mRNA_S-dermatodea_contig11405.907.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11405.907.1
Unique NamemRNA_S-dermatodea_contig11405.907.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: D7G288_ECTSI (D-lactate dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G288_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 9.600e-32
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVLAHRKDPETGRLVLC 192
            MEGTCTGEHGVG GKIKYLPEEHG GAMH MRVIKR  DP  LMNPGKVLAHR+DP+TGRLVLC
Sbjct:  369 MEGTCTGEHGVGVGKIKYLPEEHGDGAMHTMRVIKRGLDPGGLMNPGKVLAHRRDPQTGRLVLC 432
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A835YUA6_9STRA (Putative d-lactate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.430e-19
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVLAHRKDPETGRLVLC 192
            MEGTCTGEHGVG GKIKYL +E    A+  M  IK A DP+ +MNPGKV+ H++DP TGRLV C
Sbjct:  432 MEGTCTGEHGVGYGKIKYLQKELNGAAIRTMVSIKNAIDPNGIMNPGKVVPHKRDPVTGRLVAC 495
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: UPI001ADC633B (FAD-binding protein n=1 Tax=Aquabacter sp. L1I39 TaxID=2820278 RepID=UPI001ADC633B)

HSP 1 Score: 82.8 bits (203), Expect = 5.470e-17
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVLA 153
            MEGTCTGEHGVG GK+KYLP EHG   + AMR IKRA DP  +MNPGK++A
Sbjct:  419 MEGTCTGEHGVGQGKMKYLPVEHGEATLDAMRAIKRALDPQDIMNPGKIVA 469
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A832AM40_9RHOB (FAD-binding oxidoreductase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832AM40_9RHOB)

HSP 1 Score: 79.0 bits (193), Expect = 9.490e-17
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL 150
            M+GTCTGEHGVG GKIKYL  EHGP A+  MR IKRA DPD ++NPGK+L
Sbjct:  133 MDGTCTGEHGVGLGKIKYLAAEHGP-ALDVMRRIKRALDPDSILNPGKIL 181
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A258IJ84_9HYPH (FAD-binding oxidoreductase n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A258IJ84_9HYPH)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL 150
            MEGTCTGEHGVG GK+KYL  EHG   + AMR IKRAFDP  +MNPGK+L
Sbjct:  419 MEGTCTGEHGVGQGKMKYLSAEHGEATLDAMRAIKRAFDPQNIMNPGKIL 468
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A6L5FNM9_9HYPH (FAD-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FNM9_9HYPH)

HSP 1 Score: 81.6 bits (200), Expect = 1.400e-16
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL 150
            M+GTCTGEHGVG GK+KYL  EHGP A+ AMR IKRA DPD ++NPGK++
Sbjct:  415 MDGTCTGEHGVGQGKMKYLLAEHGPEALAAMRAIKRALDPDNILNPGKII 464
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A7Y2BNM7_9HYPH (FAD-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BNM7_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 3.600e-16
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL 150
            MEGTCTGEHGVG GK+KYL +EHGP A+  MR IKRA DPD +MNPGKV+
Sbjct:  415 MEGTCTGEHGVGMGKMKYLDDEHGP-ALDIMRTIKRAIDPDNIMNPGKVV 463
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A346A343_9HYPH (FAD-binding protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A343_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 3.610e-16
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVLA 153
            M+GTCTGEHGVG GKIKYL  EHGP A+  M  IKRA DP+ ++NPGK+LA
Sbjct:  417 MDGTCTGEHGVGQGKIKYLEAEHGPAALAVMASIKRALDPENILNPGKILA 467
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BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: A0A4R3M6F7_9HYPH (D-lactate dehydrogenase (Cytochrome) n=1 Tax=Aquabacter spiritensis TaxID=933073 RepID=A0A4R3M6F7_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 3.620e-16
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVLA 153
            M+GTCTGEHGVG GK+KYL  EHG   + AMR +KRAFDP  +MNPGK++A
Sbjct:  419 MDGTCTGEHGVGQGKMKYLAAEHGAATLDAMRTLKRAFDPQNIMNPGKIVA 469
[Close]
BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Match: UPI001BC5DFEB (FAD-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BC5DFEB)

HSP 1 Score: 79.7 bits (195), Expect = 6.780e-16
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL 150
            MEGTCTGEHGVG GK+KYL  EHGP  +  MR IKRA DPD +MNPGK++
Sbjct:  417 MEGTCTGEHGVGQGKMKYLEAEHGPVMLDMMRSIKRALDPDNIMNPGKIV 466
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11405.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G288_ECTSI9.600e-3285.94D-lactate dehydrogenase, putative n=1 Tax=Ectocarp... [more]
A0A835YUA6_9STRA1.430e-1964.06Putative d-lactate dehydrogenase n=1 Tax=Tribonema... [more]
UPI001ADC633B5.470e-1770.59FAD-binding protein n=1 Tax=Aquabacter sp. L1I39 T... [more]
A0A832AM40_9RHOB9.490e-1772.00FAD-binding oxidoreductase n=1 Tax=Rhodobacteracea... [more]
A0A258IJ84_9HYPH1.030e-1672.00FAD-binding oxidoreductase n=5 Tax=Hyphomicrobiale... [more]
A0A6L5FNM9_9HYPH1.400e-1670.00FAD-binding protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A7Y2BNM7_9HYPH3.600e-1674.00FAD-binding protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A346A343_9HYPH3.610e-1668.63FAD-binding protein n=1 Tax=Pseudolabrys taiwanens... [more]
A0A4R3M6F7_9HYPH3.620e-1666.67D-lactate dehydrogenase (Cytochrome) n=1 Tax=Aquab... [more]
UPI001BC5DFEB6.780e-1670.00FAD-binding protein n=1 Tax=Hyphomicrobiales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11405contigS-dermatodea_contig11405:5134..5889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D7G288
Preferred nameDLD1
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006081,GO:0006082,GO:0006089,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0019752,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1903457
EggNOG free text desc.cytokinin dehydrogenase activity
EggNOG OGsCOG0277@1,KOG1231@2759
Ec32 ortholog descriptionFAD-binding, type 2, subdomain 1
Ec32 orthologEc-16_002060.1
EC1.1.2.4
COG Functional cat.C
BiGG ReactioniMM904.YDL174C,iND750.YDL174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.7296376-CDS-S-dermatodea_contig11405:5133..51941622924201.7296376-CDS-S-dermatodea_contig11405:5133..5194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11405 5134..5194 +
1694079088.7389948-CDS-S-dermatodea_contig11405:5133..51941694079088.7389948-CDS-S-dermatodea_contig11405:5133..5194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11405 5134..5194 +
1622924201.7379122-CDS-S-dermatodea_contig11405:5752..58891622924201.7379122-CDS-S-dermatodea_contig11405:5752..5889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11405 5753..5889 +
1694079088.7545335-CDS-S-dermatodea_contig11405:5752..58891694079088.7545335-CDS-S-dermatodea_contig11405:5752..5889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11405 5753..5889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11405.907.1prot_S-dermatodea_contig11405.907.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11405 5134..5889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11405.907.1

>prot_S-dermatodea_contig11405.907.1 ID=prot_S-dermatodea_contig11405.907.1|Name=mRNA_S-dermatodea_contig11405.907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MEGTCTGEHGVGAGKIKYLPEEHGPGAMHAMRVIKRAFDPDCLMNPGKVL
AHRKDPETGRLVLCV*
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mRNA from alignment at S-dermatodea_contig11405:5134..5889+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11405.907.1 ID=mRNA_S-dermatodea_contig11405.907.1|Name=mRNA_S-dermatodea_contig11405.907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig11405:5134..5889+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGCACGTGCACCGGCGAGCACGGGGTGGGCGCCGGCAAGATTAA
GTACCTTCCCGGTGCGTTTCTTTCACGCTTTACCTCTATAGTACGATTAG
AAGGGGGGGCAGGACCAAGGGAGCGGTAGGTTCGGCATTCCTCGCCGGTC
GACACCTTCGTATTTATTTCCTCAACATTTGTGGGCGATGATGATGCCGA
GGGTTGATGCTTTTGTTGCGACGTTTCGCGTTTTGGGGTTATGTAGGAAT
GCTTCTGCCGTTTGACACGCTCCCGGATTGCTTCCAGCGACAGCTCACGG
TGAAATTTCCCGAGTCGCATTGTGCATTTTTCATTTTTTGCGTGCACATC
GAGATGCCTTTTACTGCCGTTCTCGTGCAACACCATGAGTATTACTTGGA
AGTTTTTATCAAGTCCGAGGAACCATGAACCTGGAGCAAGCGTGACATGG
TATCCCGCACCAATCCACGAAAACGCCGTGCCCGAAGCACTCTCGGCGTG
CTGTACGTCGTAGAAGTGCTTACATATTTTCTGCCTGTCCAGCGTCCCCT
CTTGCACATATGGACTATTTAGTAACCATCCAAACTACCCGTGATTTCGC
TAAACGCTTCTCGCCGCAGAGGAGCACGGCCCTGGAGCGATGCATGCTAT
GCGCGTCATCAAGCGCGCGTTCGACCCGGACTGCCTGATGAACCCCGGAA
AAGTGCTTGCGCACCGAAAAGATCCGGAGACTGGCCGCCTTGTTCTATGC
GTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11405:5134..5889+

>mRNA_S-dermatodea_contig11405.907.1 ID=mRNA_S-dermatodea_contig11405.907.1|Name=mRNA_S-dermatodea_contig11405.907.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig11405:5134..5889+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGGCACGTGCACCGGCGAGCACGGGGTGGGCGCCGGCAAGATTAA
GTACCTTCCCGATGGAAGGCACGTGCACCGGCGAGCACGGGGTGGGCGCC
GGCAAGATTAAGTACCTTCCCGAGGAGCACGGCCCTGGAGCGATGCATGC
TATGCGCGTCATCAAGCGCGCGTTCGACCCGGACTGCCTGATGAACCCCG
GAAAAGTGCTTGCGCACCGAAAAGATCCGGAGACTGGCCGCCTTGTTCTA
TGCGTTTGAAGGAGCACGGCCCTGGAGCGATGCATGCTATGCGCGTCATC
AAGCGCGCGTTCGACCCGGACTGCCTGATGAACCCCGGAAAAGTGCTTGC
GCACCGAAAAGATCCGGAGACTGGCCGCCTTGTTCTATGCGTTTGA
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