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Homology
BLAST of mRNA_S-dermatodea_contig11402.905.1 vs. uniprot
Match: D7FVT8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT8_ECTSI) HSP 1 Score: 292 bits (747), Expect = 4.290e-95 Identity = 163/263 (61.98%), Postives = 189/263 (71.86%), Query Frame = 3
Query: 246 IVHVQGLDGHVRQYVLPEDVLPKDPAYSTDILRLTLPPVA-AEPASAAASLFATSRDASNWVLAFLSPDSWLELEQASPGCRSAVRSSSRWQQTPILDGHSLRCRPDGRKAAYVQHRRAVWRVAKAFQDLRRFARSPGSVFNPGASLADTFRAEERGGVVFPYEARASFVLYDGQARSAWLRSEGVIGGYELLSLEESVELMLEEACFRGVSGPLAEFVPLANKRNSNEWLAASVDNGVVCVIKPLSRPKVVATSWSNYLYVQ 1031
++ VQ DG E LP T L+LTLP +A +E AS AAS +RD +N +L +L+P+SWLE+EQA R AV SS W + DG KA YV+ RRA+ RV+ AFQDLRRFARSP SVFNPGA+LADT AE+R GV+FP EARASF+L+DGQARS WLRSEGVIGG+ELLSL ESV+LMLEEACFRG SGP EFVPLAN+RNSNEWLAA V G VCVIKPLSRPKVVA+SWS+YL VQ
Sbjct: 7 VLEVQARDGRRLNI---ETALPGGECTPTTTLKLTLPALARSEAASPAASFLRLNRDPANLLLGYLAPESWLEVEQACRAGRVAVASSGCWTDKGVGDGQG--------KAVYVRQRRALHRVSGAFQDLRRFARSPSSVFNPGATLADTMNAEQRTGVLFPDEARASFLLFDGQARSGWLRSEGVIGGFELLSLAESVDLMLEEACFRGESGPPPEFVPLANRRNSNEWLAAEVGGGRVCVIKPLSRPKVVASSWSHYLRVQ 258
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_002100.1 |
| Exons | 3 |
| Model size | 1034 |
| Cds size | 801 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924201.6471088-UTR-S-dermatodea_contig11402:3160..3393 | 1622924201.6471088-UTR-S-dermatodea_contig11402:3160..3393 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11402 3161..3393 + |
| 1694079088.682916-UTR-S-dermatodea_contig11402:3160..3393 | 1694079088.682916-UTR-S-dermatodea_contig11402:3160..3393 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11402 3161..3393 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11402.905.1 >prot_S-dermatodea_contig11402.905.1 ID=prot_S-dermatodea_contig11402.905.1|Name=mRNA_S-dermatodea_contig11402.905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=267bp
MLERIVHVQGLDGHVRQYVLPEDVLPKDPAYSTDILRLTLPPVAAEPASA
AASLFATSRDASNWVLAFLSPDSWLELEQASPGCRSAVRSSSRWQQTPIL
DGHSLRCRPDGRKAAYVQHRRAVWRVAKAFQDLRRFARSPGSVFNPGASL
ADTFRAEERGGVVFPYEARASFVLYDGQARSAWLRSEGVIGGYELLSLEE
SVELMLEEACFRGVSGPLAEFVPLANKRNSNEWLAASVDNGVVCVIKPLS
RPKVVATSWSNYLYVQ* back to topmRNA from alignment at S-dermatodea_contig11402:3161..5289+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11402.905.1 ID=mRNA_S-dermatodea_contig11402.905.1|Name=mRNA_S-dermatodea_contig11402.905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2129bp|location=Sequence derived from alignment at S-dermatodea_contig11402:3161..5289+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCTGCTTGTGCTGTTGTCGGGGGGAGGGTGGTGCGTGCCACACGGCAAA
GCGGGGGCTGAAACACCCCGCAAGCGGGTTTTGCTCTCTGCGCCGTTCGT
TCCAGGTTCTACGCAAAGCAGCTTCAAAGCTACGGCCGGTAAATCCAAGA
CAAAACAAGGCCCACAGCTCCATAATATTGGTCATATTCTTTACAACAAT
CAGCGCTCAACTTAAATATACCAACTTGCGACAATGCTCGAGAGGATCGT
CCATGTGCAAGGATTAGACGGCCACGTTCGCCAGTACGTCCTTCCAGAAG
ATGTGCTCCCCAAGGACCCGGCCTACAGCACCGACATCTTGCGGCTCACA
CTGCCACCCGTCGCCGCCGAGCCCGCCTCGGCGGCAGCGTCGCTTTTCGC
CACCAGCCGGGACGCGTCGAACTGGGTCTTGGCATTTCTTTCCCCGGACA
GCTGGTTAGAGCTGGAGCAGGCAAGTCCTGGGTGCCGATCGGCGGTGCGT
TCGTCGAGCCGCTGGCAGCAAACGCCGATCCTTGACGGGCACTCGCTGAG
GTGTCGTCCGGATGGGAGGAAGGCGGCGTACGTGCAGCATCGGCGAGCCG
TGTGGCGGGTTGCCAAGGCGTTTCAGGTGGGTGCATCATGTCAAGGCGGG
CATAGACAATGCTTGTAGCGAGCGTATGCGGTGAAACCATGTTGAACCTC
CGCCGGAAGGTTCTACAGTCTACAGTCTACAGACAGTCTACAGAGTAGTA
CGGGTGTGTGGTATGTCTCCATAATAGTTGATCTCGGCGGTTGGGGGCGG
TTTGTAGGCCATTGGCTGATCAAGTGTGTTCCTTGCGAGGTGGGGAACAT
CAACGTGCGTGCTGAGCGACAACGCAATGATGAGTTCGTGATCCTCCTTG
CGAGAGCACATGCCCCTGTCATGACCCAGACCAGAGAACACCGGGGCGAT
GGTCCCTTGACTCTCCCGACGTCGGTATCCGTAATTGATATTTGTCTTCA
AATTTGCCAACTACCTACTGCTGTACAAATATAAATATAACGACTTTTTA
CAGAGTATACTACAAAGGACTCTCACATTGGTATTGTTGTACAAGTACTT
TTACACAATGGCAGCGGTAGCGGCCTACACAGAACAGTAGAGGCGTGGCG
TGTAGCCCTGCGGTCGCAAGTAAGAAACACCACACCAGTCGTCAACAACG
CTTAAAAAATGACATTATGCATTATGCCACTATTCACAGGATCTTCGGCG
ATTCGCGCGTTCCCCGGGGAGCGTGTTCAACCCCGGAGCAAGCCTGGCCG
ACACGTTTCGCGCCGAAGAGCGGGGGGGTGTGGTGTTTCCGTACGAAGCG
AGGGCCTCCTTCGTCCTGTACGACGGCCAGGCCCGCTCTGCCTGGCTGCG
CTCCGAGGTAGGTTTTGGTCGCGTGTACCTCGGAGGTTGTTGATGGGCAG
AAATGTGCAATACTTGGTCGTTCATTATTTGCGTGGCTCTTTTTGGGATG
GCATGTACTTGTACTTGCCTGCGAAACAACAGAGTGACGTTTTCCTGTTC
GTGGGTTTTAAGAAATGAAACCGCCCAAAGAGAACCCTGTAGCTTTGTGT
CACCTGCCTTCAAGAGTGTACAGTATATCACCTCGATCGCGTCATCAGTC
GTGATCGTTAACGGTGTTCCCAAAGCAAAACCACCGATGTGTTCTACACC
CAACCCAATCCAACCGAACCTAACCCAACTCCACCAGAGGTCTAGAGCTA
GTCTGCTTGCTTTGAAATGTACAGCACCAGCCGTGGAGCACTACACAAAA
GCGGATAAATCTGCTGCTCCAGTACCGTCTCATCAATTTCCGTCAACCTC
GCCCCATTCGCACGTCGCCTATCGCTACAACTTGCCCAGGGCGTGATCGG
CGGCTACGAGCTGCTGTCCCTGGAGGAATCGGTCGAGCTGATGCTAGAAG
AGGCATGCTTTCGCGGGGTTTCCGGCCCTCTGGCGGAGTTTGTCCCGCTC
GCGAACAAGAGGAACAGCAACGAGTGGCTGGCCGCTTCGGTGGACAACGG
CGTGGTGTGCGTCATCAAGCCGCTCAGCAGACCCAAGGTGGTGGCTACCT
CTTGGTCGAACTATCTGTACGTGCAGTAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11402:3161..5289+ >mRNA_S-dermatodea_contig11402.905.1 ID=mRNA_S-dermatodea_contig11402.905.1|Name=mRNA_S-dermatodea_contig11402.905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at S-dermatodea_contig11402:3161..5289+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGAGAGGATCGTCCATGTGCAAGGATTAGACGGCCACGTTCGCCA
GTACGTCCTTCCAGAAGATGTGCTCCCCAAGGACCCGGCCTACAGCACCG
ACATCTTGCGGCTCACACTGCCACCCGTCGCCGCCGAGCCCGCCTCGGCG
GCAGCGTCGCTTTTCGCCACCAGCCGGGACGCGTCGAACTGGGTCTTGGC
ATTTCTTTCCCCGGACAGCTGGTTAGAGCTGGAGCAGGCAAGTCCTGGGT
GCCGATCGGCGGTGCGTTCGTCGAGCCGCTGGCAGCAAACGCCGATCCTT
GACGGGCACTCGCTGAGGTGTCGTCCGGATGGGAGGAAGGCGGCGTACGT
GCAGCATCGGCGAGCCGTGTGGCGGGTTGCCAAGGCGTTTCAGATGCTCG
AGAGGATCGTCCATGTGCAAGGATTAGACGGCCACGTTCGCCAGTACGTC
CTTCCAGAAGATGTGCTCCCCAAGGACCCGGCCTACAGCACCGACATCTT
GCGGCTCACACTGCCACCCGTCGCCGCCGAGCCCGCCTCGGCGGCAGCGT
CGCTTTTCGCCACCAGCCGGGACGCGTCGAACTGGGTCTTGGCATTTCTT
TCCCCGGACAGCTGGTTAGAGCTGGAGCAGGCAAGTCCTGGGTGCCGATC
GGCGGTGCGTTCGTCGAGCCGCTGGCAGCAAACGCCGATCCTTGACGGGC
ACTCGCTGAGGTGTCGTCCGGATGGGAGGAAGGCGGCGTACGTGCAGCAT
CGGCGAGCCGTGTGGCGGGTTGCCAAGGCGTTTCAGGATCTTCGGCGATT
CGCGCGTTCCCCGGGGAGCGTGTTCAACCCCGGAGCAAGCCTGGCCGACA
CGTTTCGCGCCGAAGAGCGGGGGGGTGTGGTGTTTCCGTACGAAGCGAGG
GCCTCCTTCGTCCTGTACGACGGCCAGGCCCGCTCTGCCTGGCTGCGCTC
CGAGGATCTTCGGCGATTCGCGCGTTCCCCGGGGAGCGTGTTCAACCCCG
GAGCAAGCCTGGCCGACACGTTTCGCGCCGAAGAGCGGGGGGGTGTGGTG
TTTCCGTACGAAGCGAGGGCCTCCTTCGTCCTGTACGACGGCCAGGCCCG
CTCTGCCTGGCTGCGCTCCGAGGGCGTGATCGGCGGCTACGAGCTGCTGT
CCCTGGAGGAATCGGTCGAGCTGATGCTAGAAGAGGCATGCTTTCGCGGG
GTTTCCGGCCCTCTGGCGGAGTTTGTCCCGCTCGCGAACAAGAGGAACAG
CAACGAGTGGCTGGCCGCTTCGGTGGACAACGGCGTGGTGTGCGTCATCA
AGCCGCTCAGCAGACCCAAGGTGGTGGCTACCTCTTGGTCGAACTATCTG
TACGTGCAGTAGGGCGTGATCGGCGGCTACGAGCTGCTGTCCCTGGAGGA
ATCGGTCGAGCTGATGCTAGAAGAGGCATGCTTTCGCGGGGTTTCCGGCC
CTCTGGCGGAGTTTGTCCCGCTCGCGAACAAGAGGAACAGCAACGAGTGG
CTGGCCGCTTCGGTGGACAACGGCGTGGTGTGCGTCATCAAGCCGCTCAG
CAGACCCAAGGTGGTGGCTACCTCTTGGTCGAACTATCTGTACGTGCAGT
AG back to top
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