mRNA_S-dermatodea_contig11379.890.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11379.890.1
Unique NamemRNA_S-dermatodea_contig11379.890.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11379.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11379contigS-dermatodea_contig11379:1010..4129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size565
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11379.890.1prot_S-dermatodea_contig11379.890.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11379 1010..1444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.3484173-CDS-S-dermatodea_contig11379:1009..14441622924200.3484173-CDS-S-dermatodea_contig11379:1009..1444Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11379 1010..1444 +
1694079087.712532-CDS-S-dermatodea_contig11379:1009..14441694079087.712532-CDS-S-dermatodea_contig11379:1009..1444Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11379 1010..1444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924200.3593028-UTR-S-dermatodea_contig11379:1444..14701622924200.3593028-UTR-S-dermatodea_contig11379:1444..1470Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11379 1445..1470 +
1694079087.7252154-UTR-S-dermatodea_contig11379:1444..14701694079087.7252154-UTR-S-dermatodea_contig11379:1444..1470Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11379 1445..1470 +
1622924200.369074-UTR-S-dermatodea_contig11379:4026..41291622924200.369074-UTR-S-dermatodea_contig11379:4026..4129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11379 4027..4129 +
1694079087.7356503-UTR-S-dermatodea_contig11379:4026..41291694079087.7356503-UTR-S-dermatodea_contig11379:4026..4129Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11379 4027..4129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11379.890.1

>prot_S-dermatodea_contig11379.890.1 ID=prot_S-dermatodea_contig11379.890.1|Name=mRNA_S-dermatodea_contig11379.890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=145bp
KTRTKLVFPRSSLPLHPHAGCSFFIQKQRKSEKGPLVSVLFFYFDNITRT
TVAKALDTKLSPRASAGTTWTAPTTIPIRPSASTRRGRPPFSLEGVRGGV
SRASAEAGRKKRPRERLIFSTSYLGPGTPSRRGAAGARAWIRGA*
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mRNA from alignment at S-dermatodea_contig11379:1010..4129+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11379.890.1 ID=mRNA_S-dermatodea_contig11379.890.1|Name=mRNA_S-dermatodea_contig11379.890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3120bp|location=Sequence derived from alignment at S-dermatodea_contig11379:1010..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACCCGAACGAAACTAGTTTTTCCTCGCAGCTCTCTTCCCCTCCACCC
CCACGCCGGCTGCTCGTTTTTCATCCAAAAACAAAGAAAATCAGAAAAGG
GACCGCTGGTGTCTGTGCTCTTCTTCTATTTTGACAACATAACCCGAACT
ACAGTAGCGAAAGCCTTGGACACCAAGCTCTCCCCACGCGCAAGCGCCGG
CACCACCTGGACAGCCCCCACCACCATCCCAATCCGCCCCAGCGCATCGA
CGCGGAGGGGACGGCCTCCCTTCTCGCTTGAGGGAGTGCGAGGGGGTGTC
TCGAGGGCATCCGCTGAAGCAGGGAGAAAGAAGCGCCCTCGGGAGCGCCT
CATTTTTTCGACGAGCTACCTAGGCCCAGGGACACCCAGCAGGAGAGGCG
CTGCCGGGGCTCGAGCGTGGATACGAGGCGCGTGACGCATTGAAGCGGGG
GGGGGAAGGAGGTGAGCGAGCGATGGAGCGAGCGAGCTACCGAGGGATCT
ATCGTATCTCTTCTGGATTGGTTCGGGCTGACCTATAATAGTCAGCTTTT
TTGTCGGTCGGATCGGCGAGCGTTTTTTCCCCCCCCTAGTATGTACTAGA
GTTTATATGCTGGTGTTTTCTGTATTGCTCTTTGTATATTATATACCAGT
ATATTTTATAGAGCTAACTCGTCCATGTTCTTGTGTTGTACTGTATATAT
TTTATCTTGTTTTTTGTATACGTAGTTTGTTTTCAGTATATTTGTTTTCG
ATATTTCTCTTGGATTTTGCTCTCTGATATGTTCGGATATGTTCGGAGCT
CAATACTTGAATATTTATCGCCTTTTTTTTTTATAGAGAAACAGAACACT
CTTTATGTACCTATCATACAGAGAGTACTATAAAGAGTAGATCGAATATC
GTCATCTCATCGTTGGTGTGATTTTTTAGATTTTTTAGACCACGCGCTCA
CCTGCAATGATGAGAACATAAAAGAAATGCTATACAGTACACTATGATAT
TATATGGCAGTATTCATTAGCCAACGCAGCTCGGCCCATCACATCCACAC
CAAGCACAAAGCACACACTCCTTCTCTATAGCACTTTAGCTGTCACAGCG
CACATGCTATTCATATTGATGTGTAACACTCTGTGTAGATGAGACAGCAG
CAGTAGTAACAGACCTCGTCATCGTGTTTTTCGGCGCAATAGTGACGTCG
GTACATCTATAGATCGTACATACCAGGTACAGCATAAGACAGGTTTGATA
AGTCAGTTCTATTTACAAGTATTGCTTTACAGTATTTGTATACATAGAGT
AGAAGTGTGCAGAGCCTGCAGAGATGTAGAGCTCTGTCCTCTGTCCTATC
ATATAGATGAGTCGAAAGCTGCTGCTCTCACGCACACAAACGACACGCGG
GGGGATCTCCCAGCTCCATTTTTTTAATGGAACGTTAACGTTGATTTGCT
CTCCCCGCTCGCGCACGGTGACGCTTCGGTTACGCGTGTGCCCTTCCAGC
GGACAGACAGATGTAGCGTGGGGGGCGGGGGGGGGTGGGAGAGGGGTGTC
TCCTTTTTTTTTCGCTTCCGGGAGACAGTTTGTTTTGGTCTGGCGATGCA
ACACATAGACACACACGCACCCGTGCAGACGTGACCATACTGCTGTAGAT
GAACTGCGCAGCAAATGTTGCCATATTCTATGGATTATTAATAATATATA
CTACAGCTAGAGCTGTACCTCTGTCTGTACTATTAATAGTATACTTCGAA
GTATACACGGAGAGTAGAGATGGGCAATGTCATGCGCAGGAGCTAACTCC
AGGTGTCCAACGATTATGATTATACCGGTTCATATTTTATATTTTATGTT
TTACGTGGGAATGGAAATTGTTTCATACCGGTTCATGTTTTATATTTTAT
ATTTTACGTGGGAATGGAAATTGTTTCTGTGCCCTTGTTTCTCCCGCATA
TGGAAGTGTGTACCAGGTACAGAGTACTCACTCGTATGCTCGTATAATAC
TTGTAGTGCACCTGTACTTGAATTATAGCATACTGTACATACCTTATATA
TTTATTTTTTGCACTATAGTAGAAGTAGAATTCTGATTAGTTATTTTCTC
CTTGACTCTTTGCGTGTCTGACCACAAGTCGGGTCGGATTATGCCGATCG
GCTATACGTGTGCAAATCAACCAATCAATCAAATCAATCACTACTGCTGT
AGTATGTTTTATAATGCCAGGTACCAGATACTGTTTTTCTGGGCTATAGC
TGTATGAAGGGTACCACACGCTCTTTGTTTTTTCGTGCTTGCATTTTCAC
CCGCTTGCCCACACAGAAGAACAGTACTACCTCGTACTCAACTGTTTTAT
ACAGCAGTACAGTACAAGTGTGTATAAAACGAACCCCTTGGCGGTTTGCG
GCGGTAAGGGAATCTTGAAAACTACCAGCACACAAGATACAAGTATTAAT
TGCGCATGTGACAGAATACATATCATACAAGTATACAAGTCCAAGAGCTA
AGCTATACTGTACAAGTACCCCCATCCCGTTCAGGGAGGTGCGTGACCAG
ATTCGGGGAGTTGTCATGTCACTCCACGCGTTATTACTGATGACGCAACG
AGGGGATGCGGCACGGGCAGGAGTAAAATCGTATTATATGTGTTTTAGCA
ACGGGGGTACAGTATGACGCTCAGTTCAGGAGGTTTATATATGATCCCAT
ATACTTGGTATTAGACACAAATGATGGCAACGCACACCCTTGAAAAGGAT
GCGACCGGCGGCGCTGCTGCCGTACGATCGAAGATTGTGACGTGATTCGA
TGCTCACTTGTATGACGTACACGTCACTTGGAGGTGGCTGACCCCCAACA
CCCCCGAGGCCGCCTCCCCTCCAACCACAGCCCGGCCTTCCCTCGGCCGT
AGAGAGATGCAATATAATGATATACAACTGTATAGCGACCACTCGAGCCC
TCTACAGGCAGAATCCACAGTAATCGCTTCCCACCGCTCCTCCCTCTCTT
CGGTCCCTCTCCTTCAGGGCTTTCTTCCACTCGGACGCTATATAGCATAC
AGCATTCCCCTACTGCGTCTAATCGTCCAAGGCAACAGCAGCAGCAGCAG
CAGCGGTGGGGAACTTCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11379:1010..4129+

>mRNA_S-dermatodea_contig11379.890.1 ID=mRNA_S-dermatodea_contig11379.890.1|Name=mRNA_S-dermatodea_contig11379.890.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig11379:1010..4129+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACCCGAACGAAACTAGTTTTTCCTCGCAGCTCTCTTCCCCTCCACCC
CCACGCCGGCTGCTCGTTTTTCATCCAAAAACAAAGAAAATCAGAAAAGG
GACCGCTGGTGTCTGTGCTCTTCTTCTATTTTGACAACATAACCCGAACT
ACAGTAGCGAAAGCCTTGGACACCAAGCTCTCCCCACGCGCAAGCGCCGG
CACCACCTGGACAGCCCCCACCACCATCCCAATCCGCCCCAGCGCATCGA
CGCGGAGGGGACGGCCTCCCTTCTCGCTTGAGGGAGTGCGAGGGGGTGTC
TCGAGGGCATCCGCTGAAGCAGGGAGAAAGAAGCGCCCTCGGGAGCGCCT
CATTTTTTCGACGAGCTACCTAGGCCCAGGGACACCCAGCAGGAGAGGCG
CTGCCGGGGCTCGAGCGTGGATACGAGGCGCGTGAAAAACCCGAACGAAA
CTAGTTTTTCCTCGCAGCTCTCTTCCCCTCCACCCCCACGCCGGCTGCTC
GTTTTTCATCCAAAAACAAAGAAAATCAGAAAAGGGACCGCTGGTGTCTG
TGCTCTTCTTCTATTTTGACAACATAACCCGAACTACAGTAGCGAAAGCC
TTGGACACCAAGCTCTCCCCACGCGCAAGCGCCGGCACCACCTGGACAGC
CCCCACCACCATCCCAATCCGCCCCAGCGCATCGACGCGGAGGGGACGGC
CTCCCTTCTCGCTTGAGGGAGTGCGAGGGGGTGTCTCGAGGGCATCCGCT
GAAGCAGGGAGAAAGAAGCGCCCTCGGGAGCGCCTCATTTTTTCGACGAG
CTACCTAGGCCCAGGGACACCCAGCAGGAGAGGCGCTGCCGGGGCTCGAG
CGTGGATACGAGGCGCGTGA
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