mRNA_S-dermatodea_contig11372.885.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11372.885.1
Unique NamemRNA_S-dermatodea_contig11372.885.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11372.885.1 vs. uniprot
Match: A0A6H5K0S5_9PHAE (Codanin-1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.620e-14
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:   81 MDEQELLHQILDQWVPVQEVKDWLDETIEDAPEAQGERPADKISKFKQYDPMSFVVVVLNFLREDTAPLLTPG 299
            M EQ LL  IL++ V VQ+VK WLD+  + A EA  E    K SKFKQYD ++FVV VLNFLRED APLL P 
Sbjct:    1 MGEQYLLLDILEEDVLVQDVKSWLDDAFQGAHEAANEA---KSSKFKQYDALTFVVTVLNFLREDAAPLLAPS 70
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11372.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0S5_9PHAE8.620e-1458.90Codanin-1_C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11372contigS-dermatodea_contig11372:1701..2238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11372.885.1prot_S-dermatodea_contig11372.885.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11372 1701..2158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.966914-CDS-S-dermatodea_contig11372:1700..18321622924199.966914-CDS-S-dermatodea_contig11372:1700..1832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1701..1832 -
1694079087.4339173-CDS-S-dermatodea_contig11372:1700..18321694079087.4339173-CDS-S-dermatodea_contig11372:1700..1832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 1701..1832 -
1622924199.9752245-CDS-S-dermatodea_contig11372:2071..21581622924199.9752245-CDS-S-dermatodea_contig11372:2071..2158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 2072..2158 -
1694079087.4464889-CDS-S-dermatodea_contig11372:2071..21581694079087.4464889-CDS-S-dermatodea_contig11372:2071..2158Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11372 2072..2158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924199.983133-UTR-S-dermatodea_contig11372:2158..22381622924199.983133-UTR-S-dermatodea_contig11372:2158..2238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11372 2159..2238 -
1694079087.4575198-UTR-S-dermatodea_contig11372:2158..22381694079087.4575198-UTR-S-dermatodea_contig11372:2158..2238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11372 2159..2238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11372.885.1

>prot_S-dermatodea_contig11372.885.1 ID=prot_S-dermatodea_contig11372.885.1|Name=mRNA_S-dermatodea_contig11372.885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
MDEQELLHQILDQWVPVQEVKDWLDETIEDAPEAQGERPADKISKFKQYD
PMSFVVVVLNFLREDTAPLLTPG
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mRNA from alignment at S-dermatodea_contig11372:1701..2238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11372.885.1 ID=mRNA_S-dermatodea_contig11372.885.1|Name=mRNA_S-dermatodea_contig11372.885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at S-dermatodea_contig11372:1701..2238- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAATCTCAGGTGTAACCCGAAACCACAGCAGCTCCGCCCTTGCTGCCT
TGCTCCAGTTCACGCGGAACTGCGTGGGCCATGGACGAGCAGGAGCTTCT
GCACCAGATTCTTGACCAATGGGTACCAGTTCAAGAAGTCAAGGATTGGT
TGGACGAAACAATCGAGGTACGGCATGGCTGGTTTCTCCCCACGCCCTTG
ACCCAGGTCAAAAGGAAATTCGCAGAGAGCAGCAGGAGACCCAGGGTCAG
AACATCAGTCAGTCGGCGGTACAGCAGTGCACGTACAGCAAGAACATGCA
CCGATAGCTGGAGGCTTTGAGCTTTCTACCGCCACTACTAGAGTGCCCCG
TATACGTGCGCATGGTGTTTTCATCACTCGTGTCCCATGCCTACTTCTCT
CGACAGGACGCGCCGGAGGCACAAGGCGAACGGCCTGCTGACAAAATTTC
AAAATTCAAACAGTATGACCCGATGAGCTTTGTGGTGGTCGTACTCAACT
TCCTACGGGAGGACACAGCCCCACTTCTCACGCCAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11372:1701..2238-

>mRNA_S-dermatodea_contig11372.885.1 ID=mRNA_S-dermatodea_contig11372.885.1|Name=mRNA_S-dermatodea_contig11372.885.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig11372:1701..2238- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGAGCAGGAGCTTCTGCACCAGATTCTTGACCAATGGGTACCAGT
TCAAGAAGTCAAGGATTGGTTGGACGAAACAATCGAGATGGACGAGCAGG
AGCTTCTGCACCAGATTCTTGACCAATGGGTACCAGTTCAAGAAGTCAAG
GATTGGTTGGACGAAACAATCGAGGACGCGCCGGAGGCACAAGGCGAACG
GCCTGCTGACAAAATTTCAAAATTCAAACAGTATGACCCGATGAGCTTTG
TGGTGGTCGTACTCAACTTCCTACGGGAGGACACAGCCCCACTTCTCACG
CCAGGCGACGCGCCGGAGGCACAAGGCGAACGGCCTGCTGACAAAATTTC
AAAATTCAAACAGTATGACCCGATGAGCTTTGTGGTGGTCGTACTCAACT
TCCTACGGGAGGACACAGCCCCACTTCTCACGCCAGGC
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