A  GV+ KL L    PV
Sbjct:   62 VAITGCVLDMCGGPEDAVAQGFGGTCTNLDASLVYFPDEFIK--DNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNPV 149          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11406.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K049_9PHAE3.740e-2844.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE1.700e-2343.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.040e-2242.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJU4_ECTSI2.780e-1941.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K929_9PHAE3.200e-1841.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B9_9PHAE2.440e-1750.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU02_9PHAE4.270e-1745.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7B0_ECTSI4.470e-1441.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2D0_9PHAE1.510e-833.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1N5_9PHAE3.870e-837.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11406contigS-dermatodea_contig11406:3126..3919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.rRNA (adenine-N6,N6-)-dimethyltransferase activity
EggNOG OGsCOG0030@1,COG0030@2
EC2.1.1.182
COG Functional cat.J
CAZyGT2,GT4
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.773313-CDS-S-dermatodea_contig11406:3125..33991622924201.773313-CDS-S-dermatodea_contig11406:3125..3399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11406 3126..3399 -
1694079088.7629478-CDS-S-dermatodea_contig11406:3125..33991694079088.7629478-CDS-S-dermatodea_contig11406:3125..3399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11406 3126..3399 -
1622924201.7829514-CDS-S-dermatodea_contig11406:3806..39191622924201.7829514-CDS-S-dermatodea_contig11406:3806..3919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11406 3807..3919 -
1694079088.7727857-CDS-S-dermatodea_contig11406:3806..39191694079088.7727857-CDS-S-dermatodea_contig11406:3806..3919Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11406 3807..3919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11406.908.1prot_S-dermatodea_contig11406.908.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11406 3126..3919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11406.908.1

>prot_S-dermatodea_contig11406.908.1 ID=prot_S-dermatodea_contig11406.908.1|Name=mRNA_S-dermatodea_contig11406.908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
HVSIEGSVLDGCGSSGDAVRVILADRGCEVTTNDINHVENFVEHFQGNGR
RPDWVVTSPPYKNAIVFLKNACRIAKVGVSFKLRLNFLQPVASRAQWLIE
NPPSTVIVLSRATYRGRMSATVEAWMVWK
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mRNA from alignment at S-dermatodea_contig11406:3126..3919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11406.908.1 ID=mRNA_S-dermatodea_contig11406.908.1|Name=mRNA_S-dermatodea_contig11406.908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=794bp|location=Sequence derived from alignment at S-dermatodea_contig11406:3126..3919- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGTCTCGATCGAAGGGAGCGTCCTGGATGGGTGCGGTAGCAGTGGCGA TGCAGTCCGCGTGATACTGGCGGACCGTGGGTGTGAGGTCACTACCAATG ACATCAATCACGTGTGAGTTTCTATTTGGGTGCACTCTCGACAGTAGTAC CAACATGTAGCGAACAAATAACTGCACTGCCGCTGCTACACATGTACAAC ACAACCTTTGTCTACTGCATAGTACAGAAACCGCAGCAGTAGTGGTGAAT GCACAACACATGATAGCGTATTGATAGTAATGCTGTTATATATGTAGACG TGATCGAGGGACCGTCCTATTTGTTGACTGCTTGATCAGGCACCACCGAG AGTGGTAACTGACGTGCAACAGGCAACAAATACGGACCCACGGCACAAGC CAGAAGTTATGCTGGCGAAAATCCTCGCAAGTGCCGGCCTCACTCTACTA TCCCCGTCGGTTTCCGCCGTGTCGACTTTAACGCCAGGTTGCCCGCAGAC ACCCACATGGATGCTTCCAGCGAGAACTTCGTAGAGCACTTTCAGGGGAA TGGACGCCGCCCAGATTGGGTAGTAACGAGCCCGCCCTACAAGAACGCCA TCGTCTTCCTCAAGAACGCCTGTAGAATTGCGAAAGTTGGAGTTTCGTTC AAGCTTCGACTCAATTTCTTGCAGCCGGTGGCTTCTCGGGCACAATGGCT GATTGAAAATCCACCGTCGACGGTAATAGTTCTAAGCCGGGCCACTTACA GGGGAAGGATGTCTGCGACAGTCGAAGCCTGGATGGTATGGAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11406:3126..3919-

>mRNA_S-dermatodea_contig11406.908.1 ID=mRNA_S-dermatodea_contig11406.908.1|Name=mRNA_S-dermatodea_contig11406.908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig11406:3126..3919- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGTCTCGATCGAAGGGAGCGTCCTGGATGGGTGCGGTAGCAGTGGCGA
TGCAGTCCGCGTGATACTGGCGGACCGTGGGTGTGAGGTCACTACCAATG
ACATCAATCACGTCACGTCTCGATCGAAGGGAGCGTCCTGGATGGGTGCG
GTAGCAGTGGCGATGCAGTCCGCGTGATACTGGCGGACCGTGGGTGTGAG
GTCACTACCAATGACATCAATCACGTCGAGAACTTCGTAGAGCACTTTCA
GGGGAATGGACGCCGCCCAGATTGGGTAGTAACGAGCCCGCCCTACAAGA
ACGCCATCGTCTTCCTCAAGAACGCCTGTAGAATTGCGAAAGTTGGAGTT
TCGTTCAAGCTTCGACTCAATTTCTTGCAGCCGGTGGCTTCTCGGGCACA
ATGGCTGATTGAAAATCCACCGTCGACGGTAATAGTTCTAAGCCGGGCCA
CTTACAGGGGAAGGATGTCTGCGACAGTCGAAGCCTGGATGGTATGGAAA
CGAGAACTTCGTAGAGCACTTTCAGGGGAATGGACGCCGCCCAGATTGGG
TAGTAACGAGCCCGCCCTACAAGAACGCCATCGTCTTCCTCAAGAACGCC
TGTAGAATTGCGAAAGTTGGAGTTTCGTTCAAGCTTCGACTCAATTTCTT
GCAGCCGGTGGCTTCTCGGGCACAATGGCTGATTGAAAATCCACCGTCGA
CGGTAATAGTTCTAAGCCGGGCCACTTACAGGGGAAGGATGTCTGCGACA
GTCGAAGCCTGGATGGTATGGAAA
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