mRNA_S-dermatodea_contig11402.906.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11402.906.1
Unique NamemRNA_S-dermatodea_contig11402.906.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: D7FVT7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT7_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.020e-65
Identity = 139/195 (71.28%), Postives = 162/195 (83.08%), Query Frame = 1
Query:    1 VSNADDELAESLASAASVASGVAGEXXXXXXXXXXXXXXXXXXXXGQGGGSSVDEFDFDNVP---RAGTGKR--KKTTPGKSASDLADLGADIERYRKQENRQPEGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKLGESGDENEGTR 570
            V ++DD+++E LA  AS AS     XXXXXXXXXXXXXXXXXXXXGQGG  + DEFD D++P     G  +R  K+TTPGK+AS+LADLGADIER+R+ ENRQPE  GES+ SGAK +IS+II++DFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFN+KWT VVQPALGVLMGGTIAGGVVSKLG SG++ +  R
Sbjct:  180 VDSSDDDMSEKLAGVASAASXXXXXXXXXXXXXXXXXXXXXXXXXGQGGAPAADEFDIDSMPAPGERGQARRAGKRTTPGKTASELADLGADIERFRRAENRQPETAGESIASGAKDIISTIISIDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNDKWTPVVQPALGVLMGGTIAGGVVSKLGGSGNDEDDNR 374          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A7S1Y1F8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y1F8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.230e-15
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  226 KSASDLADLGADIERYRKQENRQPE---GVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGF-SNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKLGESGD 552
            K  +++ DL  DI   RK+E  + E   G+GE     AKG    I+  DFFVV+AF+ WFI G++  YG  + + +LD F   + ++VQPALG+LMGGT+ GG + K+  + D
Sbjct:   61 KLKTEMDDLARDISTLRKKEGLKQEDEGGIGEF----AKGAFVKILLADFFVVLAFLGWFIVGLLQKYGGGAESPILDSFRANFETLVQPALGLLMGGTLLGGALEKINGNDD 169          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A835ZDF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.670e-14
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  241 LADLGADIERYRKQENRQ-PEGVGESLVSGA--KGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKL----GESGDE 555
            + +LGADI +Y+++E    P+    SL +GA  K + S I+  DFF+V+ F+ W +  V++     +  LLD F+  W  ++QPALGVLM GTIA G VS+L    G  GDE
Sbjct:   71 MDELGADIAKYKRREAAAGPKD--SSLDAGATLKAIFSWILTADFFIVVGFLGWLVVAVIARSVLKDGSLLDGFSAAWAPIIQPALGVLMAGTIASGTVSQLTGGGGGEGDE 180          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A7S2V0Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Y3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.150e-14
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  250 LGADIERYRKQENRQPEGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVS 531
            L AD+  +++ +    +      +  AK + S I+ +DFFVV+  + WF+ G+   YGF  +F+LD F   + ++VQPA+G+LM GTIAGGV+S
Sbjct:  148 LAADLAAFKRTQAPSKKEEDAGAMGQAKDIFSVILTIDFFVVLGMLGWFLVGIAFRYGFQQSFILDSFKASFDTLVQPAIGLLMLGTIAGGVIS 241          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A7R9U2Y0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Y0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.080e-12
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  229 SASDLADLGADIERYRKQENR--------QPEGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSY-GFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKLGE 543
            S S++ +L  DI   R++E          +PEG    L   A+G  + I+  DF +V+ F+ WFI GV+  Y G   + +LD F   + ++VQPALG+LMGGT+ GG++ KL E
Sbjct:   59 SGSEMNELERDIAALRRRETSVARTRAQDEPEG---GLKDFARGAFAKILLADFVLVLGFLGWFIVGVLQKYVGGGASPILDSFRASFETLVQPALGLLMGGTLLGGLLEKLKE 169          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: W7TYN1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYN1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.030e-11
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  250 LGADIERYRKQENRQPEGVGE-----SLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKL 537
            L  DI R+RK+E       G+     SL   A  ++  ++  DFFVV+AF+ WF+ GVV     ++  ++D+F + W  V+QPALG+LM GT+  G ++ +
Sbjct:  118 LQQDIVRFRKKEREVQALEGDVTGFASLADKAGSILQKVLVADFFVVLAFLGWFVTGVVFKSALNDATVIDKFTDIWMPVIQPALGILMAGTLGVGALNSV 218          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A1Y1IJR1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJR1_KLENI)

HSP 1 Score: 69.3 bits (168), Expect = 2.250e-11
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  310 ESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKLGESGDE 555
            ++     K VI +I+  DFF +I  +LW IAGVV      +T LLD +   W +V QPA+GVLM GTI  G +S L ++ DE
Sbjct:   98 DNATRATKSVIDTILVADFFFIILVLLWLIAGVVERQALDSTKLLDVWLPLWGTVFQPAIGVLMAGTIVSGTISTLSQNPDE 179          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A0G4FHY2_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FHY2_VITBC)

HSP 1 Score: 68.9 bits (167), Expect = 9.780e-11
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  247 DLGADIERYRKQ-----ENRQPEGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTI----AGGVVSKLGESGDENEGT 567
            DL A +E  R +        Q +G  E  ++ A+  +S+I+ +DFFVV+ F+LWF+ G +++  F+    +  F+  WT VVQPALG+LM GT+    AG V  K+   G + EGT
Sbjct:  141 DLAAAVEAERAKWASLPSRAQQQGQDEGWMTKARDSLSTILVVDFFVVLVFVLWFVFGTIANAAFNAPAAIQAFDLLWTPVVQPALGILMLGTLGSAGAGWVQEKM--VGGKQEGT 254          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: K0TI04_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI04_THAOC)

HSP 1 Score: 65.1 bits (157), Expect = 1.640e-9
Identity = 51/133 (38.35%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  172 FDNVPRAGTGKRKKTTPGKSASDLADLGADIERYRKQENRQP---EGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGGVVSKLGESGDENE 561
            FDNV       + +TT       LAD  A   R R  +   P   E    S+      V+S+I+ +DFFVVI  ++WFIAG+  S    N  +   FN  +  V QPALG+LM G+IAG V +  G+S +ENE
Sbjct:   94 FDNVDEF----QGRTTDDSLEQLLAD--ARSMRTRTSDEASPLKEEETPSSIKDTVFEVVSTIVTIDFFVVIGLLVWFIAGIFCSSVLGNDTVQIAFNMNFEKVTQPALGILMIGSIAGAVGNNDGDS-NENE 219          
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Match: A0A7S4JU94_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JU94_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.290e-9
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  226 KSASDLADLGADIERYRKQENRQPEGVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQFNEKWTSVVQPALGVLMGGTIAGG 522
            ++A    D  AD +    +E ++ EG G S+      VIS+I+ +DFF+VIA +LWF+AG+  S    +  +   FN ++ SVVQPALGVLM  + AGG
Sbjct:  224 RAAESGGDFDADADPSSLEE-KEDEG-GLSIPKSLGEVISTIVTIDFFIVIALLLWFLAGIFCSSILKDDMVQIAFNNRFESVVQPALGVLMIASAAGG 320          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11402.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FVT7_ECTSI1.020e-6571.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1Y1F8_9STRA4.230e-1541.59Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835ZDF1_9STRA5.670e-1441.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V0Y3_9STRA6.150e-1439.36Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9U2Y0_9STRA7.080e-1238.60Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TYN1_9STRA1.030e-1136.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1Y1IJR1_KLENI2.250e-1143.90Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A0G4FHY2_VITBC9.780e-1137.93Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
K0TI04_THAOC1.640e-938.35Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4JU94_9STRA4.290e-941.41Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11402contigS-dermatodea_contig11402:6861..7433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue4.9e-09
Seed eggNOG ortholog159749.K0TI04
EggNOG OGs2CX5Z@1,2RWD5@2759,2XDMX@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002090.1
Exons1
Model size573
Cds size573
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.7039032-CDS-S-dermatodea_contig11402:6860..74331622924201.7039032-CDS-S-dermatodea_contig11402:6860..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 6861..7433 -
1694079088.7255113-CDS-S-dermatodea_contig11402:6860..74331694079088.7255113-CDS-S-dermatodea_contig11402:6860..7433Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11402 6861..7433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11402.906.1prot_S-dermatodea_contig11402.906.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11402 6861..7433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11402.906.1

>prot_S-dermatodea_contig11402.906.1 ID=prot_S-dermatodea_contig11402.906.1|Name=mRNA_S-dermatodea_contig11402.906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=191bp
VSNADDELAESLASAASVASGVAGEAASVVGDAAKSAMGAAMSAIGQGGG
SSVDEFDFDNVPRAGTGKRKKTTPGKSASDLADLGADIERYRKQENRQPE
GVGESLVSGAKGVISSIIALDFFVVIAFMLWFIAGVVSSYGFSNTFLLDQ
FNEKWTSVVQPALGVLMGGTIAGGVVSKLGESGDENEGTR*
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mRNA from alignment at S-dermatodea_contig11402:6861..7433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11402.906.1 ID=mRNA_S-dermatodea_contig11402.906.1|Name=mRNA_S-dermatodea_contig11402.906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at S-dermatodea_contig11402:6861..7433- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGCAATGCAGACGACGAATTGGCCGAATCACTGGCGAGTGCCGCATC GGTCGCATCGGGGGTTGCTGGTGAAGCGGCTTCCGTGGTGGGCGACGCCG CTAAGTCCGCGATGGGCGCCGCTATGTCGGCGATTGGCCAGGGAGGCGGG TCATCCGTGGACGAGTTCGACTTTGACAACGTCCCTCGCGCCGGGACGGG GAAGCGGAAGAAGACCACGCCCGGAAAGTCTGCATCCGATCTTGCAGACT TGGGGGCGGACATCGAGCGGTACCGGAAGCAGGAGAACCGGCAACCAGAG GGCGTCGGGGAGTCGCTCGTCTCGGGCGCCAAGGGCGTGATATCGAGCAT AATAGCGCTGGACTTCTTCGTCGTTATCGCCTTCATGCTGTGGTTCATCG CTGGCGTGGTTTCCTCGTACGGTTTCAGCAACACGTTTTTGTTGGACCAG TTTAACGAGAAATGGACGTCGGTCGTGCAGCCGGCACTCGGCGTGTTGAT GGGCGGCACCATTGCCGGCGGCGTTGTGTCTAAGCTCGGAGAATCGGGAG ACGAGAACGAGGGGACTCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11402:6861..7433-

>mRNA_S-dermatodea_contig11402.906.1 ID=mRNA_S-dermatodea_contig11402.906.1|Name=mRNA_S-dermatodea_contig11402.906.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at S-dermatodea_contig11402:6861..7433- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGCAATGCAGACGACGAATTGGCCGAATCACTGGCGAGTGCCGCATC
GGTCGCATCGGGGGTTGCTGGTGAAGCGGCTTCCGTGGTGGGCGACGCCG
CTAAGTCCGCGATGGGCGCCGCTATGTCGGCGATTGGCCAGGGAGGCGGG
TCATCCGTGGACGAGTTCGACTTTGACAACGTCCCTCGCGCCGGGACGGG
GAAGCGGAAGAAGACCACGCCCGGAAAGTCTGCATCCGATCTTGCAGACT
TGGGGGCGGACATCGAGCGGTACCGGAAGCAGGAGAACCGGCAACCAGAG
GGCGTCGGGGAGTCGCTCGTCTCGGGCGCCAAGGGCGTGATATCGAGCAT
AATAGCGCTGGACTTCTTCGTCGTTATCGCCTTCATGCTGTGGTTCATCG
CTGGCGTGGTTTCCTCGTACGGTTTCAGCAACACGTTTTTGTTGGACCAG
TTTAACGAGAAATGGACGTCGGTCGTGCAGCCGGCACTCGGCGTGTTGAT
GGGCGGCACCATTGCCGGCGGCGTTGTGTCTAAGCTCGGAGAATCGGGAG
ACGAGAACGAGGGGACTCGGTAGGTCAGCAATGCAGACGACGAATTGGCC
GAATCACTGGCGAGTGCCGCATCGGTCGCATCGGGGGTTGCTGGTGAAGC
GGCTTCCGTGGTGGGCGACGCCGCTAAGTCCGCGATGGGCGCCGCTATGT
CGGCGATTGGCCAGGGAGGCGGGTCATCCGTGGACGAGTTCGACTTTGAC
AACGTCCCTCGCGCCGGGACGGGGAAGCGGAAGAAGACCACGCCCGGAAA
GTCTGCATCCGATCTTGCAGACTTGGGGGCGGACATCGAGCGGTACCGGA
AGCAGGAGAACCGGCAACCAGAGGGCGTCGGGGAGTCGCTCGTCTCGGGC
GCCAAGGGCGTGATATCGAGCATAATAGCGCTGGACTTCTTCGTCGTTAT
CGCCTTCATGCTGTGGTTCATCGCTGGCGTGGTTTCCTCGTACGGTTTCA
GCAACACGTTTTTGTTGGACCAGTTTAACGAGAAATGGACGTCGGTCGTG
CAGCCGGCACTCGGCGTGTTGATGGGCGGCACCATTGCCGGCGGCGTTGT
GTCTAAGCTCGGAGAATCGGGAGACGAGAACGAGGGGACTCGGTAG
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